BAC Information

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BAC

Clone NameB6Ng01-235L17
Chromosome1 (Build37)
Map Location 154,796,594 - 154,907,777
singlet/doubletdoublet
Overlap geneEG668097, Nmnat2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235L17.bB6Ng01-235L17.g
ACCGA047134GA047135
length9251,153
definitionB6Ng01-235L17.b B6Ng01-235L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,906,858 - 154,907,777)(154,796,594 - 154,797,728)
sequence
gaattcactctgaagaccaggctggtctcaaacttacagagatccacctg
cttctgcctccccagggctgggattaaggcgcgtgccaccactgcccagt
ttgagggttgtgatgttaatagaaaaaactcagcaggtgctgaggtactg
gagctcagtcgtatatagtgcttacctggtatcacaaggctctgcccgag
agcagtcccagcactgcatgcccaaaccaacccaagccctgtaacagtgc
gccagccctcagaggattatctttatcttatctttagtttctggagcagt
aacatctcaggggaggatggcaaagtgcgacaaggaaaactaaaacaaac
taacaaacaaaaccaccaccaacaaagaaccaacttcctttaaaacctat
tatagcagagcatggtggtttaacccaaggggcagaccagacagagctct
gcgagtttgaggccagcctgaaccacttagtaagactgtctcaataaata
aacaaacaagccaacaagaggaactgatacactctgtgcagctcgtaact
ggaaaagaatcacatcctgcaagtcccctttgggccagcaaagcttgctg
gtggccccaaagagacacttgtcccagtgttctttgtcccttttgtcaac
cgccctccatactactgaaagagttgtttcccaggaggggtggggggaga
gagactgggaagccacctgcagtggcagaggccagggccttcaccagacc
tgctcttggctgctctttaattgaaatgaaacacagggttctgagtcaca
gcgcagcaaacatccctgggggatggtgccaggttggacttgagtagaca
tacgggcctgaaagcctcaacttgcagctcagcttccaacttgtgtcttg
gattaatggatggggatagggagcg
gaattcctgataaggagtcttggtaaacacagtctctttccagaggtcgg
gggtcaggcagctgtaggtcttggagatggcatcaaaggtggccttggca
aagttgctcagggtggcagtgcagcctccggctgaagcgtagcagacgtc
tatactggccatcatcaggagcttcttgggcacaggagcagagacaatgc
cagtgcctctgggggcagggatgagacgcaccagcacagagccacagcgg
ccttgcatggaacaatgtggggcttgcccagtagcctctccgcacaggtc
acgatgatggccactcggatggcagtggcaacttctttggagcacttaac
accaagataaacgtgaccattgtagtccccaaaagcgacaaaagccttga
accttgtccgctggccagcccgagtctgctagtgcactggcatggttttc
agaaccacatcctttagagatgcacccaggaaaaagtcaatgatctcgag
tccttaatgggccgggagaacaggtagatctcctccaaggacttgatctt
catgtccttaaccaggcggcccagcttggttacagggatccactccttgt
cttcagctttacctccacaaactccgtggcctcgtaaaggtggtaagacg
gcagttgctacggattcctccaaggagccaccctggcctcctaatcctgg
gccctgggatcctccgggccctcccgctgcaccagcattatccaccattt
agtgttttcccaaagaagaagcgtgcgaaatttatttttaatgtgtgtat
ctggcaggatctatggcaatcctactacatgttatagtagttatttacaa
caacctagaaataggtaccatttccactttgagaaaataaagggtttagc
gatgaaaggatttgcccaaagcttgtataattagcaagtggctgagccca
gccagccagccaccatccctacccttctatgtttttcctttttccttgtt
ttcttaggcagagtttcatccattcccgagctgggcctaggctctgcacc
agcgtgttataccaacacttcaagttacattcatgcttgggagtaagcca
acaatcatgcacccagccatgggattccttacaactgagtactccttagc
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154906858_154907777
seq2: B6Ng01-235L17.b_47_971 (reverse)

seq1  CGCTCCCTCT-CCCATCCA-TCATCCAA-ACAC-AGTTGGTAGCTGAGCT  46
      |||||||| | |||||||| | |||||| |||| |||||| |||||||||
seq2  CGCTCCCTATCCCCATCCATTAATCCAAGACACAAGTTGGAAGCTGAGCT  50

seq1  GCAAGCTGAGGCTCTCAGGCCCGTATGTCTACTCAAGTCCAACCTGGCAC  96
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGAGGCTTTCAGGCCCGTATGTCTACTCAAGTCCAACCTGGCAC  100

