BAC Information

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BAC

Clone NameB6Ng01-235K09
Chromosome1 (Build37)
Map Location 27,892,082 - 28,040,546
singlet/doubletdoublet
Overlap geneEG433281
Upstream geneLOC677427, LOC100040952
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235K09.bB6Ng01-235K09.g
ACCGA047071GA047072
length2721,091
definitionB6Ng01-235K09.b B6Ng01-235K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,040,275 - 28,040,546)(27,892,082 - 27,893,182)
sequence
tagtctctgtactttaaatttttcagtttaataatctaaaagtattttgt
tttacttagtataatttgacaaatctcatatgaaagcaatgtgaaaaaaa
aataaagtgaaagttttaatggttaagcatgttcagaaattttagccaag
gcaaatacttaagacatgcaaaatcacaaattgcactagagaaatagtat
cgttaaaatgactggacatgacacagatacatgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgagaga
gaattccagtacttagcaagggcaagaagaatgaaatgagttcaagtcca
gtttggtctatctatctaattccaggctaaccatggctacacagcaaaac
cttgtatcaaaaaaaaaaaaaaaagaaaataaaacaatagcaacaaacaa
aggaaaacagcagatttttgtcatcataaagttattctaagttgccttgt
ataatcgtgaattttgtagatctaatatattcatttccacaaagcaatgt
aagttttctttgacaagtgagaaaccacttcataaattttaagtacatat
tcaatccaacatcttaaattgcctgacaaaattgtcaaacactttcaacc
attccatgtgaatgataattataagtttgtgtgttttaaattattgcaca
taatcaacaagcaaaactatacataaactaaatcagcctttctatcattt
ttaaattgatatagtttagaaaatataagcgttagcataatctttataga
tagaagttatatatatatttctttgttttcaataattatatttattctca
atatgtccaataaacaccgtcagatttttgtatgtttatggtatttgttg
ttgttttatgacataagctccagaattcttcaaaattttagactacaaaa
tattataaaagcaagtaattactactagatgttgaagaaacaggtatagt
catcattaggttatagtttatatgtacatagttcattgaatattttatcc
atgaacttgattatttcttcacagtattccttttgtgatactatttttat
attttagatctcaagtgtttcattaataattaatatgagattcctcaagc
cttatgaaatagacaatttctgctttcaacttgccactggaaaataccat
taccatgtcccacgtatttgggatatgttatgttttcaatttcattcatt
taaaaatatgttttaattttaattaactcaattttgcttaggtgtgtgca
gttcagctatcaggatttgtgtactttctagtgtttctctgctgtgatat
ctgactttaacttggtcatcatatagatgcatgctgctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28040275_28040546
seq2: B6Ng01-235K09.b_51_322 (reverse)

seq1  TCTCTCACACACACACACACACACACACACACACACACACATGTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACACACACACACACACACACACACACACACACACATGTATCTGT  50

seq1  GTCATGTCCAGTCATTTTAACGATACTATTTCTCTAGTGCAATTTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTCCAGTCATTTTAACGATACTATTTCTCTAGTGCAATTTGTGAT  100

seq1  TTTGCATGTCTTAAGTATTTGCCTTGGCTAAAATTTCTGAACATGCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTCTTAAGTATTTGCCTTGGCTAAAATTTCTGAACATGCTTAA  150

seq1  CCATTAAAACTTTCACTTTATTTTTTTTTCACATTGCTTTCATATGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAACTTTCACTTTATTTTTTTTTCACATTGCTTTCATATGAGAT  200

seq1  TTGTCAAATTATACTAAGTAAAACAAAATACTTTTAGATTATTAAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATTATACTAAGTAAAACAAAATACTTTTAGATTATTAAACTGA  250

seq1  AAAATTTAAAGTACAGAGACTA  272
      ||||||||||||||||||||||
seq2  AAAATTTAAAGTACAGAGACTA  272

seq1: chr1_27892082_27893182
seq2: B6Ng01-235K09.g_65_1155

seq1  GAATTCCAGTACTTAGCAAGGGCAAGAAGAATGAAATGAGTTCAAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACTTAGCAAGGGCAAGAAGAATGAAATGAGTTCAAGTCCA  50

seq1  GTTTGGTCTATCTATCTAATTCCAGGCTAACCATGGCTACACAGCAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCTATCTATCTAATTCCAGGCTAACCATGGCTACACAGCAAAAC  100

