BAC Information

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BAC

Clone NameB6Ng01-232K01
Chromosome1 (Build37)
Map Location 52,019,060 - 52,194,157
singlet/doubletdoublet
Overlap geneStat4, LOC100042634, Stat1
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneGls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K01.bB6Ng01-232K01.g
ACCGA044914GA044915
length1,1021,114
definitionB6Ng01-232K01.b B6Ng01-232K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,193,061 - 52,194,157)(52,019,060 - 52,020,142)
sequence
gaattcagcaactctctgattttgtgaattatctcctaaagggagaggaa
gaacaaggtggaataaactcatgtgcaactactgaacttcgagagggttg
tttgtttgtttgtttgtttattttaaacaaagcacgtatctcttcctatt
ttgctggcgttctaagcaaagtttttagagccctaacttttccaagccca
tgagcctggtcgtggtgcttgctgagcccaagctggattcccaggggtca
cacagctgtcctctgctctctgccctcacacacaaagtaaacagtaaatt
aaagtccataatgtatgcctcatgactgggaagcggtcgctacctttctc
ttattgtcaagcattaaaaacatcttgtggagcagcagctgttcctgttt
ttggtcgctcttcgccacaccattggcttcaccttctgtgaatgaaggaa
cagggagtaagtctaaaacgtgcaaagaagataaatccaacgaaaaccaa
ggttcacacaaacttgggtcaaacatgataaaaacgcaaagtctgatgtt
aactataaacttgacagaatctaaaatccctgggtgacaggctcctgccg
tgcctgggcgggattaccttgattacagtgactgatgtgggaaagcccac
ctggctgagggcacgactagtccctggggaaggatccgggactatagaag
ggaaagagggagcctaactaccgtgtgcgcatttgtgtctctctgcttcc
tgtttgtggatgcagtgtgagcagctgtttcaagctgactactccacagg
gatgcactggacctggaactgtagctagagctcccttaagctgcttttgt
ccgagtatcttctcacggcaactagggaaaggaatgaagacaagagtgta
cccatatatatccctaaaacatgttaagtgcatccatgcttaaccaagtg
ccatttctcaccagcacgcataaattgacatagtaccatctactatttta
gtcgctgaccgagtttcgatttaatggacacaaggaaagtggcaaagtgt
cagtggagttatgtatctagcctgtctatggcttgaggggagggagacac
ac
gaattcccatcttcaagtggccaaggagtagttatgaagggagtaatacc
cagctgctctcaatcccaaacccagtcgaggagacaggttcgtcctgtga
caggaagaacgcagcttggtgggagagctctcgaaggacagaggctgagg
gcaaccttcatcacccccagtcaccccgagcaccgaacacgcttgtcttt
atgaagcttaagacactctatcagagtcgggtggtggtggtgcacgcgtt
taatcccagcacttgggaggcagagcaggcggatttctgagttcgaggcc
agcctggtctacagagtgagttccaggacagccagggctacacagagaaa
ccctgtcttgagaaaccaaaaaaaaaaaaaaaaaacaaacaaaaaaaaaa
aaacaacaacaaaaaacgtctatcaggtgagcccttcaattcctcccaag
ttttaattcaaaatatcttctttggctatattctcctttctttctccagg
cttgtcagaaataattcttcctgaataagaaaacatggcgtgacacactt
gaaattctctttaactctgcctttccttgatgaaatccagtaaacaaaag
tgtgtgccttctccctaagcacaaatccaaacatcattagggaagtatgg
aggactgctttcccaagataactctcacgagccgataatgctgggtacag
tttgttcaaaagctttatcaaaatactttaaaatacttaagttctacatt
ttatttttgatttaaaaaatacatcctctagaaatttagagtctagatta
tgcattctttcatgtttttactcagtgattttttttttttaaatgtcccc
tcctacagtggactcttggaaatcaatggattgaagagatagggaaacgt
tttctcaggatggtcttcaacccctgggagccacatttgggctccactat
aagactcctgggttgaataaggtaggttatggaggcatttaatacttcgg
aaataccataggcacttctcttgtttttgagccataggtatgccaagtac
tactcatcgtatcttcataatgaacctggtggagtaggtatcgatgttcc
tcatctggcaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52193061_52194157
seq2: B6Ng01-232K01.b_45_1146 (reverse)

seq1  GTGTGTCT-CCTCCCTCAAAGCCATAGACAGGCTTTATACAT-ACTCACG  48
      |||||||| ||||||   ||||||||||||||||  |||||| ||||   
seq2  GTGTGTCTCCCTCCCCTCAAGCCATAGACAGGCTAGATACATAACTCCAC  50

seq1  TGACACTTTG-CACTTT-CTTGTGTTCATTTAATCGAAACTCGGTCAGCG  96
      |||||||||| |||||| ||||||| |||| |||||||||||||||||||
seq2  TGACACTTTGCCACTTTCCTTGTGTCCATTAAATCGAAACTCGGTCAGCG  100

