BAC Information

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BAC

Clone NameB6Ng01-233A15
Chromosome1 (Build37)
Map Location 195,416,815 - 195,555,981
singlet/doubletdoublet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233A15.bB6Ng01-233A15.g
ACCGA045209GA045210
length138621
definitionB6Ng01-233A15.b B6Ng01-233A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,416,815 - 195,416,952)(195,555,362 - 195,555,981)
sequence
tttgatgtgggtatgaaaggaagaatgggctttgctagagggagaagtgg
tgtagggcagagatggagtaattgcacaaatagccatgaacggccctgct
gtgttgtgggaagaaatgctcggggagggggggggggg
gaattcttccaaatacacccagttcctgtcagaatggagactgaaattct
gttctgagtatttttgtttcatgttgtcataatggaatacctgaagctgt
gactctcacaaagaaagaagttcgtttggtccacagttctgaggctgaga
gcttgtaggcataggcatcatgaggcaggagtatgagaaggacagaggct
gcaatgagagaggagagcaagcaagagtggctgcatggtgtgggaagaaa
taaggatgtgagctgggattagctcattatctacaccagtgagactcaag
cgtcccatgagaccagcactcatctcctgacaagggaaaacaatccaatt
acttcctaagtagagacactgcctcttaaaagttcctgccaccttttacc
ccttttacagtagggccaagcttgtggtacatgaaccacatttgaactac
aacacctgggccttaacatccaatctaccttgggaaggggatgggtggag
ggtagttgtacctgtatgtgtgtatgtgcacatgctactagtgtggatgc
atgagtatttgtgtgtgtgcatttagaggccaaagatttaaccctcccta
ctcatgggggggggttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195416815_195416952
seq2: B6Ng01-233A15.b_50_187

seq1  TTTGATGTGGGTATGAAAGGAAGAATGGGCTTTGCTAGAGGGAGAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGGGTATGAAAGGAAGAATGGGCTTTGCTAGAGGGAGAAGTGG  50

seq1  TGTAGGGCAGAGATGGAGTAATTGCACAAATAGCCATGAACGGCCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCAGAGATGGAGTAATTGCACAAATAGCCATGAACGGCCCTGCT  100

seq1  GTGTTGTGGGAAGAAATGCTCGGGGAGGGGGGGGGGGG  138
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGGAAGAAATGCTCGGGGAGGGGGGGGGGGG  138

seq1: chr1_195555362_195555981
seq2: B6Ng01-233A15.g_65_685 (reverse)

seq1  AAAACAACCCCCCCCCATGAGTAGGGAGGGTT-AATCTTTGGCCTCTAAA  49
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAACAACCCCCCCCCATGAGTAGGGAGGGTTAAATCTTTGGCCTCTAAA  50

seq1  TGCACACACACAAATACTCATGCATCCACACTAGTAGCATGTGCACATAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACAAATACTCATGCATCCACACTAGTAGCATGTGCACATAC  100

seq1  ACACATACAGGTACAACTACCCTCCACCCATCCCCTTCCCAAGGTAGATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAGGTACAACTACCCTCCACCCATCCCCTTCCCAAGGTAGATT  150

seq1  GGATGTTAAGGCCCAGGTGTTGTAGTTCAAATGTGGTTCATGTACCACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTAAGGCCCAGGTGTTGTAGTTCAAATGTGGTTCATGTACCACAA  200

seq1  GCTTGGCCCTACTGTAAAAGGGGTAAAAGGTGGCAGGAACTTTTAAGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCCTACTGTAAAAGGGGTAAAAGGTGGCAGGAACTTTTAAGAGG  250

seq1  CAGTGTCTCTACTTAGGAAGTAATTGGATTGTTTTCCCTTGTCAGGAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTACTTAGGAAGTAATTGGATTGTTTTCCCTTGTCAGGAGAT  300

seq1  GAGTGCTGGTCTCATGGGACGCTTGAGTCTCACTGGTGTAGATAATGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGTCTCATGGGACGCTTGAGTCTCACTGGTGTAGATAATGAGC  350

seq1  TAATCCCAGCTCACATCCTTATTTCTTCCCACACCATGCAGCCACTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCTCACATCCTTATTTCTTCCCACACCATGCAGCCACTCTTG  400

seq1  CTTGCTCTCCTCTCTCATTGCAGCCTCTGTCCTTCTCATACTCCTGCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCCTCTCTCATTGCAGCCTCTGTCCTTCTCATACTCCTGCCTC  450

seq1  ATGATGCCTATGCCTACAAGCTCTCAGCCTCAGAACTGTGGACCAAACGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCTATGCCTACAAGCTCTCAGCCTCAGAACTGTGGACCAAACGA  500

seq1  ACTTCTTTCTTTGTGAGAGTCACAGCTTCAGGTATTCCATTATGACAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCTTTGTGAGAGTCACAGCTTCAGGTATTCCATTATGACAACA  550

seq1  TGAAACAAAAATACTCAGAACAGAATTTCAGTCTCCATTCTGACAGGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAAATACTCAGAACAGAATTTCAGTCTCCATTCTGACAGGAAC  600

seq1  TGGGTGTATTTGGAAGAATTC  620
      |||||||||||||||||||||
seq2  TGGGTGTATTTGGAAGAATTC  621