seq1  CTTGTATCAAAAAAAAAAAAAAAAGAAAATAAAACAATAGCAACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATCAAAAAAAAAAAAAAAAGAAAATAAAACAATAGCAACAAACAA  150

seq1  AGGAAAACAGCAGATTTTTGTCATCATAAAGTTATTCTAAGTTGCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGCAGATTTTTGTCATCATAAAGTTATTCTAAGTTGCCTTGT  200

seq1  ATAATCGTGAATTTTGTAGATCTAATATATTCATTTCCACAAAGCAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCGTGAATTTTGTAGATCTAATATATTCATTTCCACAAAGCAATGT  250

seq1  AAGTTTTCTTTGACAAGTGAGAAACCACTTCATAAATTTTAAGTACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTTTGACAAGTGAGAAACCACTTCATAAATTTTAAGTACATAT  300

seq1  TCAATCCAACATCTTAAATTGCCTGACAAAATTGTCAAACACTTTCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAACATCTTAAATTGCCTGACAAAATTGTCAAACACTTTCAACC  350

seq1  ATTCCATGTGAATGATAATTATAAGTTTGTGTGTTTTAAATTATTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTGAATGATAATTATAAGTTTGTGTGTTTTAAATTATTGCACA  400

seq1  TAATCAACAAGCAAAACTATACATAAACTAAATCAGCCTTTCTATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACAAGCAAAACTATACATAAACTAAATCAGCCTTTCTATCATTT  450

seq1  TTAAATTGATATAGTTTAGAAAATATAAGCGTTAGCATAATCTTTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGATATAGTTTAGAAAATATAAGCGTTAGCATAATCTTTATAGA  500

seq1  TAGAAGTTATATATATATTTCTTTGTTTTCAATAATTATATTTATTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTATATATATATTTCTTTGTTTTCAATAATTATATTTATTCTCA  550

seq1  ATATGTCCAATAAACACCGTCAGATTTTTGTATGTTTATGGTATTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCAATAAACACCGTCAGATTTTTGTATGTTTATGGTATTTGTTG  600

seq1  TTGTTTTATGACATAAGCTCCAGAATTCTTCAAAATTTTAGACTACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATGACATAAGCTCCAGAATTCTTCAAAATTTTAGACTACAAAA  650

seq1  TATTATAAAAGCAAGTAATTACTACTAGATGTTGAAGAAACAGGTATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAAGCAAGTAATTACTACTAGATGTTGAAGAAACAGGTATAGT  700

seq1  CATCATTAGGTTATAGTTTATATGTACATAGTTCATTGAATATTTTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGGTTATAGTTTATATGTACATAGTTCATTGAATATTTTATCC  750

seq1  ATGAACTTGATTATTTCTTCACAGTATTCCTTTTGTGATACTATTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGATTATTTCTTCACAGTATTCCTTTTGTGATACTATTTTTAT  800

seq1  ATTTTAGATCTCAAGTGTTTCATTAAATAATTAATATGAGATTCCTCAAG  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTTAGATCTCAAGTGTTTCATT-AATAATTAATATGAGATTCCTCAAG  849

seq1  CCTTATGAAATAGACAATTTCTGCTTTCAACTTGCCACTGGAAAATACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGAAATAGACAATTTCTGCTTTCAACTTGCCACTGGAAAATACCA  899

seq1  TTACCATGTCCCACGTATTT-GGATATGTTATGTTTTCAATTTCATTCAT  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACCATGTCCCACGTATTTGGGATATGTTATGTTTTCAATTTCATTCAT  949

seq1  TTAAAAATATGTTTTAAATTTTAAATTAACTCAATTTTTGCTTAGGTGTG  999
      |||||||||||||||||  ||| ||||||||||| |||||||||||||||
seq2  TTAAAAATATGTTTTAA--TTTTAATTAACTCAA-TTTTGCTTAGGTGTG  996

seq1  TGCAGTTCAGCTATCAGGGATTTGTGTACTTTCTAGTGTTTCTCTTGGCT  1049
      |||||||||||||||| ||||||||||||||||||||||||||||  |||
seq2  TGCAGTTCAGCTATCA-GGATTTGTGTACTTTCTAGTGTTTCTCT--GCT  1043

seq1  GTTGATATCTGACTTTAAACTTTGGTCATCATATAGGATGCATGCTGCTC  1099
      | ||||||||||||||||   |||||||||||||| ||||||||||||||
seq2  G-TGATATCTGACTTTAA--CTTGGTCATCATATA-GATGCATGCTGCTC  1089

seq1  TT  1101
      ||
seq2  TT  1091