seq1  ACTTAAATAGTAGATGGTACTATGTCAATTTATGCGTGCTGGTGAGAAAT  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATAGTAGATGGTACTATGTCAATTTATGCGTGCTGGTGAGAAAT  150

seq1  GGCACTTGGTTTAAGCATGGATGCACTTAAC-TGTTTTTAGGATATATAT  195
      ||||||||| ||||||||||||||||||||| ||||||  ||||||||||
seq2  GGCACTTGG-TTAAGCATGGATGCACTTAACATGTTTTAGGGATATATAT  199

seq1  TGGTACACTCTTGTCTTCATTCCTTTCCCT-GTTGCCGTGAGAAGATACT  244
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGTACACTCTTGTCTTCATTCCTTTCCCTAGTTGCCGTGAGAAGATACT  249

seq1  CGGACAAAAGCAGCTTAAGGGAGCTCTAGCTACAGTTCCAGGTCCAGTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAAAAGCAGCTTAAGGGAGCTCTAGCTACAGTTCCAGGTCCAGTGC  299

seq1  ATCCCTGTGGAGTAGTCAGCTTGAAACAGCTGCTCACACTGCATCCACAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTGGAGTAGTCAGCTTGAAACAGCTGCTCACACTGCATCCACAA  349

seq1  ACAGGAAGCAGAGAGACACAAATGCGCACACGGTAGTTAGGCTCCCTCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCAGAGAGACACAAATGCGCACACGGTAGTTAGGCTCCCTCTT  399

seq1  TCCCTTCTATAGTCCCGGATCCTTCCCCAGGGACTAGTCGTGCCCTCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTATAGTCCCGGATCCTTCCCCAGGGACTAGTCGTGCCCTCAGC  449

seq1  CAGGTGGGCTTTCCCACATCAGTCACTGTAATCAAGGTAATCCCGCCCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGCTTTCCCACATCAGTCACTGTAATCAAGGTAATCCCGCCCAG  499

seq1  GCACGGCAGGAGCCTGTCACCCAGGGATTTTAGATTCTGTCAAGTTTATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCAGGAGCCTGTCACCCAGGGATTTTAGATTCTGTCAAGTTTATA  549

seq1  GTTAACATCAGACTTTGCGTTTTTATCATGTTTGACCCAAGTTTGTGTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCAGACTTTGCGTTTTTATCATGTTTGACCCAAGTTTGTGTGA  599

seq1  ACCTTGGTTTTCGTTGGATTTATCTTCTTTGCACGTTTTAGACTTACTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTTTTCGTTGGATTTATCTTCTTTGCACGTTTTAGACTTACTCC  649

seq1  CTGTTCCTTCATTCACAGAAGGTGAAGCCAATGGTGTGGCGAAGAGCGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTTCATTCACAGAAGGTGAAGCCAATGGTGTGGCGAAGAGCGAC  699

seq1  CAAAAACAGGAACAGCTGCTGCTCCACAAGATGTTTTTAATGCTTGACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGGAACAGCTGCTGCTCCACAAGATGTTTTTAATGCTTGACAA  749

seq1  TAAGAGAAAGGTAGCGACCGCTTCCCAGTCATGAGGCATACATTATGGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGGTAGCGACCGCTTCCCAGTCATGAGGCATACATTATGGAC  799

seq1  TTTAATTTACTGTTTACTTTGTGTGTGAGGGCAGAGAGCAGAGGACAGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTACTGTTTACTTTGTGTGTGAGGGCAGAGAGCAGAGGACAGCT  849

seq1  GTGTGACCCCTGGGAATCCAGCTTGGGCTCAGCAAGCACCACGACCAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCCCTGGGAATCCAGCTTGGGCTCAGCAAGCACCACGACCAGGC  899

seq1  TCATGGGCTTGGAAAAGTTAGGGCTCTAAAAACTTTGCTTAGAACGCCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTTGGAAAAGTTAGGGCTCTAAAAACTTTGCTTAGAACGCCAG  949

seq1  CAAAATAGGAAGAGATACGTGCTTTGTTTAAAATAAACAAACAAACAAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGAAGAGATACGTGCTTTGTTTAAAATAAACAAACAAACAAAC  999

seq1  AAACAACCCTCTCGAAGTTCAGTAGTTGCACATGAGTTTATTCCACCTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCTCTCGAAGTTCAGTAGTTGCACATGAGTTTATTCCACCTTG  1049

seq1  TTCTTCCTCTCCCTTTAGGAGATAATTCACAAAATCAGAGAGTTGCTGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCTCCCTTTAGGAGATAATTCACAAAATCAGAGAGTTGCTGAA  1099

seq1  TTC  1097
      |||
seq2  TTC  1102

seq1: chr1_52019060_52020142
seq2: B6Ng01-232K01.g_69_1182

seq1  GAATTCCCATCTTCAAGTGGCCAAGGAGTAGTTATGAAGGGAGTAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCTTCAAGTGGCCAAGGAGTAGTTATGAAGGGAGTAATACC  50

seq1  CAGCTGCTCTCAATCCCAAACCCAGTCGAGGAGACAGGTTCGTCCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCTCAATCCCAAACCCAGTCGAGGAGACAGGTTCGTCCTGTGA  100

