BAC Information

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BAC

Clone NameB6Ng01-235J10
Chromosome1 (Build37)
Map Location 68,919,354 - 69,027,554
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J10.bB6Ng01-235J10.g
ACCGA047028GA047029
length1,0871,185
definitionB6Ng01-235J10.b B6Ng01-235J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,026,480 - 69,027,554)(68,919,354 - 68,920,518)
sequence
gaattcaattttcttctctacacatgacttggttgaatattcttcaaggt
tagtgatcacatgaaatatactgagtgttctttaacattaaatacacaaa
acttctaataaattcagtataatgctgaaagcatgctatgtatttaataa
attagtaagacaatctttttaaagctgtagatgagaccataaaggctgta
gagtcttgcttgttgtaataatggctgtattacttccattgtctaaaaga
atgtttatccagttattttttttaaaaacattgaacacaaaagattgtga
gtgaattcttttatccatagggtaattataaatcagaaaggtatattttt
tgagaattgcttaatattgttctttgcccaatagggagagcataactgct
tttttctcttgtaaatatcctttttatttgatattttatttatttacatt
tcaaatgttattccctttcctggtttcccctctggagtccccctatctta
cccccatcccctgcttttgtgagggtactttcccaccccttcacccactc
ccacctccccacccaggcattccctacactgtgtcatcaaaccttcacag
gaccaagagcctctcctcctgttgatgccagataagaccatcctttgcta
tatatgtggctggagccatgggtccctccatgtgtcctccttgattggtg
ggttagtgcctgggagatttaggggggtctggttgtttgtttgatattgc
tgttcttcctatggggttgcaaactccttctgctcctttagtcttttctc
tactcttccatggggaccccatgctcagtccaatagttggctgggagcat
ctgcatctgtatttatcaggctctggcagaggctctcagagaaagctata
tttaggctcctgtcaagacaaaaatctttcactagtattatactgtgaac
aaaagttattttcctggtcttttgaatattgatcccatttttgaccccag
cattacatgtatatggtgtgaatatatggacaccattttagtagagatgt
gtgcagacattaaactacaccatatgactggttgaaa

gaattcagggggtggtaaatgtggtcacaaagtgacttgtccacacatca
gggagaggaaggatggtcttcttccattgttaataatgaccaggccactt
gagcttctgaacaagtcgagacagttttcttttccagtatttccctctca
tcaatttataatgggaatatgtacttttcagataggaactaattttgaag
taatataataaccttgaccttgattaccacatttacataaaaaacatttc
aagataaataacagcaaattatatgtcctctactgtggctggcaaatgta
gtaagatctgttttgtacaagtccagtggagttttcccacttggacaact
tccctgatcattagagtcacttgagtttctcgggctctgtcccaaaccca
ctaaatcatgatctccagggaaagtgcctgggaatttgtgtttttaagtg
gctcccccaggtgactttggtaattagccaattttagaaaaccctgaaat
gccactggaagtcaaaggatgccactttgtgtttcatatgtttgggtgaa
aacaaaaacaaaaacaatatctattgcagaacagacccaagccagttact
ctccttttacaaataagaaacaaaagtttcacaggccgctagacaaactg
ccaaataccacctatatttctgggtcagagacagattggaaatccaccaa
gagaaactgggcattcatacttgtctatttccatggcaggggcaaaacaa
ttctaatctcactgatcttttcattaaagaataaagcaatctcagagcat
taacttttgacagcaatgactaccatagatttcatggattaaccaaagca
caacaacctagaacatgcctacagaacaattctttgtttatgtagcacag
gaggcaaaaaaaagccaacattctgacttcaacagtagactttaattact
caatattaacaccttacgattgaaaaatctaatatacctcctccagcata
gcaacaagcttccaccaaaaaaagaatttggttaacataatacaaacatg
gcaaattaactgccaggctcaagtctcctccccatatgtttgttcaatct
ttatttcttcattgtgatccccatggaattaccaatgaatacctgggcca
gttgaaggactattgacctggaagtgtggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69026480_69027554
seq2: B6Ng01-235J10.b_48_1134 (reverse)

seq1  TTTCAAACAGTCATAT-GTGTATGTTTATGTCTGCACACATCTCTACTAA  49
      |||||| ||||||||| |||||  || |||||||||||||||||||||||
seq2  TTTCAACCAGTCATATGGTGTAGTTTAATGTCTGCACACATCTCTACTAA  50

seq1  A--TGTGTTCATATATTCACA-CATATACATGT-ATGCT-GGGTCAAAAA  94
      |   |||| |||||||||||| ||||||||||| ||||| ||||||||||
seq2  AATGGTGTCCATATATTCACACCATATACATGTAATGCTGGGGTCAAAAA  100

seq1  TGGGATCAATATTCAAA--GCCAG--AAATAAC-TTTGTTCACAGTAT-A  138
      |||||||||||||||||   ||||  ||||||| |||||||||||||| |
seq2  TGGGATCAATATTCAAAAGACCAGGAAAATAACTTTTGTTCACAGTATAA  150

