BAC Information

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BAC

Clone NameB6Ng01-232L03
Chromosome1 (Build37)9 (Build37)
Map Location 41,263,320 - 41,264,44816,012,010 - 16,012,073
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232L03.bB6Ng01-232L03.g
ACCGA044965GA044966
length1,130987
definitionB6Ng01-232L03.b B6Ng01-232L03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,263,320 - 41,264,448)(16,012,010 - 16,012,073)
sequence
gaattcaaaaccaagttgggaaaaatacattgcgctagtttgaagggcaa
atctttagagactctgtcccaatttgccttctgtagctgtaacaaactcc
atgaccaaacgcaacctaagaaggaaagggtttatttggcttacacatcc
tgaccacagtggatcactgagggaagtcaaggcaggaactcaaataaggc
aggaacctggaggctggtgctgaaacagaggccatgaggggtgatcctta
ctgactcgttccccattgctttctctgcttgcgtttttatacaactcaga
atcacctacccagagatggcaccaccctaagtgggatggccttggcacat
gcatcatcagttaagaaaacggcccacaggcttgggccaatcttatggag
tcattgtctgaattgagactcacccttagcttgaatcaagttggcagaag
tctatctagcacagagtctactatgtttcaccatgtgaatatttgacata
tttaaggatgtgttgaatggacacgttcacatttctctgatttctgaagt
cagcatacactgactttagcaagcgttgaacgtgaaatttgtcaggtcca
aaataaaaaccaatgtgcctagtcactagctacctagtcagaacatcttg
acattgtctatagaagaggttctcaacctgtgggttatgacacctttgat
caaatgacccttttgcagaagtcacctaagatcatcggaaaacagaaatt
tacatcatgattcatatcagtagcaaaactacagttatgaggtagcaatg
aaaataattttatggttggggatcacaacaacatggagaactatatttca
gggttgtagcattaggaaggttaagaaccacatatagcattaagaatatt
gtcttcctctgtcctggataacatcactctgtaactgtatcttatacact
gaagtgaacaatgcccagcactacttttcctcactatttgtcctgcccac
accttctctacttgacctgctctcacccaaatctgcatgtgaagaatttg
taagatacaatgacttgccaactgacaaagagctcccatcctctggctga
ttccatgtctttgtgaagaaaagaaacaaa

gaattcctttctctctctaccagatatcctgccttctattcctgtctcaa
ctcataggcccacagctcttttattgacagctgatgtttctacacagtac
ataaaagtttctctctatgggttattattgtgtttcatagactttacagc
tggatatggctactgattgcttttctcccttggcagcttgcataagacat
tcagatgctttgatgactagtcttcagacagaggcatcaaggttagttct
agattgattccttaaagccctttgtgtgaagtgggaggtagagtgttctg
caatatggtcttaccttcaagttccaggaggtgacaaaggacagtggcaa
gagcttatattgttttagagagtctcttggacttccctgaccaaaacatc
aaaaggaggtttcctgtgcctagcactggaatttttgctagatagtcaag
ggctctgggagggagcattatctgggttgtcaacttgaatatatctgcaa
tcaactgaaacccaaccagcttatggtttttcttgattggattatttgaa
gtgggaaggactaccctaaatgtgagccttatctttcggcggcaggttac
atacaggggcatggaagaaggaagctttggctttttgccagcttgccctc
actcttgctggcaaactcatcccttctattgctgaggtccttcttcacta
gtgttagaacctacttcttttagatccagtgtagactggataagaccaag
cagctctttaggaatcctctgcaacttagactcagattgagactgtagag
acagctagtctcctagactaaacaactggattcttggcctctccactggg
agacagccagtatggggccatagcctgtaaagtcattctaatatcacaca
cacacacacatacacacacacacacacacactcatacagcacaggacagg
acagagagagagagttagggtttctattgctgtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41263320_41264448
seq2: B6Ng01-232L03.b_47_1176 (reverse)

seq1  TTTG-TTCTTT--CTCACAAAGACATGGGAATCAG-CAGAGGGATGGGAG  46
      |||| ||||||   |||||||||||| |||||||| |||| |||||||||
seq2  TTTGTTTCTTTTCTTCACAAAGACAT-GGAATCAGCCAGA-GGATGGGAG  48

seq1  CTCTTTGTTCAGTTTGGCAGTTCA-TGTATC-TACAAATCTATCACATGC  94
      ||||||| |||| ||||||  ||| |||||| |||||||   ||||||||
seq2  CTCTTTG-TCAG-TTGGCAAGTCATTGTATCTTACAAATTCTTCACATGC  96

seq1  AGATTTGGGTGGAGAGCAGGTCAAGTAGAGGAGGTGTGGGCAGGAC-AAT  143
      |||||||||| ||||||||||||||||||| ||||||||||||||| |||
seq2  AGATTTGGGT-GAGAGCAGGTCAAGTAGAGAAGGTGTGGGCAGGACAAAT  145

