BAC Information

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BAC

Clone NameB6Ng01-235L11
Chromosome1 (Build37)
Map Location 67,337,357 - 67,443,593
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235L11.bB6Ng01-235L11.g
ACCGA047122GA047123
length1,1591,101
definitionB6Ng01-235L11.b B6Ng01-235L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,337,357 - 67,338,517)(67,442,486 - 67,443,593)
sequence
gaattcaatagagatgcaaatcataggaggaaaatacctaaatgaattgt
cttagtctatttttctcttgataataatgcaatgatacagggtaggtaaa
atatcctcttaagaaagttttacttttgctaatggctctgttttaagttt
gaaggttatcattcagggctggcctggttacagaggactgaggttgtaca
gatgccaaaaaacagttacaaatgtgtgtgtccagtccctcgctttgtaa
aggcatccgatgctcagtcctggggtcccccagtgatgactttaatcctc
tgcctcacaaagattctgtgtctaaatatcacagctctgctgagttttta
agctcttaacatttcaaaatggcatgaaactccaacgtgagatgtagttg
agacaaatacactcaaattgcagtagacatctttaataacgcagcaagtc
tcagcaaatgactgtgctgagactatttaatattaagctgttttgcgtat
catcttataggcatatttattagatgctaagtcacttgaaacgttcttaa
tttgtgtaattctgaacaatactgtcaagtaattattatctcccaaatta
tgggcatctagtcccctatcaaaggatcccatgattctctcctttgttcc
cttttctgtccatccctcttccttttcctctttctccactttagtttgta
cttttccaagttctttccatttctcacctttctttctctttcatttcttc
ttttctttctctctttcctttgctccccccttcctcctcattttctttat
ctcttgttcccctgcttccttacccactatctcagctcctcatccttttc
tgtgcatgtctgttacctgtggagattgtgaaaacaatgatttgctcata
tctgagccctttatttgagaggccttggtgggaactcaaaactgtgtact
tccaaaaagttccttagtgatatagttttctgctgcaccaagggactata
cttaaagagccaggttctttatctgatgtgatgttcaggttcctgcttca
aattaattcatcggacttagatagaagctagaattttgtttagaaattgc
tgtattgtcctgccataatttgattcatcaatcccacatgatggaaattg
gccttacaa

gaattcctaaccactgtgagcatgatcattgggtctgtgacatgtaaaga
catgttttgtgaaagatactttctctcttgagatctccagcatttttaag
atttcagcaaaagtctgtgaatactaggattaatgtaaaatgtttatgaa
cattgacaatgtataaaaataaacagagtcctttatgtagccctgaatta
tcaacagataaacagtttcgcacacttcgttggtatgttttgatatgaga
agcagagaggttagagcttgttctaggtaagagaagaagcagaacagaaa
aaaagaagcacaccaaaagaagctgctaagttaactcagtacttgaaggc
acacaaagaccatatgtgtgaagaaaattctgtattcttcaacaaaacat
aatagtaacacaatattattctgacttaattttaaacacatatccacata
tcaaatctccagcagatttcccagagtactttcacattctatttttttct
gccagcaaatccatattattatacaaatgttttgagattataagaaaaaa
atcctttcatttttgccagggatgaatatgaatgccaaacataaattcaa
atttgcacatctaaaactaaaaatgttccaaggctctcacaggcttcact
tgtagactttattgtatctgactcctctacttcatccatagtttgacatc
atgatttcctgtctcaatactgataattatgtcccactcccctgatgtgt
ctatagtcagcacaggcctcatatacccatcttattttcatttgccacaa
tatctcttgatttcaattactgccaatttcttatcgaaataaattattat
atagtattcctttaaatttttctttagtttggagaattttcaaatgtgtg
tgtgtgtgtgtgtttatatctatccccccatttgcacctctaaccctcca
atccctccaaaatgtcccctcccacttcctgtcatcattgttttgttgtt
catttgtattgtttttttgacactcactaggtccacgtagtgttatccat
attgaccacaatagtattagggaaaaccccacactgcatgttcataagaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67337357_67338517
seq2: B6Ng01-235L11.b_45_1203

seq1  GAATTCAATAGAGATGCAAATCATAGGAGGAAAATACCTAAATGAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAGATGCAAATCATAGGAGGAAAATACCTAAATGAATTGT  50

seq1  CTTAGTCTATTTTTCTCTTGATAATAATGCAATGATACAGGGTAGGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTATTTTTCTCTTGATAATAATGCAATGATACAGGGTAGGTAAA  100

seq1  ATATCCTCTTAAGAAAGTTTTACTTTTGCTAATGGCTCTGTTTTAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCTTAAGAAAGTTTTACTTTTGCTAATGGCTCTGTTTTAAGTTT  150

seq1  GAAGGTTATCATTCAGGGCTGGCCTGGTTACAGAGGACTGAGGTTGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTATCATTCAGGGCTGGCCTGGTTACAGAGGACTGAGGTTGTACA  200

