BAC Information

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BAC

Clone NameB6Ng01-234G18
Chromosome1 (Build37)
Map Location 88,144,871 - 88,330,350
singlet/doubletdoublet
Overlap geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234G18.bB6Ng01-234G18.g
ACCGA046192GA046193
length3581,108
definitionB6Ng01-234G18.b B6Ng01-234G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,329,993 - 88,330,350)(88,144,871 - 88,145,984)
sequence
atgtgtggagagatatttttcctcacctatagctgcagtttgaaagtatt
aatactagaagttggtagacaacctgtttcctcattggttgacatataaa
attcagatgtaaagtaatatttttttttagttcatggagttgggcagagc
gatgaagaagatccaaacgtcctgtctccaaagcacactatcgaaggaaa
gctgtgggagggactcacaagcttatgtggtgtggctggcatgctctagg
gtccatgcgtgggctgcgcctggccttggacctacatctggtcccatgta
tggccctggtcctgcttgtgagaaagctgattttttttttgggggggggg
ggcgtgtg
gaattctgtacagacataccttgtgtcttagtactcttcaattgctgtga
agagacaccatgaccaaagatacttataaaggagagcatctaactggggc
ttgtttacagtttcaccatgccagggagcctggcaacaggcaggcaggca
tagtgctggagcagtatctgagaacttacattctgacctgcattcaggag
gcagagagagactttggaaacctccaagcccaccaactaatgacctttta
cttcctttatcagccacttatgcccaacctctgcattgcagctaatatcc
catcgattgctcagtgaaactgagagtgtgtagcacagatctctagtctc
caggaagggaccctaaagccaagaatgcagtgaagataatgtctgattcc
cataggaaagccctcatcgttgataaagactgtgtctgggaccaatagaa
aagtcctgttagccctcccacctgctgacagacagacagacagacagaca
gacagagactgtaaagacattgagtcatgacttaactctctgtgactata
aaaggtcatgtcgctccttcaggatgacttgaatccatggtcctgaacca
tggtcattcatggtcagaataaattatttcctttaaagcagagttgttat
tttacattcacaaactgtgattttttttttgacatctacattaggatgaa
tttgtaatgttttctactaagagataaacgatgacaagaaatatttaaca
aggtatgtatggacagaattctcttagcccatgaagtcccaaccaggaat
gtctcttctgataagggaaggtcagctttcacatgaagtttttatcactt
gtttctatgaagaaaagcagagaggtcagaggacattcttgcatctgttc
tttctcagtgtctttagctcaaaataacctgtatgccaaagtgggcctgt
gttaagagtgatactcgaccacccctcacctatgagacttagaagcattc
atgtttccttgcacagagttgacatggacagacagccagcatcactaatc
ccatgcaggcaaatgtcttctctgcagatgtcgcaaagcagcttgtgaga
cagcacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88329993_88330350
seq2: B6Ng01-234G18.b_51_408 (reverse)

seq1  CACACGCCCCCCCCCCCCAAAAAAAAAATCAGCTTTCTCACAAGCAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCCCCCCCCCCCCAAAAAAAAAATCAGCTTTCTCACAAGCAGGAC  50

seq1  CAGGGCCATACATGGGACCAGATGTAGGTCCAAGGCCAGGCGCAGCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCATACATGGGACCAGATGTAGGTCCAAGGCCAGGCGCAGCCCAC  100

seq1  GCATGGACCCTAGAGCATGCCAGCCACACCACATAAGCTTGTGAGTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGACCCTAGAGCATGCCAGCCACACCACATAAGCTTGTGAGTCCCT  150

seq1  CCCACAGCTTTCCTTCGATAGTGTGCTTTGGAGACAGGACGTTTGGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCTTTCCTTCGATAGTGTGCTTTGGAGACAGGACGTTTGGATCT  200

seq1  TCTTCATCGCTCTGCCCAACTCCATGAACTAAAAAAAAATATTACTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCGCTCTGCCCAACTCCATGAACTAAAAAAAAATATTACTTTAC  250

seq1  ATCTGAATTTTATATGTCAACCAATGAGGAAACAGGTTGTCTACCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTTTATATGTCAACCAATGAGGAAACAGGTTGTCTACCAACTT  300

seq1  CTAGTATTAATACTTTCAAACTGCAGCTATAGGTGAGGAAAAATATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTAATACTTTCAAACTGCAGCTATAGGTGAGGAAAAATATCTCT  350

seq1  CCACACAT  358
      ||||||||
seq2  CCACACAT  358

seq1: chr1_88144871_88145984
seq2: B6Ng01-234G18.g_65_1172

seq1  GAATTCTGTACAGACATACCTTGTGTCTTAGTACTCTTCAATTGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACAGACATACCTTGTGTCTTAGTACTCTTCAATTGCTGTGA  50

