BAC Information

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BAC

Clone NameB6Ng01-234C11
Chromosome1 (Build37)
Map Location 98,465,912 - 98,578,466
singlet/doubletdoublet
Overlap geneGm1833
Upstream geneSt8sia4
Downstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234C11.bB6Ng01-234C11.g
ACCGA045996GA045997
length953983
definitionB6Ng01-234C11.b B6Ng01-234C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,577,513 - 98,578,466)(98,465,912 - 98,466,810)
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaacg
ttaagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaagggctaagatcaaaaattcaggtgacagc
agatgttggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggactgcaagcttgtacaaccactctggaaatcagtctggtggttcctct
gaaaattggatatagtactactagaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaacgggtgagaaggacacatgctccactat
gttcatagcagccttatttatttatttatttatttatttatttatttatt
tatttatttattttttaagttccatagctaagattcttgttaactattta
attttacaggttttagtccttttttttccattttttattaggtatttagc
tcatttacatttccaatgctataccaaaagtcccccatacccacccaccc
ccactcccctacccacccactccccctttttggccctggtgttcccctgt
actggggcatataaagtttgcaagtccagtgggcctctctttccagtgat
ggccaactaggccatcttttgatacatatgcagctagagtcaagagctct
ggggtactggttagttcataatgttgttccacctatagggttacagatcc
ctttagctccttgggtactttctctagctcctccattgggagccctgtga
tccatccatagctgactgtgagcatccactactgtgtttgctaggccccg
gcattagtctcacaagagacagctatatctgggtcctttccaaaaaaatc
tgatagtgtatgcaagggtgtcgcggttggatgctgatcctggggtgaat
ccc
gaattcaatatgtagtacaggctggccttcaactcacagaaatctgccta
ccattacttggaatactggagttaaaggtgcttaccaccatacccagtct
gattcaagacttttactctttttcaaaagtctgacacatctttaaaattc
aagattcatagcaccatctagtggatttatcccaagttccagaaaaaaaa
aaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
aaagaaaaagaaaaaaaccttttaattcccaattacaaaataattgattt
tgtgttggtagattgcaaggctccagttctgaagtacatagctaaatatg
tgataacagaaatggaaattgtctagttgatgaacaaaatcctagctttg
tcctgctgttcacagcagcaatgaagcaggcaggtaagcaattttcactc
tccttccacccctccaaatttaatcccctggcctcatcaccaaacctcta
acagaccatgtgttctgcctctacgtcctgtctgcccctatctgtgaggt
gccacacagagcctagtggcacattctgtttttcttaatcacatggacat
ccttacattgttttatagcctatccccattcctgtcagctttcaatgcct
aaaaaaaattctacacaaaaacactagtggccaccccaggaaggatctca
aaatattctttatcagccattccataaccaccacagcctcctacgaattg
gagaatacaagacaaagcaaggaatgaaacagccacaaaacaaagacaag
atcatatatccccagacaaaaccagatgactaaatgctagcaacaagaac
acaatttaataaaagccaatacatgtacgggaaacttaatctagcaacat
ggctgctctgtgaaagggatcacatccaaagatcgtctagatctctgtga
tccacctggactgacacaacgtttaatcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98577513_98578466
seq2: B6Ng01-234C11.b_45_997 (reverse)

seq1  GGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACT  50
      ||||| |||||||  |||||||||||| ||| |||||| |||||||||||
seq2  GGGATTCACCCCAGGATCAGCATCCAACCGC-GACACCCTTGCATACACT  49

seq1  AGCAAGATTTTATT-GAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACT  99
      | | ||||||| || |||||||||||||| ||||||||||||||||||||
seq2  ATC-AGATTTTTTTGGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACT  98

seq1  -ATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATG  148
       ||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AATGCCGGGGCCTAGCAAACACAGTAGTGGATGCTCACAGTCAGCT-ATG  147

seq1  GATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAG  197

seq1  CTAAAGGGATCTGTAACCCTATAGGTGGAACAACATTATGAACTAACCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGATCTGTAACCCTATAGGTGGAACAACATTATGAACTAACCAG  247

seq1  TACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAG  297

seq1  TTGGCCATCACTGGAAAGAGAGGCCCACTGGACACGCAAACTTTATATGC  348
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TTGGCCATCACTGGAAAGAGAGGCCCACTGGACTTGCAAACTTTATATGC  347

seq1  CCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGG  397

seq1  GAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGT  447

seq1  AAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGGACTAAAACCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAGGACTAAAACCTG  497

seq1  TAAAATTAAATAGTTAACAAGAATCTTAGCTATGGAACTTAAAAAATAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAATAGTTAACAAGAATCTTAGCTATGGAACTTAAAAAATAAA  547

