BAC Information

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BAC

Clone NameB6Ng01-234I13
Chromosome1 (Build37)
Map Location 197,006,543 - 197,133,608
singlet/doubletdoublet
Overlap geneEG635956, LOC623380
Upstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234I13.bB6Ng01-234I13.g
ACCGA046272GA046273
length1,0811,022
definitionB6Ng01-234I13.b B6Ng01-234I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(197,006,543 - 197,007,639)(197,132,592 - 197,133,608)
sequence
gaattcactctttctctaagaaatgatggttcttcctcctcctcttgtct
actttcccaacccccctccttcttctccttcttctccttctcctccttct
tctccttcatcttatcaaggtgcacgttttcattttgcttttctcatgat
gattagaatcaaaactctgaacactacattcatgactagtggagcaccat
tgcttctttactttctcagcagacacaacaagaacaggtatgcatgaaga
atcaaaagtagtcctgtgtctatgtaaaccttttcctttcttaaatctgc
ctttgattcatgctgtgccttccaatttcagtctattaccatcgattttc
cctaccttatcttatatctatatttgtaactctgttctccaaaggcaagt
tacttagtactacagtatatttacttatttactctacagagaaaatatag
gttgctaaaattatcatggcatttgtttatagcataaactgtgtaaatta
agtattttcctccagtgtgatggtgttaatcatttagattgacttatttc
tctttgtattacattttagtttatattttgtcatttttacttaggaaaaa
aacagttttaaatatcagaactgtatgaaaaatgtatgattagagaaatg
cctcttctgtttgttgtattcagcattttcttatttatctgtcctctttt
ttccccaatgagtacacacatatttgtgttcttatttctttttcacacat
aaaagaaagcatgctatacataggtgctcctttacttttttttttactta
acaaatatattagactttgccacatatagagtaaaaaatatgccttactc
tctttattgatgcatggcacttcattgaataggtgaattatgatttattc
agccattttcttatatgaacatgttaggttgttcataaaaactcttgata
ttatcagtctccaatcctcatcagaggcatagactagcagtgagattaga
aaacagatctttttacttttattttttctgtgtgatgtatacattcatta
aatttcataaatgaaatgctgcaatgaaaaa

gaattctttatctttctacttcatcctcctaaaagttgaggccacaggcc
tctgccttcaggtcatgctcagtttaatcattgagggctagagttatcat
gtttgtttcttttcctctgaatttaaattgccagttcttctttagattaa
aacaaccaaaagaagagaaaggaggaggaggagaaggaggaggactcatt
ttacaaattttcttcttcttcttcttcttttttttgtaggtgctgcactt
atcctctggaaaatattttgatagatatatccttatattatatgccaagg
attctgggaaataccctatcttaatgaaatgagatgtttttgtatctcct
tcaattgagacatctggactgcaatagactatcttattctctaactatat
aacttgatggctgtgttcttcatctctaacttttatcttatttgcaacaa
atggtagtcattaggagcatcaaaaaatactgtttttaatatgtattggt
gtgaattttcttttgtttagacaatctattggaaatcctaaatttttaca
ctagtttcttctgtcctaataattaaatttctatttgtttacttgagaga
tccttttatcgtcttaaaatttgatattttaattgatagaaatcagatac
ataagtaaattcgttgactgactcaacataattgctctaaccactacttc
attggtttaactttaaatttcattcttccaaattcttctctcaagtgaca
agaaattattctccttatctgtagtgagtccaatgtgacaggaataaaat
aagacttggaatgtgactattgtgggcagtatcttggggattgagcactt
ttttttttttttttattttgggctaatatcccactcattagtgagtgcgt
gccatgcatggtccttttggggtcttgagttatttcacctcagatgatat
tttctagttccatccatttggcctgccaaacctcagatgtcctcataact
tttttttttttattacgtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_197006543_197007639
seq2: B6Ng01-234I13.b_45_1125

seq1  GAATTCACTCTTTCTCTAAGAAATGATGGTTCTTCCTCCTCCTCTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTTCTCTAAGAAATGATGGTTCTTCCTCCTCCTCTTGTCT  50

seq1  ACTTTCCCAACCCCCCTCCTTCTTCTCCTTCTTCTCCTTCTCCTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCAACCCCCCTCCTTCTTCTCCTTCTTCTCCTTCTCCTCCTTCT  100

seq1  TCTCCTTCATCTTATCAAGGTGCACGTTTTCATTTTGCTTTTCTCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATCTTATCAAGGTGCACGTTTTCATTTTGCTTTTCTCATGAT  150

seq1  GATTAGAATCAAAACTCTGAACACTACATTCATGACTAGTGGAGCACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAATCAAAACTCTGAACACTACATTCATGACTAGTGGAGCACCAT  200