seq1  CAT-CCCCAGGGATGTTTGCTGCGCTGTGACTCAGAACCCTGTGTTTCAT  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCAGGGATGTTTGCTGCGCTGTGACTCAGAACCCTGTGTTTCAT  150

seq1  TTCAATTAAAGAGCAGCCAAGAGCAGGTCTGGTGAAGGCCCTGGCCTCTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAAGAGCAGCCAAGAGCAGGTCTGGTGAAGGCCCTGGCCTCTG  200

seq1  CCACTGCAGGTGGCTTCCCAGTCTCTCTCCCCCCACCCCTCCTGGGAAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGGTGGCTTCCCAGTCTCTCTCCCCCCACCCCTCCTGGGAAAC  250

seq1  AACTCTTTCAGTAGTATGGAGGGCGGTTGACAAAAGGGACAAAGAACACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCAGTAGTATGGAGGGCGGTTGACAAAAGGGACAAAGAACACT  300

seq1  GGGACAAGTGTCTCTTTGGGGCCACCAGCAAGCTTTGCTGGCCCAAAGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGTGTCTCTTTGGGGCCACCAGCAAGCTTTGCTGGCCCAAAGGG  350

seq1  GACTTGCAGGATGTGATTCTTTTCCAGTTACGAGCTGCACAGAGTGTATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAGGATGTGATTCTTTTCCAGTTACGAGCTGCACAGAGTGTATC  400

seq1  AGTTCCTCTTGTTGGCTTGTTTGTTTATTTATTGAGACAGTCTTACTAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCTTGTTGGCTTGTTTGTTTATTTATTGAGACAGTCTTACTAAG  450

seq1  TGGTTCAGGCTGGCCTCAAACTCGCAGAGCTCTGTCTGGTCTGCCCCTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGGCTGGCCTCAAACTCGCAGAGCTCTGTCTGGTCTGCCCCTTG  500

seq1  GGTTAAACCACCATGCTCTGCTATAATAGGTTTTAAAGGAAGTTGGTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAACCACCATGCTCTGCTATAATAGGTTTTAAAGGAAGTTGGTTCT  550

seq1  TTGTTGGTGGTGGTTTTGTTTGTTAGTTTGTTTTAGTTTTCCTTGTCGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTGGTGGTTTTGTTTGTTAGTTTGTTTTAGTTTTCCTTGTCGCA  600

seq1  CTTTGCCATCCTCCCCTGAGATGTTACTGCTCCAGAAACTAAAGATAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCATCCTCCCCTGAGATGTTACTGCTCCAGAAACTAAAGATAAGA  650

seq1  TAAAGATAATCCTCTGAGGGCTGGCGCACTGTTACAGGGCTTGGGTTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAATCCTCTGAGGGCTGGCGCACTGTTACAGGGCTTGGGTTGGT  700

seq1  TTGGGCATGCAGTGCTGGGACTGCTCTCGGGCAGAGCCTTGTGATACCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATGCAGTGCTGGGACTGCTCTCGGGCAGAGCCTTGTGATACCAG  750

seq1  GTAAGCACTATATACGACTGAGCTCCAGTACCTCAGCACCTGCTGAGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACTATATACGACTGAGCTCCAGTACCTCAGCACCTGCTGAGTTT  800

seq1  TTTCTATTAACATCACAACCCTCAAACTGGGCAGTGGTGGCACGCGCCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAACATCACAACCCTCAAACTGGGCAGTGGTGGCACGCGCCTT  850

seq1  AATCCCAGCCCTGGGGAGGCAGAAGCAGGTGGATCTCTGTAAGTTTGAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCCCTGGGGAGGCAGAAGCAGGTGGATCTCTGTAAGTTTGAGA  900

seq1  CCAGCCTGGTCTTCAGAGTGAATTC  920
      |||||||||||||||||||||||||
seq2  CCAGCCTGGTCTTCAGAGTGAATTC  925

seq1: chr1_154796594_154797728
seq2: B6Ng01-235L17.g_67_1219

seq1  GAATTCCTGATAAGGAGTCTTGGTAAACACAGTCTCTTTCCAGAGGTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAAGGAGTCTTGGTAAACACAGTCTCTTTCCAGAGGTCGG  50

seq1  GGGTCAGGCAGCTGTAGGTCTTGGAGATGGCATCAAAGGTGGCCTTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGCAGCTGTAGGTCTTGGAGATGGCATCAAAGGTGGCCTTGGCA  100

seq1  AAGTTGCTCAGGGTGGCAGTGCAGCCTCCGGCTGAAGCGTAGCAGACGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTCAGGGTGGCAGTGCAGCCTCCGGCTGAAGCGTAGCAGACGTC  150