seq1  TACTAGTG-AAGATTTTTGTCTTGACAGGAGCCT-AATATAGCTTTCTCC  186
      |||||||| ||||||||||||||||||||||||| ||||||||||||| |
seq2  TACTAGTGAAAGATTTTTGTCTTGACAGGAGCCTAAATATAGCTTTCT-C  199

seq1  TGAGAGCCTCTGCCAGAGCCTGATAAATACAGATGCAGATGCTCCCAGCC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCTCTGCCAGAGCCTGATAAATACAGATGCAGATGCTCCCAGCC  249

seq1  AACTATTGGACTGAGCATGGGGTCCCCATGGAAGAGTTAGAGAAAAGACT  286
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACTATTGGACTGAGCATGGGGTCCCCATGGAAGAG-TAGAGAAAAGACT  298

seq1  AAAGGAGCAGAAGGAGTTTGCAACCCCATAGGAAGAACAGCAATATCAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCAGAAGGAGTTTGCAACCCCATAGGAAGAACAGCAATATCAAA  348

seq1  CAAACAACCAGACCCCCCTAAATCTCCCAGGCACTAACCCACCAATCAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCAGACCCCCCTAAATCTCCCAGGCACTAACCCACCAATCAAG  398

seq1  GAGGACACATGGAGGGACCCATGGCTCCAGCCACATATATAGCAAAGGAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACATGGAGGGACCCATGGCTCCAGCCACATATATAGCAAAGGAT  448

seq1  GGTCTTATCTGGCATCAACAGGAGGAGAGGCTCTTGGTCCTGTGAAGGTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATCTGGCATCAACAGGAGGAGAGGCTCTTGGTCCTGTGAAGGTT  498

seq1  TGATGACACAGTGTAGGGAATGCCTGGGTGGGGAGGTGGGAGTGGGTGAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACACAGTGTAGGGAATGCCTGGGTGGGGAGGTGGGAGTGGGTGAA  548

seq1  GGGGTGGGAAAGTACCCTCACAAAAGCAGGGGATGGGGGTAAGATAGGGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGAAAGTACCCTCACAAAAGCAGGGGATGGGGGTAAGATAGGGG  598

seq1  GACTCCAGAGGGGAAACCAGGAAAGGGAATAACATTTGAAATGTAAATAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGAGGGGAAACCAGGAAAGGGAATAACATTTGAAATGTAAATAA  648

seq1  ATAAAATATCAAATAAAAAGGATATTTACAAGAGAAAAAAGCAGTTATGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATCAAATAAAAAGGATATTTACAAGAGAAAAAAGCAGTTATGC  698

seq1  TCTCCCTATTGGGCAAAGAACAATATTAAGCAATTCTCAAAAAATATACC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATTGGGCAAAGAACAATATTAAGCAATTCTCAAAAAATATACC  748

seq1  TTTCTGATTTATAATTACCCTATGGATAAAAGAATTCACTCACAATCTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTTATAATTACCCTATGGATAAAAGAATTCACTCACAATCTTT  798

seq1  TGTGTTCAATGTTTTTAAAAAAAATAACTGGATAAACATTCTTTTAGACA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAATGTTTTTAAAAAAAATAACTGGATAAACATTCTTTTAGACA  848

seq1  ATGGAAGTAATACAGCCATTATTACAACAAGCAAGACTCTACAGCCTTTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTAATACAGCCATTATTACAACAAGCAAGACTCTACAGCCTTTA  898

seq1  TGGTCTCATCTACAGCTTTAAAAAGATTGTCTTACTAATTTATTAAATAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCATCTACAGCTTTAAAAAGATTGTCTTACTAATTTATTAAATAC  948

seq1  ATAGCATGCTTTCAGCATTATACTGAATTTATTAGAAGTTTTGTGTATTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGCTTTCAGCATTATACTGAATTTATTAGAAGTTTTGTGTATTT  998

seq1  AATGTTAAAGAACACTCAGTATATTTCATGTGATCACTAACCTTGAAGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAAGAACACTCAGTATATTTCATGTGATCACTAACCTTGAAGAA  1048

seq1  TATTCAACCAAGTCATGTGTAGAGAAGAAAATTGAATTC  1075
      |||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACCAAGTCATGTGTAGAGAAGAAAATTGAATTC  1087


seq1: chr1_68919354_68920518
seq2: B6Ng01-235J10.g_64_1248

seq1  GAATTCAGGGGGTGGTAAATGTGGTCACAAAGTGACTTGTCCACACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGTGGTAAATGTGGTCACAAAGTGACTTGTCCACACATCA  50

seq1  GGGAGAGGAAGGATGGTCTTCTTCCATTGTTAATAATGACCAGGCCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGAAGGATGGTCTTCTTCCATTGTTAATAATGACCAGGCCACTT  100

seq1  GAGCTTCTGAACAAGTCGAGACAGTTTTCTTTTCCAGTATTTCCCTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTGAACAAGTCGAGACAGTTTTCTTTTCCAGTATTTCCCTCTCA  150