seq1  TGCTTCTTTACTTTCTCAGCAGACACAACAAGAACAGGTATGCATGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTACTTTCTCAGCAGACACAACAAGAACAGGTATGCATGAAGA  250

seq1  ATCAAAAGTAGTCCTGTGTCTATGTAAACCTTTTCCTTTCTTAAATCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGTAGTCCTGTGTCTATGTAAACCTTTTCCTTTCTTAAATCTGC  300

seq1  CTTTGATTCATGCTGTGCCTTCCAATTTCAGTCTATTACCATCGATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTCATGCTGTGCCTTCCAATTTCAGTCTATTACCATCGATTTTC  350

seq1  CCTACCTTATCTTATATCTATATTTGTAACTCTGTTCTCCAAAGGCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTATCTTATATCTATATTTGTAACTCTGTTCTCCAAAGGCAAGT  400

seq1  TACTTAGTACTACAGTATATTTACTTATTTACTCTACAGAGAAAATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTACTACAGTATATTTACTTATTTACTCTACAGAGAAAATATAG  450

seq1  GTTGCTAAAATTATCATGGCATTTGTTTATAGCATAAACTGTGTAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAAAATTATCATGGCATTTGTTTATAGCATAAACTGTGTAAATTA  500

seq1  AGTATTTTCCTCCAGTGTGATGGTGTTAATCATTTAGATTGACTTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCCTCCAGTGTGATGGTGTTAATCATTTAGATTGACTTATTTC  550

seq1  TCTTTGTATTACATTTTAGTTTATATTTTGTCATTTTTACTTAGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATTACATTTTAGTTTATATTTTGTCATTTTTACTTAGGAAAAA  600

seq1  AACAGTTTTAAATATCAGAACTGTATGAAAAATGTATGATTAGAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTAAATATCAGAACTGTATGAAAAATGTATGATTAGAGAAATG  650

seq1  CCTCTTCTGTTTGTTGTATTCAGCATTTTCTTATTTATCTGTCCTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGTTTGTTGTATTCAGCATTTTCTTATTTATCTGTCCTCTTTT  700

seq1  TTCCCCAATGAGTACACACATATTTGTGTTCTTATTTCTTTTTCACACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAATGAGTACACACATATTTGTGTTCTTATTTCTTTTTCACACAT  750

seq1  AAAAGAAAGCATGCTATACATAGGTGCTCCTTTAC-TTTTTTTTTACTTA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAGAAAGCATGCTATACATAGGTGCTCCTTTACTTTTTTTTTTACTTA  800

seq1  ACAAATATATTAGACTTTGCCACATATAGAGTAAAAAATATGCCTTACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATATTAGACTTTGCCACATATAGAGTAAAAAATATGCCTTACTC  850

seq1  TCTTTATTGATGCATGGCACTTCATTGAATAGGTGAATTATGATTTATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGATGCATGGCACTTCATTGAATAGGTGAATTATGATTTATTC  900

seq1  AGCCATTTTCTTATATGAACATGTTAGGTTGTTCAATAAAAACTCTTGAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCCATTTTCTTATATGAACATGTTAGGTTGTTC-ATAAAAACTCTTGAT  949

seq1  ATTATCAGTCTCCAATCCTCAATCAAGAGGCATAGACTAGCAGGTGAGAT  999
      |||||||||||||||||||| ||| ||||||||||||||||| |||||||
seq2  ATTATCAGTCTCCAATCCTC-ATC-AGAGGCATAGACTAGCA-GTGAGAT  996

seq1  TAGAAAACAAGATTCTTTTTTACTTTTA-TTTTTCTGTTGTTGGATGTAT  1048
      |||||||| ||||   |||||||||||| |||||||| |||  |||||||
seq2  TAGAAAAC-AGAT--CTTTTTACTTTTATTTTTTCTG-TGT--GATGTAT  1040

seq1  ACATTCAATTAAAATTTTCATAAATGAAATTGCTTGGCCAAATGAAAAA  1097
      |||||| ||||||  |||||||||||||| ||||  ||  |||||||||
seq2  ACATTC-ATTAAA--TTTCATAAATGAAA-TGCT--GC--AATGAAAAA  1081


seq1: chr1_197132592_197133608
seq2: B6Ng01-234I13.g_67_1088 (reverse)

seq1  AAATACGTAATAAAAAAAAAA---GTATGAGGACATCCTGA-GTTTTGCA  46
      |||||||||||||||||||||    ||||||||||| |||| |||| |||
seq2  AAATACGTAATAAAAAAAAAAAAGTTATGAGGACAT-CTGAGGTTTGGCA  49