seq1  TATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGC  200

seq1  CAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGG  250

seq1  CCTTGCATGGAACAATGTGGGGCTTGCCCAGTAGCCTCTCCGCACAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATGGAACAATGTGGGGCTTGCCCAGTAGCCTCTCCGCACAGGTC  300

seq1  ACGATGATGGCCACTCGGATGGCAGTGGCAACTTCTTTGGAGCACTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGATGGCCACTCGGATGGCAGTGGCAACTTCTTTGGAGCACTTAAC  350

seq1  ACCAAGATAAACGTGACCATTGTAGTCCCCAAAAGCGACAAAAGCCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATAAACGTGACCATTGTAGTCCCCAAAAGCGACAAAAGCCTTGA  400

seq1  ACCTTGTCCGCTGGCCAGCCCGAGTCTGCTAGTGCACTGGCATGGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCCGCTGGCCAGCCCGAGTCTGCTAGTGCACTGGCATGGTTTTC  450

seq1  AGAACCACATCCTTTAGAGATGCACCCAGGAAAAAGTCAATGATCTCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACATCCTTTAGAGATGCACCCAGGAAAAAGTCAATGATCTCGAG  500

seq1  TCCTTAATGGGCCGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATGGGCCGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTT  550

seq1  CATGTCCTTAACCAGGCGGCCCAGCTTGGTTACAGGGATCCACTCCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTAACCAGGCGGCCCAGCTTGGTTACAGGGATCCACTCCTTGT  600

seq1  CTTCAGCTTTACCTCCACAAACTCCGTGGCCTCGTAAAGGTGGTAAGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTTACCTCCACAAACTCCGTGGCCTCGTAAAGGTGGTAAGACG  650

seq1  GCAGTTGCTACGGATTCCTCCAAGGAGCCACCCTGGCCTCCTAATCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCTACGGATTCCTCCAAGGAGCCACCCTGGCCTCCTAATCCTGG  700

seq1  GCCCTGGGATCCTCCGGGCCCTCCCGCTGCACCAGCATTATCCACCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGATCCTCCGGGCCCTCCCGCTGCACCAGCATTATCCACCATTT  750

seq1  AGTGTTTTCCCAAAGAAGAAGCGTGCGAAA-TTATTTTTAATGTGTGTAT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGTTTTCCCAAAGAAGAAGCGTGCGAAATTTATTTTTAATGTGTGTAT  800

seq1  CTGGCAGGATCTA-GGCAATCCTACTACATGTTATAGTAGTTA-TTACAA  847
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CTGGCAGGATCTATGGCAATCCTACTACATGTTATAGTAGTTATTTACAA  850

seq1  CAACCTAGAAATAGGTACCA-TTCCAC-TTGAGAAAATAAAGGG-TTAGC  894
      |||||||||||||||||||| |||||| |||||||||||||||| |||||
seq2  CAACCTAGAAATAGGTACCATTTCCACTTTGAGAAAATAAAGGGTTTAGC  900

seq1  GATG-AAGGATTTGCCCAAAGC-TGTATAATTAGCAAGTGGCTGAG-CCA  941
      |||| ||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GATGAAAGGATTTGCCCAAAGCTTGTATAATTAGCAAGTGGCTGAGCCCA  950

seq1  GCCAGCCAGCCA-CAT-CCTACCC-TCTATGTTTT--CCTTTTCCTTGTT  986
      |||||||||||| ||| ||||||| ||||||||||  | |||||||||||
seq2  GCCAGCCAGCCACCATCCCTACCCTTCTATGTTTTTCCTTTTTCCTTGTT  1000

seq1  TTC-TAGGCAGAGTTTCATCCA-TCCCGAGCT-GGCCTAAGCTCTGCACC  1033
      ||| |||||||||||||||||| ||||||||| |||||| |||||||| |
seq2  TTCTTAGGCAGAGTTTCATCCATTCCCGAGCTGGGCCTAGGCTCTGCA-C  1049

seq1  CAGCGTG-TATACC-ACAC-TCAGTTTACA-TCATGCTTGGGAGTAAAGC  1079
      ||||||| |||||| |||| |||  ||||| |||||||||||||| ||||
seq2  CAGCGTGTTATACCAACACTTCAAGTTACATTCATGCTTGGGAGT-AAGC  1098

seq1  CAACATCCATGCACCCAG-CATGGGAATCCTACCAACTGAGTTACATCCT  1128
      |||||  ||||||||||| ||||||| ||||  |||||||| ||| ||||
seq2  CAACAATCATGCACCCAGCCATGGGATTCCTTACAACTGAG-TAC-TCCT  1146

seq1  TAGCCCC  1135
      |||||||
seq2  TAGCCCC  1153