BAC Information

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BAC

Clone NameB6Ng01-235C23
Chromosome1 (Build37)
Map Location 52,583,716 - 52,584,560
singlet/doubletsinglet
Overlap geneGm553
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, LOC100042094
Downstream geneEG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C23.bB6Ng01-235C23.g
ACCGA046727GA046728
length1,1951,166
definitionB6Ng01-235C23.b B6Ng01-235C23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagccctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttctttatatatattggatattagtccc
ctctctgatttaggataggtaaagatcctttcccactctgttgttgtctt
ttttgtcttgttgtcggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcagtaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttgtatgtggagttccttga
tccacttaaatttgaccttagtacaaggagataggaatggatcaattcgc
atttttctacatgataaccaccacttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggacggttttagctcccttgacgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactatagcagtaccatgcagttttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagagattctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatttgcagattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagatttgaagttcttatgat
acagatctttcactttccttagttagagtcacgccaagatattttatatt
atttgtgactattgagaaggtgttgttccctaatttctttcctcagcctt
tttattctttgtgtagaggaaaggccattgacctgttgagtagtttatat
ccagctacttcactgaagctgtttattagggttagagtctctggtgcatt
ttaggtccactatatactatctatcatcctggcaaaggaattgaacctac
tctttaccaattggaattcaccatgaatctaccttgatgtatgac
gaattctaagccaatggcataaacaagattttcaacaatattatgtaaga
aggcatccccaaactaaggaaagacatattcatactgaaagacccccatt
tcggggagaccctcgctcaagtcccgggatgagccgacgtcccaataact
tgagagaaaccattcttgatgcaatattgcatgaggtttattcagaaatc
agtatgctgaggccgagctcgtaacccacacaggggcagaggagatcaac
ccccagcagttgcagtcgagggtttttaaagactaaaccataaagtgaag
ggaggataagaccacaaagaacggggaagttgagtaaacatcgtaaaaat
gggaatggtgaattacatcttgtctgaaggctgaaggcgaaagaacaaag
aactccatgctgggcttcgtttctaggggtctaagaaacacattgagttg
gggccttacaatactgactcaaaaatcacacagaacaccaaaaaaagaca
agacaaggagagagaatgcccatggcacttcatagttaaaacactaagta
tacataacaaagaaaaagtaataaaaactgtaagagaaagaaatacgtat
cacatattaaggaaaacccatcagcccatttctcagtggaaacactgaaa
gccagaagaaactggagcaatgtactccaagttccaagtatattagtgta
ggctgtgtgtgacaactagcctatactaatatacacagtaaaactgtcca
gttaatttgaaggagaaagaaaaaattttcacaatataaacagcctaaaa
aattatatccaacaaaagaaacctgtggccttcccagcactgagcaggcc
tttcccagacttgtgcaggctgaacagatcttgaggctttccacaatgga
ccctaatgaccttgggggactcacctgcccttggaggcacgtgcaagttt
cctacaggacttagaagatagactgccctctgcccttgctttgcaacata
acccagctgaaacgaagatggggtctgtgggcttgccttatataaataca
gtgctgaatattaactgaagccttgaatcagaacctttgtcctagctcaa
ttcttcttctcggcacacttccccaatgcttgctctccaatctctgtgca
ttcacgcccccttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52583716_52584560
seq2: B6Ng01-235C23.g_394_1232

seq1  AGTTGAGTAAACATCGTAAAAATGGGAATGGTGAATTACATCTTGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTAAACATCGTAAAAATGGGAATGGTGAATTACATCTTGTCTGA  50

seq1  AGGCTGAAGGCGAAAGAACAAAGAACTCCATGCTGGGCTTCGTTTCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGGCGAAAGAACAAAGAACTCCATGCTGGGCTTCGTTTCTAGG  100

seq1  GGTCTAAGAAACACATTGAGTTGGGGCCTTACAATACTGACTCAAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGAAACACATTGAGTTGGGGCCTTACAATACTGACTCAAAAATC  150

seq1  ACACAGAACACCAAAAAAAGACAAGACAAGGAGAGAGAATGCCCATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACACCAAAAAAAGACAAGACAAGGAGAGAGAATGCCCATGGCA  200

seq1  CTTCATAGTTAAAACACTAAGTATACATAACAAAGAAAAAGTAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGTTAAAACACTAAGTATACATAACAAAGAAAAAGTAATAAAAA  250

seq1  CTGTAAGAGAAAGAAATACGTATCACATATTAAGGAAAACCCATCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAGAAAGAAATACGTATCACATATTAAGGAAAACCCATCAGCCC  300

seq1  ATTTCTCAGTGGAAACACTGAAAGCCAGAAGAAACTGGAGCAATGTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGTGGAAACACTGAAAGCCAGAAGAAACTGGAGCAATGTACTC  350

seq1  CAAGTTCCAAGTATATTAGTGTAGGCTGTGTGTGACAACTAGCCTATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAAGTATATTAGTGTAGGCTGTGTGTGACAACTAGCCTATACT  400

seq1  AATATACACAGTAAAACTGTCCAGTTAATTTGAAGGAGAAAGAAAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACACAGTAAAACTGTCCAGTTAATTTGAAGGAGAAAGAAAAAATT  450

seq1  TTCACAATATAAACAGCCTAAAAAATTATATCCAACAAAAGAAACCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATATAAACAGCCTAAAAAATTATATCCAACAAAAGAAACCTGTG  500

seq1  GCCTTCCCAGCACTGAGCAGGCCTTTCCCAGACTTGTGCAGGCTGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAGCACTGAGCAGGCCTTTCCCAGACTTGTGCAGGCTGAACAG  550

seq1  ATCTTGAGGCTTTCCACAATGGACCCTAATGACCTTGGGGGACTCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGGCTTTCCACAATGGACCCTAATGACCTTGGGGGACTCACCTG  600

seq1  -CCTTGGAGGCACGTGCAAG-TTCCTACAGGAACTTAGAAGAATAGACTG  648
       ||||||||||||||||||| |||||||||| ||||||||| ||||||||
seq2  CCCTTGGAGGCACGTGCAAGTTTCCTACAGG-ACTTAGAAG-ATAGACTG  648

seq1  CCCTCTGCCCTTGCTTTGCAACATAACCCAGCTGAAACGAAGGATGGGGT  698
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCTCTGCCCTTGCTTTGCAACATAACCCAGCTGAAACGAA-GATGGGGT  697

seq1  CTGTGGGCTTGCCCTATATAAATACAGTGCTGAATATTAAACTTGGAGCC  748
      ||||||||||||| ||||||||||||||||||||||||||   || ||||
seq2  CTGTGGGCTTGCCTTATATAAATACAGTGCTGAATATTAA--CTGAAGCC  745

seq1  TTG-ATCAGAACC-TTGTCTTGGCTTCATTCTTC-TCTCGCCACACTCCC  795
      ||| ||||||||| ||||| | |||  ||||||| ||||| |||||| ||
seq2  TTGAATCAGAACCTTTGTCCTAGCTCAATTCTTCTTCTCGGCACACTTCC  795

seq1  CCCATGGCCCTCCCCCCCCCCATCTCTTTTTCATTTCCAGCCCCCTTTTC  845
      || |||   ||   | | || ||||| | | || |||  |||||||||||
seq2  CCAATG---CT-TGCTCTCCAATCTC-TGTGCA-TTCACGCCCCCTTTTC  839