seq1  CAGGAAGAACGCAGCTTGGTGGGAGAGCTCTCGAAGGACAGAGGCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAACGCAGCTTGGTGGGAGAGCTCTCGAAGGACAGAGGCTGAGG  150

seq1  GCAACCTTCATCACCCCCAGTCACCCCGAGCACCGAACACGCTTGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTTCATCACCCCCAGTCACCCCGAGCACCGAACACGCTTGTCTTT  200

seq1  ATGAAGCTTAAGACACTCTATCAGAGTCGGGTGGTGGTGGTGCACGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTTAAGACACTCTATCAGAGTCGGGTGGTGGTGGTGCACGCGTT  250

seq1  TAATCCCAGCACTTGGGAGGCAGAGCAGGCGGATTTCTGAGTTCGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGCAGGCGGATTTCTGAGTTCGAGGCC  300

seq1  AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA  350

seq1  CCCTGTCTTGAGAAACCAAAAAAAAAAAAAAAAAACAAACAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTGAGAAACCAAAAAAAAAAAAAAAAAACAAACAAAAAAAAAA  400

seq1  AAACAACAACAAAAAACGTCTATCAGGTGAGCCCTTCAATTCCTCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACAAAAAACGTCTATCAGGTGAGCCCTTCAATTCCTCCCAAG  450

seq1  TTTTAATTCAGAATATCTTCTTTGGCTATATTCTCCTTTCTTTCTCCAGG  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCAAAATATCTTCTTTGGCTATATTCTCCTTTCTTTCTCCAGG  500

seq1  CTTGTCAGAAATAATTCTTCCTGAATAAGAAAACATGGCGTGACACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGAAATAATTCTTCCTGAATAAGAAAACATGGCGTGACACACTT  550

seq1  GAAATTCTCTTTAACTCTGCCTTTCCTTGATGAAATCCAGTAAACAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCTTTAACTCTGCCTTTCCTTGATGAAATCCAGTAAACAAAAG  600

seq1  TGTGTGCCTTCTCCCTAAGCACAAATCCAAACATCATTAGGGAAGTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTTCTCCCTAAGCACAAATCCAAACATCATTAGGGAAGTATGG  650

seq1  AGGACTGCTTTCCCAAGATAACTCTCACGAGCCGATAATGCTGGGTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTTTCCCAAGATAACTCTCACGAGCCGATAATGCTGGGTACAG  700

seq1  TTTGTTCAAAAGCTTTATCAAAATACTTTAAAATACTTAAGTTCTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAAAAGCTTTATCAAAATACTTTAAAATACTTAAGTTCTACATT  750

seq1  T--ATTTTGATTTAAAAAATACAT-CTCTAG-AATTTAGAGTCTAGATTA  796
      |   |||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TTATTTTTGATTTAAAAAATACATCCTCTAGAAATTTAGAGTCTAGATTA  800

seq1  TGCATTCTTTCATGTTTTTACTCAGTGA--TTTTTTTTTTAAATGT-CCC  843
      ||||||||||||||||||||||||||||  |||||||||||||||| |||
seq2  TGCATTCTTTCATGTTTTTACTCAGTGATTTTTTTTTTTTAAATGTCCCC  850

seq1  TCCTACAGTGGACTC-TGGAAATCAATGAAT--GAGAGATAGG--AACG-  887
      ||||||||||||||| |||||||||||| ||   |||||||||  |||| 
seq2  TCCTACAGTGGACTCTTGGAAATCAATGGATTGAAGAGATAGGGAAACGT  900

seq1  TTTCTCAGGAT-GTC-TCAACCC--TGGAG-CACATTT-GGCT-CACTAT  930
      ||||||||||| ||| |||||||   |||| ||||||| |||| ||||||
seq2  TTTCTCAGGATGGTCTTCAACCCCTGGGAGCCACATTTGGGCTCCACTAT  950

seq1  -AGACTC--TGGTTG-ATAA-GTA-GTTAT-GAGGCATTTAATACTTCGA  973
       ||||||   ||||| |||| ||| ||||| |||||||||||||||||| 
seq2  AAGACTCCTGGGTTGAATAAGGTAGGTTATGGAGGCATTTAATACTTCGG  1000

seq1  AATAACAATAGCCAC-TCTCT--GTTATGAGCCATAGGTATGCCAAGTAC  1020
      ||  || |||| ||| |||||   || |||||||||||||||||||||||
seq2  AAATACCATAGGCACTTCTCTTGTTTTTGAGCCATAGGTATGCCAAGTAC  1050

seq1  TACTCATCGTAATCTTCATAATGACCCT-GTGAGGTAGGTATCGATG-TC  1068
      |||||||||| ||||||||||||| ||| |||  ||||||||||||| ||
seq2  TACTCATCGT-ATCTTCATAATGAACCTGGTGGAGTAGGTATCGATGTTC  1099

seq1  CTCATCTGGCAGGCC  1083
      ||||||||||| |||
seq2  CTCATCTGGCAAGCC  1114