BAC Information

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BAC

Clone NameB6Ng01-232M15
Chromosome1 (Build37)
Map Location 156,607,833 - 156,774,662
singlet/doubletdoublet
Overlap genenone
Upstream geneRnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232M15.bB6Ng01-232M15.g
ACCGA045034GA045035
length7221,089
definitionB6Ng01-232M15.b B6Ng01-232M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,607,833 - 156,608,552)(156,773,585 - 156,774,662)
sequence
gaattccttgcactaaggtgggtacagaattacaccttattacatcaaaa
ttaaatacagaaccccattaaaaattgatgagaataaaatgggttctgga
gtttagagggtctgcaatcaaggcttgcttcagcacttacgctggaggga
ctccaagaacaagttgtctgggagcagggagcagaacccagtcctactgc
agcagtgcatcccattctcagaactgtatgtcttcctcagtctgatatgg
gacattgagataatggtcctgccctccacagactgctcatctcctctatc
tgtaaaacctctgtacttgttttctttagcatctcactctgcttaaaaat
atatatcaacactcaaaacatgtttaaggggctggggagatggctcagtg
attaaaagcactggctgttctttcagaggacccaggttctactcccagca
cccatgtagtgactaacaaccatctgtaacaccagtgccatggggcctaa
tgctctcttctggccttcactgacattgtacatacctatatgcaggtaaa
acacatacaaataaaaataaatatgtctctaaaatcgtcatgcttaatac
atcttcccagtcacttccaatatttagagaacaactgaacccattttctg
atttccctcacatctctagagggaatctagggaagagacaaataaacaag
atatgtgatcaagatgaggaca
gaattctagtcaacaactcgaacagaagctttcaaaatcaagctctttac
tagcaacggtccagttcaaagatatttataaggtgagtgatggtaggaaa
atattgaaggtctctttttcgtgtaattagacaattatgtccctataaga
acaaaaaaatatgtgtgtataatgaaaacactgcggttaataacagaatc
atctcaccaggcagcgcctggcattgcaagtctgctccctgtgtttagaa
cccaggctgcagggaagcggcatgaagtgacacaggcgactgctgccaga
aactctttgccttcaccatgtccttggttttgaatttgggtttgattatc
atgtatttagaaaccctttaccgctgacaagtttcttttgacacccccgt
ttagttatgtgagcccatacggggtcatgggccatagtttctgaagctac
gattttggtgcgtgagctagggaaggctaagtacgggtgtgggtgttact
tagtgatcatcatggcagccagtgagtgagctctctcagggttggggggc
tgcaggctttaggttatttgcctagttggttgtgcccgattttatgattc
ttctcagcacccgaaccctggacagcttcgccggcgaagagcgctgttct
gaaatcctttattcacgcatttattcattcaccacctattttattccact
gtcacatttggcatttttaaagaaacaccaaggaagcagagactacctac
cgatcttgttctcatgggagtttatgacgtctttggaaaaacaagacaaa
ggcaagtttaaaaataagcataacaatttgttattttggtaataacttac
agtgtgaaagtcagttttcataacttttttttttttggtagaaaaataaa
gacgaccaatatactctttttaagattgtccatcgtgggtttagggaaag
aaaaacgatgcgtatgtattgttgttaatgaaaagaagtttttttttttc
agtgagcactggatgagaatttttccgaagaatactcagaagaaggcttg
agctgaagaagagggtgaagatcttaatgggctaatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156607833_156608552
seq2: B6Ng01-232M15.b_43_764

seq1  GAATTCC-TGCACTAAGGTGGGTACAGAATTACA-CATATTACATCAAAA  48
      ||||||| |||||||||||||||||||||||||| | |||||||||||||
seq2  GAATTCCTTGCACTAAGGTGGGTACAGAATTACACCTTATTACATCAAAA  50

seq1  TTAAATACAGAACCCCATTAAAAATTGATGAGAATAAAATGGGTTCTGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACAGAACCCCATTAAAAATTGATGAGAATAAAATGGGTTCTGGA  100