seq1  GG-CAAATGGATGGAACTAGAAAATATCATCCTGA-GTGAAATAACTC-A  93
      || ||||||||||||||||||||||||||| |||| |||||||||||| |
seq2  GGCCAAATGGATGGAACTAGAAAATATCAT-CTGAGGTGAAATAACTCAA  98

seq1  GA-CCCAAAAGGA-CATGCATGGCACGCACTCACTAATGAGT-GGATATT  140
      || |||||||||| |||||||||||||||||||||||||||| |||||||
seq2  GACCCCAAAAGGACCATGCATGGCACGCACTCACTAATGAGTGGGATATT  148

seq1  AGCCAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTCAATCCCCAAGATACT  190
      ||||    |||| |||||||||||||||||||||||||||||||||||||
seq2  AGCC---CAAAATAAAAAAAAAAAAAAAAGTGCTCAATCCCCAAGATACT  195

seq1  GCCCACAATAGTCACATTCCAAGTCTTATTTTATTCCTGTCACATTGGAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAATAGTCACATTCCAAGTCTTATTTTATTCCTGTCACATTGGAC  245

seq1  TCACTACAGATAAGGAGAATAATTTCTTGTCACTTGAGAGAAGAATTTGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAGATAAGGAGAATAATTTCTTGTCACTTGAGAGAAGAATTTGG  295

seq1  AAGAATGAAATTTAAAGTTAAACCAATGAAGTAGTGGTTAGAGCAATTAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAAATTTAAAGTTAAACCAATGAAGTAGTGGTTAGAGCAATTAT  345

seq1  GTTGAGTCAGTCAACGAATTTACTTATGTATCTGATTTCTATCAATTAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTCAGTCAACGAATTTACTTATGTATCTGATTTCTATCAATTAAA  395

seq1  ATATCAAATTTTAAGACGATAAAAGGATCTCTCAAGTAAACAAATAGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAATTTTAAGACGATAAAAGGATCTCTCAAGTAAACAAATAGAAA  445

seq1  TTTAATTATTAGGACAGAAGAAACTAGTGTAAAAATTTAGGATTTCCAAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATTAGGACAGAAGAAACTAGTGTAAAAATTTAGGATTTCCAAT  495

seq1  AGATTGTCTAAACAAAAGAAAATTCACACCAATACATATTAAAAACAGTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCTAAACAAAAGAAAATTCACACCAATACATATTAAAAACAGTA  545

seq1  TTTTTTGATGCTCCTAATGACTACCATTTGTTGCAAATAAGATAAAAGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATGCTCCTAATGACTACCATTTGTTGCAAATAAGATAAAAGTT  595

seq1  AGAGATGAAGAACACAGCCATCAAGTTATATAGTTAGAGAATAAGATAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAAGAACACAGCCATCAAGTTATATAGTTAGAGAATAAGATAGT  645

seq1  CTATTGCAGTCCAGATGTCTCAATTGAAGGAGATACAAAAACATCTCATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGTCCAGATGTCTCAATTGAAGGAGATACAAAAACATCTCATT  695

seq1  TCATTAAGATAGGGTATTTCCCAGAATCCTTGGCATATAATATAAGGATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGATAGGGTATTTCCCAGAATCCTTGGCATATAATATAAGGATA  745

seq1  TATCTATCAAAATATTTTCCAGAGGATAAGTGCAGCACCTACAAAAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCAAAATATTTTCCAGAGGATAAGTGCAGCACCTACAAAAAAAA  795

seq1  GAAGAAGAAGAAGAAGAAAATTTGTAAAATGAGTCCTCCTCCTTCTCCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAAATTTGTAAAATGAGTCCTCCTCCTTCTCCTC  845

seq1  CTCCTCCTTTCTCTTCTTTTGGTTGTTTTAATCTAAAGAAGAACTGGCAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTTCTCTTCTTTTGGTTGTTTTAATCTAAAGAAGAACTGGCAA  895

seq1  TTTAAATTCAGAGGAAAAGAAACAAACATGATAACTCTAGCCCTCAATGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCAGAGGAAAAGAAACAAACATGATAACTCTAGCCCTCAATGA  945

seq1  TTAAACTGAGCATGACCTGAAGGCAGAGGCCTGTGGCCTCAACTTTTAGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGAGCATGACCTGAAGGCAGAGGCCTGTGGCCTCAACTTTTAGG  995

seq1  AGGATGAAGTAGAAAGATAAAGAATTC  1017
      |||||||||||||||||||||||||||
seq2  AGGATGAAGTAGAAAGATAAAGAATTC  1022


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