seq1  TCAATTTATAATGGGAATATGTACTTTTCAGATAGGAACTAATTTTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATAATGGGAATATGTACTTTTCAGATAGGAACTAATTTTGAAG  200

seq1  TAATATAATAACCTTGACCTTGATTACCACATTTACATAAAAAACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATAACCTTGACCTTGATTACCACATTTACATAAAAAACATTTC  250

seq1  AAGATAAATAACAGCAAATTATATGTCCTCTACTGTGGCTGGCAAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATAACAGCAAATTATATGTCCTCTACTGTGGCTGGCAAATGTA  300

seq1  GTAAGATCTGTTTTGTACAAGTCCAGTGGAGTTTTCCCACTTGGACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCTGTTTTGTACAAGTCCAGTGGAGTTTTCCCACTTGGACAACT  350

seq1  TCCCTGATCATTAGAGTCACTTGAGTTTCTCGGGCTCTGTCCCAAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATCATTAGAGTCACTTGAGTTTCTCGGGCTCTGTCCCAAACCCA  400

seq1  CTAAATCATGATCTCCAGGGAAAGTGCCTGGGAATTTGTGTTTTTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCATGATCTCCAGGGAAAGTGCCTGGGAATTTGTGTTTTTAAGTG  450

seq1  GCTCCCCCAGGTGACTTTGGTAATTAGCCAATTTTAGAAAACCCTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCAGGTGACTTTGGTAATTAGCCAATTTTAGAAAACCCTGAAAT  500

seq1  GCCACTGGAAGTCAAAGGATGCCACTTTGTGTTTCATATGTTTGGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGAAGTCAAAGGATGCCACTTTGTGTTTCATATGTTTGGGTGAA  550

seq1  AACAAAAACAAAAACAATATCTATTGCAGAACAGACCCAAGCCAGTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAATATCTATTGCAGAACAGACCCAAGCCAGTTACT  600

seq1  CTCCTTTTACAAATAAGAAACAAAAGTTTCACAGGCCGCTAGACAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTACAAATAAGAAACAAAAGTTTCACAGGCCGCTAGACAAACTG  650

seq1  CCAAATACCACCTATATTTCTGGGTCAGAGACAGATTGGAAATCCACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACCACCTATATTTCTGGGTCAGAGACAGATTGGAAATCCACCAA  700

seq1  GAGAAACTGGGCATTCATACTTGTCTATTTCCATGGCAGGGGCAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGGGCATTCATACTTGTCTATTTCCATGGCAGGGGCAAAACAA  750

seq1  TTCTAATCTCACTGATCTTTTCATTAAAGAATAAAGCAATCTCAGAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTCACTGATCTTTTCATTAAAGAATAAAGCAATCTCAGAGCAT  800

seq1  TAACTTTTGACAGCAATGACTACCATAGATTTCATGGATTAACCAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTGACAGCAATGACTACCATAGATTTCATGGATTAACCAAAGCA  850

seq1  CAAACAACCTAGAACATGCCTACAGAACAATTCTTTGTTTATGTAGCACA  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AACAACCTAGAACATGCCTACAGAACAATTCTTTGTTTATGTAGCACA  899

seq1  GGAGGC-AAAAAAAGCCAACATTCTGACTTCAACAGTAGACTTTAATTAC  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAAAAAAAGCCAACATTCTGACTTCAACAGTAGACTTTAATTAC  949

seq1  TCAATA-TAACA-CTTACGATTGAAATATCT-ATATA-CTCCT-CAGCAT  994
      |||||| ||||| ||||||||||||| |||| ||||| ||||| ||||||
seq2  TCAATATTAACACCTTACGATTGAAAAATCTAATATACCTCCTCCAGCAT  999

seq1  AGCAAC-AGC-TCCAC--AAAAAAG-ATTTGG-TAACATAATAC-AACAT  1037
      |||||| ||| |||||  ||||||| |||||| ||||||||||| |||||
seq2  AGCAACAAGCTTCCACCAAAAAAAGAATTTGGTTAACATAATACAAACAT  1049

seq1  -GCAAATTAACTGCCAGCCTCAAAGTCTC--TCACATATGTT--GTCAAT  1082
       |||||||||||||||| ||| |||||||   | ||||||||   |||||
seq2  GGCAAATTAACTGCCAGGCTC-AAGTCTCCTCCCCATATGTTTGTTCAAT  1098

seq1  CTTTATT--CTCA-TGTGATCCCCAT-GAATTACACATGAATA-CTTGGC  1127
      |||||||   ||| |||||||||||| |||||||  ||||||| || |||
seq2  CTTTATTTCTTCATTGTGATCCCCATGGAATTACCAATGAATACCTGGGC  1148

seq1  AAGTTGGAAGGACTATTGTAACT-GAAGTGTGGTGTTTG  1165
       |||| |||||||||||| | || ||||||||| |||||
seq2  CAGTT-GAAGGACTATTG-ACCTGGAAGTGTGGGGTTTG  1185


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