seq1  GTTTAGAGGGTCTGCAATCAAGGCTTGCTTCAGCACTTACGCTGGAGGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGGGTCTGCAATCAAGGCTTGCTTCAGCACTTACGCTGGAGGGA  150

seq1  CTCCAAGAACAAGTTGTCTGGGAGCAGGGAGCAGAACCCAGTCCTACTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAACAAGTTGTCTGGGAGCAGGGAGCAGAACCCAGTCCTACTGC  200

seq1  AGCAGTGCATCCCATTCTCAGAACTGTATGTCTTCCTCAGTCTGATATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCATCCCATTCTCAGAACTGTATGTCTTCCTCAGTCTGATATGG  250

seq1  GACATTGAGATAATGGTCCTGCCCTCCACAGACTGCTCATCTCCTCTATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGATAATGGTCCTGCCCTCCACAGACTGCTCATCTCCTCTATC  300

seq1  TGTAAAACCTCTGTACTTGTTTTCTTTAGCATCTCACTCTGCTTAAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCTCTGTACTTGTTTTCTTTAGCATCTCACTCTGCTTAAAAAT  350

seq1  ATATATCAACACTCAAAACATGTTTAAGGGGCTGGGGAGATGGCTCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAACACTCAAAACATGTTTAAGGGGCTGGGGAGATGGCTCAGTG  400

seq1  ATTAAAAGCACTGGCTGTTCTTTCAGAGGACCCAGGTTCTACTCCCAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCACTGGCTGTTCTTTCAGAGGACCCAGGTTCTACTCCCAGCA  450

seq1  CCCATGTAGTGACTAACAACCATCTGTAACACCAGTGCCATGGGGCCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGTGACTAACAACCATCTGTAACACCAGTGCCATGGGGCCTAA  500

seq1  TGCTCTCTTCTGGCCTTCACTGACATTGTACATACCTATATGCAGGTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTCTGGCCTTCACTGACATTGTACATACCTATATGCAGGTAAA  550

seq1  ACACATACAAATAAAAATAAATATGTCTCTAAAATCGTCATGCTTAATAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAAATAAAAATAAATATGTCTCTAAAATCGTCATGCTTAATAC  600

seq1  ATCTTCCCAGTCACCTCCAATAGTTAGAGAACAACTGAACCCATTTTCTG  648
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ATCTTCCCAGTCACTTCCAATATTTAGAGAACAACTGAACCCATTTTCTG  650

seq1  ATTTCCCTCACATCTCTAGAGGGAATCTAGGGAAGAGACAAAGAAACAAG  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTCCCTCACATCTCTAGAGGGAATCTAGGGAAGAGACAAATAAACAAG  700

seq1  ATATGTGATCAAGATGAGGACA  720
      ||||||||||||||||||||||
seq2  ATATGTGATCAAGATGAGGACA  722

seq1: chr1_156773585_156774662
seq2: B6Ng01-232M15.g_69_1157 (reverse)

seq1  CCTA-TAGCCCA-TAAGATCTTCA-CCTCTTCTTCAGCTC-AGCCTTC-T  45
      |||| ||||||| ||||||||||| ||||||||||||||| ||||||| |
seq2  CCTATTAGCCCATTAAGATCTTCACCCTCTTCTTCAGCTCAAGCCTTCTT  50

seq1  CTGTGTA-TCTTCTGGAAAATTCTCCATCAGTGCTCACTGAAAAAAAAAA  94
      ||| ||| ||||| | |||||||||   ||||||||||||||||||||||
seq2  CTGAGTATTCTTCGGAAAAATTCTCATCCAGTGCTCACTGAAAAAAAAAA  100

seq1  ACTTC-TCTCATTAACACCAATACATACGCATCGTTTTTCTTTCCCTAAA  143
      ||||| | ||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTCATTAACAACAATACATACGCATCGTTTTTCTTTCCCTAAA  150

seq1  -CCACG-TGGACAATCTTTAAAAAGAGTATGTTGGTCGTCTTTTATTTTT  191
       ||||| ||||||||| ||||||||||||| ||||||||| |||||||||
seq2  CCCACGATGGACAATC-TTAAAAAGAGTATATTGGTCGTC-TTTATTTTT  198