seq1  GATGCCAAAAAACAGTTACAAATGTGTGTGTCCAGTCCCTCGCTTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAAAAAACAGTTACAAATGTGTGTGTCCAGTCCCTCGCTTTGTAA  250

seq1  AGGCATCCGATGCTCAGTCCTGGGGTCCCCCAGTGATGACTTTAATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCGATGCTCAGTCCTGGGGTCCCCCAGTGATGACTTTAATCCTC  300

seq1  TGCCTCACAAAGATTCTGTGTCTAAATATCACAGCTCTGCTGAGTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACAAAGATTCTGTGTCTAAATATCACAGCTCTGCTGAGTTTTTA  350

seq1  AGCTCTTAACATTTCAAAATGGCATGAAACTCCAACGTGAGATGTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAACATTTCAAAATGGCATGAAACTCCAACGTGAGATGTAGTTG  400

seq1  AGACAAATACACTCAAATTGCAGTAGACATCTTTAATAACGCAGCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATACACTCAAATTGCAGTAGACATCTTTAATAACGCAGCAAGTC  450

seq1  TCAGCAAATGACTGTGCTGAGACTATTTAATATTAAGCTGTTTTGCGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATGACTGTGCTGAGACTATTTAATATTAAGCTGTTTTGCGTAT  500

seq1  CATCTTATAGGCATATTTATTAGATGCTAAGTCACTTGAAACGTTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATAGGCATATTTATTAGATGCTAAGTCACTTGAAACGTTCTTAA  550

seq1  TTTGTGTAATTCTGAACAATACTGTCAAGTAATTATTATCTCCCAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAATTCTGAACAATACTGTCAAGTAATTATTATCTCCCAAATTA  600

seq1  TGGGCATCTAGTCCCCTATCAAAGGATCCCATGATTCTCTCCTTTGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTAGTCCCCTATCAAAGGATCCCATGATTCTCTCCTTTGTTCC  650

seq1  CTTTTCTGTCCATCCCTCTTCCTTTTCCTCTTTCTCCACTTTAGTTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTCCATCCCTCTTCCTTTTCCTCTTTCTCCACTTTAGTTTGTA  700

seq1  CTTTTCCAAGTTCTTTCCATTTCTCACCTTTCTTTCTCTTTCATTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAGTTCTTTCCATTTCTCACCTTTCTTTCTCTTTCATTTCTTC  750

seq1  TTTTCTTTCTCTCTTTCCTTTGCTCCCCCCTTCCTCCTCATTTTCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTCTCTTTCCTTTGCTCCCCCCTTCCTCCTCATTTTCTTTAT  800

seq1  CTCTTGTTCCCCTGCTTCCTTACCCACTATCTCAGGCTCCTCATCCTTTT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTTGTTCCCCTGCTTCCTTACCCACTATCTCA-GCTCCTCATCCTTTT  849

seq1  CTGTGCATGTCTGTTACCTGTGGAGATTGTGAAAACAATGATTTGCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGTCTGTTACCTGTGGAGATTGTGAAAACAATGATTTGCTCAT  899

seq1  ATCTGAGCCCTTTATTTGAGAGGCCTTGGTTGGAACTCAAAACTGTGTAC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTGAGCCCTTTATTTGAGAGGCCTTGGTGGGAACTCAAAACTGTGTAC  949

seq1  TTCCAAAAAGTTCTTTAGTGATAATAG-TTTCTGCTGCACCAA-GGACTA  998
      ||||||||||||| |||||||| |||| ||||||||||||||| ||||||
seq2  TTCCAAAAAGTTCCTTAGTGAT-ATAGTTTTCTGCTGCACCAAGGGACTA  998

seq1  TACTTAAAGAGCCA-GTTCTTTATCTGATGTGATGTTCAGGTTCCTGCTT  1047
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTTAAAGAGCCAGGTTCTTTATCTGATGTGATGTTCAGGTTCCTGCTT  1048

seq1  CCAAAATTAAATCAATAAGACTTTAGATAGAGCTTAGAA-TTTGTTTAGA  1096
      |  ||||||| || ||  ||| |||||||||   ||||| ||||||||| 
seq2  C--AAATTAATTC-ATCGGAC-TTAGATAGAAGCTAGAATTTTGTTTAG-  1093

seq1  AAATTGCCTGTATTGTCCTG-CATAATTTTGATCATC-ATTCCACATGAT  1144
      |||||| ||||||||||||| ||||||||   ||||| || |||||||||
seq2  AAATTG-CTGTATTGTCCTGCCATAATTTGATTCATCAATCCCACATGAT  1142

seq1  GGAAATTGGCTTTACAA  1161
      |||||||||| ||||||
seq2  GGAAATTGGCCTTACAA  1159


seq1: chr1_67442486_67443593
seq2: B6Ng01-235L11.g_64_1164 (reverse)

seq1  ATTCTTTATTGAACATTGGCCAGTGTTGGGTTTT-CCTATACCTATTTGT  49
      ||||||   |||||||    |||||| ||||||| ||||   ||| ||||
seq2  ATTCTT--ATGAACAT---GCAGTGTGGGGTTTTCCCTAATACTA-TTGT  44

