BAC Information

Click to search

BAC

Clone NameB6Ng01-234E12
Chromosome1 (Build37)
Map Location 87,644,756 - 87,645,920
singlet/doubletsinglet
Overlap geneA630001G21Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100
Downstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234E12.bB6Ng01-234E12.g
ACCGA046089GA046090
length8221,148
definitionB6Ng01-234E12.b B6Ng01-234E12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaaattgctgggagatattaattggctgagaccaattttgaa
aattccatcagtagaattaaagcccttatttgatatattagagggagata
cccacatctcctcccacagagcacttaccccagctgcatgtcaagcttta
caaactatagaaaaggccttacaagatgctcaattacaatgcattgacaa
gtcgaagtcatttgaattgtgcgtattaaaaatcgcacagttaccaacag
cagtcttgtggcaaaatggacccttattgtgggtctaccctaatgcttcc
tctgcaaaaatcattgaatggtatcctaatgcagttgctcaacttgcact
tcgggggataaaagcagccattactcattttgggaaagaacctaattgtg
ccttatacttctgctcaagttcaaaccctggcagcaacaactaatgattg
ggcagtcttggttgcctcctattcaggacaaattgataatcattatccaa
aacatccaatcttacagtttgccttaagccaagccatagtgtttccagta
atgacagccaaacaaccacttgcggatggggtggtggagtatacagatgg
atccaaatctggcataggtgcatatgtagtaaatggccaagtaacatcca
aacaatataatgagacatcaccccaggttgtagagtgtttggtggtactg
gaggtccttaaaactttcccaggactgctcaatattgtatctgattcctt
atatgtggttaatgcagttaatacgcttgaagttgctggtttaattagac
cctctagcaagcttgctcacat
gaattctgttgtgtggtatgatttttgtggcattccttggctcccaatgg
ccacgatactctttcaacacataaccctctcaatgagggctagcagttgg
aaaaaaaaaccctccaggagcacaggactacaaggaggaaacagccatgg
atggatggtcctacccatacactgtgcacacctttagtgtccaggagacc
tggaaaggcaactgaggggggaatctagaagccatgtctccctagtaagc
cgctaaatacaatggaggccaggactgtggtgcacacctttaatcccagc
ccttgggagtcggaggcaggaaaatctcttgtgagttcaaggtcaaggta
tctacacagtgagttccaggacagtcaggactgcatgaagagacccttcc
tcaaaataaatagataaatagacgaatagataaataaataaataaataaa
taaataaataaataaaatttgtttataagacaggatctcactatgatgtg
atagaaggcctagaactcattatatatgccaagttggcctcggactcaga
tatctgcctgctttggcccccaagtgctgagattaaaggcctgctctacc
acctctggctacaatggatatagtcacttaaagtctgaaaacctagaaga
aagatagtgacataagcactgaaaataaaattcaggagctggggatatgg
ttccagtgttcaaatgcttgcctggaatgcatgaagccctgggtttgatc
cccagaaccacctaaaatgggcgtggtcacagacacacacacacacacac
acacacataaccctagcacttgagaaatggagacaggaagatcctcctcc
cgtgtcaccagccttggccacagagtgaccctgaggccagttggactaca
cacagaggtccaagatttcagggagacttccatgggcctgacgtcaagtt
tttgagaagaaagactcctaggaatgtcgcagacacttgtccactgggga
gggagctgctgcctcgtagaagagctgccttactgaagtaactgaacaga
accgccgtttgcgaagctggagctcgcaatctagactctgattgctacag
cattggttcgaagagcaactgtggagtaggataacgaataatcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87644756_87645920
seq2: B6Ng01-234E12.g_63_1210

seq1  GAATTCTGTTGTGTGGTATGATTTTTGTGGCATTCCTTGGCTCCCAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGTGTGGTATGATTTTTGTGGCATTCCTTGGCTCCCAATGG  50

seq1  CCACGATACTCTTTCAACACATAACCCTCTCAATGAGGGCTAGCAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGATACTCTTTCAACACATAACCCTCTCAATGAGGGCTAGCAGTTGG  100

seq1  AAAAAAAAACCCTCCAGGAGCACAGGACTACAAGGAGGAAACAGCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCCTCCAGGAGCACAGGACTACAAGGAGGAAACAGCCATGG  150

seq1  ATGGATGGTCCTACCCATACACTGTGCACACCTTTAGTGTCCAGGAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGTCCTACCCATACACTGTGCACACCTTTAGTGTCCAGGAGACC  200