seq1  AGAGACACCATGACCAAAGATACTTATAAAGGAGAGCATCTAACTGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACCATGACCAAAGATACTTATAAAGGAGAGCATCTAACTGGGGC  100

seq1  TTGTTTACAGTTTCACCATGCCAGGGAGCCTGGCAACAGGCAGGCAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACAGTTTCACCATGCCAGGGAGCCTGGCAACAGGCAGGCAGGCA  150

seq1  TAGTGCTGGAGCAGTATCTGAGAACTTACATTCTGACCTGCATTCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGGAGCAGTATCTGAGAACTTACATTCTGACCTGCATTCAGGAG  200

seq1  GCAGAGAGAGACTTTGGAAACCTCCAAGCCCACCAACTAATGACCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGACTTTGGAAACCTCCAAGCCCACCAACTAATGACCTTTTA  250

seq1  CTTCCTTTATCAGCCACTTATGCCCAACCTCTGCATTGCAGCTAATATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTATCAGCCACTTATGCCCAACCTCTGCATTGCAGCTAATATCC  300

seq1  CATCGATTGCTCAGTGAAACTGAGAGTGTGTAGCACAGATCTCTAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATTGCTCAGTGAAACTGAGAGTGTGTAGCACAGATCTCTAGTCTC  350

seq1  CAGGAAGGGACCCTAAAGCCAAGAATGCAGTGAAGATAATGTCTGATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGACCCTAAAGCCAAGAATGCAGTGAAGATAATGTCTGATTCC  400

seq1  CATAGGAAAGCCCTCATCGTTGATAAAGACTGTGTCTGGGACCAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAAGCCCTCATCGTTGATAAAGACTGTGTCTGGGACCAATAGAA  450

seq1  AAGTCCTGTTAGCCCTCCCACCTGCTGACAGACAGACAGACAGACAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGTTAGCCCTCCCACCTGCTGACAGACAGACAGACAGACAGACA  500

seq1  GACAGAGACTGTAAAGACATTGAGTCATGACTTAACTCTCTGTGACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACTGTAAAGACATTGAGTCATGACTTAACTCTCTGTGACTATA  550

seq1  AAAGGTCATGTCGCTCCTTCAGGATGACTTGAATCCATGGTCCTGAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATGTCGCTCCTTCAGGATGACTTGAATCCATGGTCCTGAACCA  600

seq1  TGGTCATTCATGGTCAGAATAAATTATTTCCTTTAAAGCAGAGTTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTCATGGTCAGAATAAATTATTTCCTTTAAAGCAGAGTTGTTAT  650

seq1  TTTACATTCACAAACTGTGATTTTTTTTTTGACATCTACATTAGGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCACAAACTGTGATTTTTTTTTTGACATCTACATTAGGATGAA  700

seq1  TTTGTAATGTTTTCTACTAAGAGATAAACGATGACAAGAAATATTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGTTTTCTACTAAGAGATAAACGATGACAAGAAATATTTAACA  750

seq1  AGGTATGTATGGACAGAATTCTCTTAGCCCATGAAGTCCCAACCAGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTATGGACAGAATTCTCTTAGCCCATGAAGTCCCAACCAGGAAT  800

seq1  GTCTCTTCTGATAA-GGAAGGTCAGCTTTCACATGAAGTTTTTATCACTT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTGATAAGGGAAGGTCAGCTTTCACATGAAGTTTTTATCACTT  850

seq1  GTTTCTATGAAGAAAAGCAGAGAGGTCAGAGGACATTCTTGCATCTGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATGAAGAAAAGCAGAGAGGTCAGAGGACATTCTTGCATCTGTTC  900

seq1  TTTCTCAAGTGTCTTTAGCTCAAAATAACCTGTATGCCAAAGT-GGCCTG  948
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTC-AGTGTCTTTAGCTCAAAATAACCTGTATGCCAAAGTGGGCCTG  949

seq1  TG-TAAGAGTGATACTCGACCA-CCCTCACCTATGAGACTTAGAAGCATT  996
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTAAGAGTGATACTCGACCACCCCTCACCTATGAGACTTAGAAGCATT  999

seq1  CATGTTTCCTTGCACAGGAAGTTGACATGGACAGACAG-CAGCATCAACT  1045
      |||||||||||||||||  ||||||||||||||||||| ||||||| |||
seq2  CATGTTTCCTTGCACAG--AGTTGACATGGACAGACAGCCAGCATC-ACT  1046

seq1  AATCCCATGCAGGCAAATGTCCTTCCTCTTGCAGATGTCGGCAAAGGCAG  1095
      |||||||||||||||||||||  | ||| |||||||||| ||||| ||||
seq2  AATCCCATGCAGGCAAATGTC--TTCTC-TGCAGATGTC-GCAAA-GCAG  1091

seq1  CCTTGTGAAGACAGCACTA  1114
       |||||| |||||||||||
seq2  -CTTGTG-AGACAGCACTA  1108