seq1  GGTC-ATATGGATAACACTACGTGGACTTAGTGAGTTGTCAAAAAA--CA  96
      |||| |||||||||||||||||||||| ||||||| ||||||||||   |
seq2  GGTCAATATGGATAACACTACGTGGACCTAGTGAG-TGTCAAAAAAACAA  93

seq1  TACAAATGAACAAACAAAAACAATGATGACAGGAAGTTGGGAGGGGACAT  146
      |||||||||||||   |||||||||||||||||||| |||||||||||||
seq2  TACAAATGAACAA--CAAAACAATGATGACAGGAAG-TGGGAGGGGACAT  140

seq1  TTTGGAGGGATTTGGAGGGTTAGAGGTGCAAATTGGGGGGATAGATATAA  196
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TTTGGAGGGA-TTGGAGGGTTAGAGGTGCAAA-TGGGGGGATAGATATAA  188

seq1  ACACACACACACACACACATTTG-AAATTCTCCAAACTAAAGAAAAATTT  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACACACACACACACACATTTGAAAATTCTCCAAACTAAAGAAAAATTT  238

seq1  AAAGGAATACTATATAATAATTTATTTCGATAAGAAATTGGCAGTAATTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATACTATATAATAATTTATTTCGATAAGAAATTGGCAGTAATTG  288

seq1  AAATCAAGAGATATTGTGGCAAATGAAAATAAGATGGGTATATGAGGCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAGATATTGTGGCAAATGAAAATAAGATGGGTATATGAGGCCT  338

seq1  GTGCTGACTATAGACACATCAGGGGAGTGGGACATAATTATCAGTATTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACTATAGACACATCAGGGGAGTGGGACATAATTATCAGTATTGA  388

seq1  GACAGGAAATCATGATGTCAAACTATGGATGAAGTAGAGGAGTCAGATAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAATCATGATGTCAAACTATGGATGAAGTAGAGGAGTCAGATAC  438

seq1  AATAAAGTCTACAAGTGAAGCCTGTGAGAGCCTTGGAACATTTTTAGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTCTACAAGTGAAGCCTGTGAGAGCCTTGGAACATTTTTAGTTT  488

seq1  TAGATGTGCAAATTTGAATTTATGTTTGGCATTCATATTCATCCCTGGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGCAAATTTGAATTTATGTTTGGCATTCATATTCATCCCTGGCA  538

seq1  AAAATGAAAGGATTTTTTTCTTATAATCTCAAAACATTTGTATAATAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGGATTTTTTTCTTATAATCTCAAAACATTTGTATAATAATA  588

seq1  TGGATTTGCTGGCAGAAAAAAATAGAATGTGAAAGTACTCTGGGAAATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGCTGGCAGAAAAAAATAGAATGTGAAAGTACTCTGGGAAATCT  638

seq1  GCTGGAGATTTGATATGTGGATATGTGTTTAAAATTAAGTCAGAATAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGATTTGATATGTGGATATGTGTTTAAAATTAAGTCAGAATAATA  688

seq1  TTGTGTTACTATTATGTTTTGTTGAAGAATACAGAATTTTCTTCACACAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTACTATTATGTTTTGTTGAAGAATACAGAATTTTCTTCACACAT  738

seq1  ATGGTCTTTGTGTGCCTTCAAGTACTGAGTTAACTTAGCAGCTTCTTTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTTGTGTGCCTTCAAGTACTGAGTTAACTTAGCAGCTTCTTTTG  788

seq1  GTGTGCTTCTTTTTTTCTGTTCTGCTTCTTCTCTTACCTAGAACAAGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTCTTTTTTTCTGTTCTGCTTCTTCTCTTACCTAGAACAAGCTC  838

seq1  TAACCTCTCTGCTTCTCATATCAAAACATACCAACGAAGTGTGCGAAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTCTGCTTCTCATATCAAAACATACCAACGAAGTGTGCGAAACT  888

seq1  GTTTATCTGTTGATAATTCAGGGCTACATAAAGGACTCTGTTTATTTTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGTTGATAATTCAGGGCTACATAAAGGACTCTGTTTATTTTTA  938

seq1  TACATTGTCAATGTTCATAAACATTTTACATTAATCCTAGTATTCACAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTCAATGTTCATAAACATTTTACATTAATCCTAGTATTCACAGA  988

seq1  CTTTTGCTGAAATCTTAAAAATGCTGGAGATCTCAAGAGAGAAAGTATCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGAAATCTTAAAAATGCTGGAGATCTCAAGAGAGAAAGTATCT  1038

seq1  TTCACAAAACATGTCTTTACATGTCACAGACCCAATGATCATGCTCACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAACATGTCTTTACATGTCACAGACCCAATGATCATGCTCACAG  1088

seq1  TGGTTAGGAATTC  1108
      |||||||||||||
seq2  TGGTTAGGAATTC  1101


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