seq1  TGGAAAGGCAACTGAGGGGGGAATCTAGAAGCCATGTCTCCCTAGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGCAACTGAGGGGGGAATCTAGAAGCCATGTCTCCCTAGTAAGC  250

seq1  CGCTAAATACAATGGAGGCCAGGACTGTGGTGCACACCTTTAATCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAATACAATGGAGGCCAGGACTGTGGTGCACACCTTTAATCCCAGC  300

seq1  CCTTGGGAGTCGGAGGCAGGAAAATCTCTTGTGAGTTCAAGGTCAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGTCGGAGGCAGGAAAATCTCTTGTGAGTTCAAGGTCAAGGTA  350

seq1  TCTACACAGTGAGTTCCAGGACAGTCAGGACTGCATGAAGAGACCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGTGAGTTCCAGGACAGTCAGGACTGCATGAAGAGACCCTTCC  400

seq1  TCAAAATAAATAGATAAATAGACGAATAGATAAATAAATAAATAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAATAGATAAATAGACGAATAGATAAATAAATAAATAAATAAA  450

seq1  TAAATAAATAAATAAAATTTGTTTATAAGACAGGATCTCACTATGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAAATTTGTTTATAAGACAGGATCTCACTATGATGTG  500

seq1  ATAGAAGGCCTAGAACTCATTATATATGCCAAGTTGGCCTCGGACTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGCCTAGAACTCATTATATATGCCAAGTTGGCCTCGGACTCAGA  550

seq1  TATCTGCCTGCTTTGGCCCCCAAGTGCTGAGATTAAAGGCCTGCTCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCTGCTTTGGCCCCCAAGTGCTGAGATTAAAGGCCTGCTCTACC  600

seq1  ACCTCTGGCTACAATGGATATAGTCACTTAAAGTCTGAAAACCTAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGCTACAATGGATATAGTCACTTAAAGTCTGAAAACCTAGAAGA  650

seq1  AAGATAGTGACATAAGCACTGAAAATAAAATTCAGGAGCTGGGGATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTGACATAAGCACTGAAAATAAAATTCAGGAGCTGGGGATATGG  700

seq1  TTCCAGTGTTCAAATGCTTGCCTGGAATGCATGAAGCCCTGGGTTTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGTTCAAATGCTTGCCTGGAATGCATGAAGCCCTGGGTTTGATC  750

seq1  CCCAGAACCACCTAAAATGGGCGTGGTCACAGACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACCACCTAAAATGGGCGTGGTCACAGACACACACACACACACAC  800

seq1  ACACACATAACCCTAGCACTTGAGAAATGGAGACAGGAAGATCCTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAACCCTAGCACTTGAGAAATGGAGACAGGAAGATCCTCCTCC  850

seq1  CGTGTCACCAGCCTTGGCCACAGAGTGACCCTGAGGCCAGTTGGACTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCACCAGCCTTGGCCACAGAGTGACCCTGAGGCCAGTTGGACTACA  900

seq1  CACAGAGGTCCAAGATTTCAGGGAGACTTCCATGGGCCTGACGTCAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTCCAAGATTTCAGGGAGACTTCCATGGGCCTGACGTCAAGTT  950

seq1  TTTGAG-AGAAAGACTCCTAGGAATGTCGCAGACAACTTGTCCACTGGGA  999
      |||||| ||||||||||||||||||||||||||| |||||||||||||| 
seq2  TTTGAGAAGAAAGACTCCTAGGAATGTCGCAGAC-ACTTGTCCACTGGGG  999

seq1  GGGGAGCCTGCTTGCCTCGTAGAAGAGCTGGCCTTACCTGAAAGGTAACT  1049
       ||||| |||| ||||||||||||||||| |||||| |||||  ||||||
seq2  AGGGAG-CTGC-TGCCTCGTAGAAGAGCT-GCCTTA-CTGAA--GTAACT  1043

seq1  GAACAGGAACGCCGTTGCGGAAGCTGAAGGCTCCGCATTCCTAGGACTCT  1099
      |||||| | |||||||   ||||||| | ||| |||| | ||| ||||||
seq2  GAACAGAACCGCCGTTTGCGAAGCTGGA-GCT-CGCAAT-CTA-GACTCT  1089

seq1  GGTGTTGCTACAGGGAATGGGTCGAAAGGGAGGCAGCTGTGGAGTAGGCA  1149
      |   |||||||| | | ||| |||||   || ||| ||||||||||||  
seq2  G--ATTGCTACA-GCATTGGTTCGAA---GA-GCAACTGTGGAGTAGGAT  1132

seq1  AAGGAGTAATCAGTGG  1165
      || || ||||||||||
seq2  AACGAATAATCAGTGG  1148