seq1  CTACC-AAAAAAAAAAAGTTATGAAAACTGACTTTCACACTGTAAGTTAT  240
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAAAAAAAAAAGTTATGAAAACTGACTTTCACACTGTAAGTTAT  248

seq1  TACCAAAATAACAAATTGTTATGCTTATTTTTAAACTTGCCTTTGTCTTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAATAACAAATTGTTATGCTTATTTTTAAACTTGCCTTTGTCTTG  298

seq1  TTTTTCCAAAGACGTCATAAACT-CCATGAGAACAAGATCGGTAGGTAGT  339
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTCCAAAGACGTCATAAACTCCCATGAGAACAAGATCGGTAGGTAGT  348

seq1  CTCTGCTTCCTTGGTGTTTCTTT-AAAATGCCAAATGTGACAGTGGAAT-  387
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CTCTGCTTCCTTGGTGTTTCTTTAAAAATGCCAAATGTGACAGTGGAATA  398

seq1  AAATAGGTGGTGAATGAATAAATGCGTGAATAAAGGATTTCAGAACAGCG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTGGTGAATGAATAAATGCGTGAATAAAGGATTTCAGAACAGCG  448

seq1  CTCTTCGCCGGCGAAGCTGTCCAGGGTTCGGGTGCTGAGAAGAATCATAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGCCGGCGAAGCTGTCCAGGGTTCGGGTGCTGAGAAGAATCATAA  498

seq1  AATCGGGCACAACCAACTAGGCAAATAACCTAAAGCCTGCAGCCCCCCAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGGCACAACCAACTAGGCAAATAACCTAAAGCCTGCAGCCCCCCAA  548

seq1  CCCTGAGAGAGCTCACTCACTGGCTGCCATGATGATCACTAAGTAACACC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGAGAGCTCACTCACTGGCTGCCATGATGATCACTAAGTAACACC  598

seq1  CACACCCGTACTTAGCCTTCCCTAGCTCACGCACCAAAATCGTAGCTTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCGTACTTAGCCTTCCCTAGCTCACGCACCAAAATCGTAGCTTCA  648

seq1  GAAACTATGGCCCATGACCCCGTATGGGCTCACATAACTAAACGGGGGTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATGGCCCATGACCCCGTATGGGCTCACATAACTAAACGGGGGTG  698

seq1  TCAAAAGAAACTTGTCAGCGGTAAAGGGTTTCTAAATACATGATAATCAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAACTTGTCAGCGGTAAAGGGTTTCTAAATACATGATAATCAA  748

seq1  ACCCAAATTCAAAACCAAGGACATGGTGAAGGCAAAGAGTTTCTGGCAGC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATTCAAAACCAAGGACATGGTGAAGGCAAAGAGTTTCTGGCAGC  798

seq1  AGTCGCCTGTGTCACTTCATGCCGCTTCCCTGCAGCCTGGGTTCTAAACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCCTGTGTCACTTCATGCCGCTTCCCTGCAGCCTGGGTTCTAAACA  848

seq1  CAGGGAGCAGACTTGCAATGCCAGGCGCTGCCTGGTGAGATGATTCTGTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAGACTTGCAATGCCAGGCGCTGCCTGGTGAGATGATTCTGTT  898

seq1  ATTAACCGCAGTGTTTTCATTATACACACATATTTTTTTGTTCTTATAGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCGCAGTGTTTTCATTATACACACATATTTTTTTGTTCTTATAGG  948

seq1  GACATAATTGTCTAATTACACGAAAAAGAGACCTTCAATATTTTCCTACC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATTGTCTAATTACACGAAAAAGAGACCTTCAATATTTTCCTACC  998

seq1  ATCACTCACCTTATAAATATCTTTGAACTGGACCGTTGCTAGTAAAGAGC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCACCTTATAAATATCTTTGAACTGGACCGTTGCTAGTAAAGAGC  1048

seq1  TTGATTTTGAAAGCTTCTGTTCGAGTTGTTGACTAGAATTC  1078
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGAAAGCTTCTGTTCGAGTTGTTGACTAGAATTC  1089