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGCTGCT  597

seq1  ATGAACATAGTGGAGCATGTGTCCTTCTCACCCGTTGGGACATCTTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATAGTGGAGCATGTGTCCTTCTCACCCGTTGGGACATCTTCTGG  647

seq1  ATATATGCCCAGGAGAGGTATTGCAGGATCCTCTAGTAGTACTATATCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCAGGAGAGGTATTGCAGGATCCTCTAGTAGTACTATATCCA  697

seq1  ATTTTCAGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTG  747

seq1  CAGTCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA  797

seq1  ACATCTGCTGTCACCTGAATTTTTGATCTTAGCCCTTCTGACTGGTGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCTGTCACCTGAATTTTTGATCTTAGCCCTTCTGACTGGTGTGA  847

seq1  GATGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGATGATTAAGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGATGATTAAGGAT  897

seq1  GCTTAACGTTTTTTCAGGTGCTTCTCAGCCATTCAGTATTCCTCAGGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACGTTTTTTCAGGTGCTTCTCAGCCATTCAGTATTCCTCAGGTGA  947

seq1  GAATTC  954
      ||||||
seq2  GAATTC  953

seq1: chr1_98465912_98466810
seq2: B6Ng01-234C11.g_65_964

seq1  GAATTCAATATGTAGTACAGGCTGGCCTTCAACTCACAGAAATCTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGTAGTACAGGCTGGCCTTCAACTCACAGAAATCTGCCTA  50

seq1  CCATTACTTGGAATACTGGAGTTAAAGGTGCTTACCACCATACCCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTTGGAATACTGGAGTTAAAGGTGCTTACCACCATACCCAGTCT  100

seq1  GATTCAAGACTTTTACTCTTTTTCAAAAGTCTGACACATCTTTAAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGACTTTTACTCTTTTTCAAAAGTCTGACACATCTTTAAAATTC  150

seq1  AAGATTCATAGCACCATCTAGTGGATTTATCCCAAGTTCCAGAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATAGCACCATCTAGTGGATTTATCCCAAGTTCCAGAAAAAAAA  200

seq1  AAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  250

seq1  AAAGAAAAAGAAAAAAACCTTTTAATTCCCAATTACAAAATAATTGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAAAACCTTTTAATTCCCAATTACAAAATAATTGATTT  300

seq1  TGTGTTGGTAGATTGCAAGGCTCCAGTTCTGAAGTACATAGCTAAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGTAGATTGCAAGGCTCCAGTTCTGAAGTACATAGCTAAATATG  350

seq1  TGATAACAGAAATGGAAATTGTCTAGTTGATGAACAAAATCCTAGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAGAAATGGAAATTGTCTAGTTGATGAACAAAATCCTAGCTTTG  400

seq1  TCCTGCTGTTCACAGCAGCAATGAAGCAGGCAGGTAAGCAATTTTCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGTTCACAGCAGCAATGAAGCAGGCAGGTAAGCAATTTTCACTC  450

seq1  TCCTTCCACCCCTCCAAATTTAATCCCCTGGCCTCATCACCAAACCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACCCCTCCAAATTTAATCCCCTGGCCTCATCACCAAACCTCTA  500

seq1  ACAGACCATGTGTTCTGCCTCTACGTCCTGTCTGCCCCTATCTGTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCATGTGTTCTGCCTCTACGTCCTGTCTGCCCCTATCTGTGAGGT  550

seq1  GCCACACAGAGCCTAGTGGCACATTCTGTTTTTCTTAATCACATGGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAGAGCCTAGTGGCACATTCTGTTTTTCTTAATCACATGGACAT  600

seq1  CCTTACATTGTTTTATAGCCTATCCCCATTCCTGTCAGCTTTCAATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTGTTTTATAGCCTATCCCCATTCCTGTCAGCTTTCAATGCCT  650

seq1  AAAAAAAATTCTACACAAAAACACTAGTGGCCACCCCAGGAAGGATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTCTACACAAAAACACTAGTGGCCACCCCAGGAAGGATCTCA  700

seq1  AAATATTCTTTATCAGCCATTCCATAACCACCACAGCCTCCTACGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTTTATCAGCCATTCCATAACCACCACAGCCTCCTACGAATTG  750

seq1  GAGAATACAAGACAAAGCAAGGAATGAAACAGCCACAAAACAAAGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACAAGACAAAGCAAGGAATGAAACAGCCACAAAACAAAGACAAG  800

seq1  ATCATATATCCCCAGACAAAACCAGATGACTAAATGCTAGCAACAAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATCCCCAGACAAAACCAGATGACTAAATGCTAGCAACAAGAAC  850

seq1  ACAA-TTAATAAAAGCCAATACATGTACGGGAAACTTAATCTAGCAACAT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAATAAAAGCCAATACATGTACGGGAAACTTAATCTAGCAACAT  900