seq1  AGTGAGGAAAAGTAGTGCTGGGCATTGTTCACTTCAGTGTATAAGATACA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAAAAGTAGTGCTGGGCATTGTTCACTTCAGTGTATAAGATACA  195

seq1  GTTACAGAGTGATGTTTATCCAGGACAGAGGAAGACAATATTCTTAATGC  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTACAGAGTGATG-TTATCCAGGACAGAGGAAGACAATATTCTTAATGC  244

seq1  TATATGTGGTTCTTAACCTTCCTAATGCTACAACCCTGAAATATAGTTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGGTTCTTAACCTTCCTAATGCTACAACCCTGAAATATAGTTCT  294

seq1  CCATGTTGTTGTGATCCCCAACCATAAAATTATTTTCATTGCTACCTCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGTTGTGATCCCCAACCATAAAATTATTTTCATTGCTACCTCAT  344

seq1  AACTGTAGTTTTGCTACTGATATGAATCATGATGTAAATTTCTGTTTTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTTTTGCTACTGATATGAATCATGATGTAAATTTCTGTTTTCC  394

seq1  GATGATCTTAGGTGACTTCTGCAAAAGGGTCATTTGATCAAAGGTGTCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTAGGTGACTTCTGCAAAAGGGTCATTTGATCAAAGGTGTCAT  444

seq1  AACCCACAGGTTGAGAACCTCTTCTATAGACAATGTCAAGATGTTCTGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGGTTGAGAACCTCTTCTATAGACAATGTCAAGATGTTCTGAC  494

seq1  TAGGTAGCTAGTGACTAGGCACATTGGTTTTTATTTTGGACCTGACAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGCTAGTGACTAGGCACATTGGTTTTTATTTTGGACCTGACAAAT  544

seq1  TTCACGTTCAACGCTTGCTAAAGTCAGTGTATGCTGACTTCAGAAATCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTCAACGCTTGCTAAAGTCAGTGTATGCTGACTTCAGAAATCAG  594

seq1  AGAAATGTGAACGTGTCCATTCAACACATCCTTAAATATGTCAAATATTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGAACGTGTCCATTCAACACATCCTTAAATATGTCAAATATTC  644

seq1  ACATGGTGAAACATAGTAGACTCTGTGCTAGATAGACTTCTGCCAACTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGAAACATAGTAGACTCTGTGCTAGATAGACTTCTGCCAACTTG  694

seq1  ATTCAAGCTAAGGGTGAGTCTCAATTCAGACAATGACTCCATAAGATTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCTAAGGGTGAGTCTCAATTCAGACAATGACTCCATAAGATTGG  744

seq1  CCCAAGCCTGTGGGCCGTTTTCTTAACTGATGATGCATGTGCCAAGGCCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCTGTGGGCCGTTTTCTTAACTGATGATGCATGTGCCAAGGCCA  794

seq1  TCCCACTTAGGGTGGTGCCATCTCTGGGTAGGTGATTCTGAGTTGTATAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTAGGGTGGTGCCATCTCTGGGTAGGTGATTCTGAGTTGTATAA  844

seq1  AAACGCAAGCAGAGAAAGCAATGGGGAACGAGTCAGTAAGGATCACCCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAAGCAGAGAAAGCAATGGGGAACGAGTCAGTAAGGATCACCCCT  894

seq1  CATGGCCTCTGTTTCAGCACCAGCCTCCAGGTTCCTGCCTTATTTGAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTCTGTTTCAGCACCAGCCTCCAGGTTCCTGCCTTATTTGAGTT  944

seq1  CCTGCCTTGACTTCCCTCAGTGATCCACTGTGGTCAGGATGTGTAAGCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTGACTTCCCTCAGTGATCCACTGTGGTCAGGATGTGTAAGCCA  994

seq1  AATAAACCCTTTCCTTCTTAGGTTGCGTTTGGTCATGGAGTTTGTTACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTCCTTCTTAGGTTGCGTTTGGTCATGGAGTTTGTTACAG  1044

seq1  CTACAGAAGGCAAATTGGGACAGAGTCTCTAAAGATTTGCCCTTCAAACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGGCAAATTGGGACAGAGTCTCTAAAGATTTGCCCTTCAAACT  1094

seq1  AGCGCAATGTATTTTTCCCAACTTGGTTTTGAATTC  1129
      ||||||||||||||||||||||||||||||||||||
seq2  AGCGCAATGTATTTTTCCCAACTTGGTTTTGAATTC  1130


seq1: chr9_16012010_16012073
seq2: B6Ng01-232L03.g_935_997

seq1  CATAGCCTGT-AAGTCATTTTAATATCACACACACACACACACATACACA  49
      |||||||||| |||||||| ||||||  ||||||||||||||||||||||
seq2  CATAGCCTGTAAAGTCATTCTAATAT--CACACACACACACACATACACA  48

seq1  CACACACACACACAC  64
      |||||||||||||||
seq2  CACACACACACACAC  63


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