BAC Information

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BAC

Clone NameB6Ng01-235M24
Chromosome1 (Build37)
Map Location 167,358,294 - 167,497,795
singlet/doubletdoublet
Overlap geneIqwd1, Brp44, Sacy, Ppia-ps1-1625
Upstream geneNme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161
Downstream geneMpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M24.bB6Ng01-235M24.g
ACCGA047193GA047194
length774903
definitionB6Ng01-235M24.b B6Ng01-235M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,358,294 - 167,359,064)(167,497,231 - 167,497,795)
sequence
gaattctctcttctatcttctctctctctctcttctcttttctctctccc
tctctctctctctctctctctctctctctctctctctcacacacacacac
acagaatctaaatgtaattttagaaactgttttgtttttgagacaaggtt
tagaaaattattttaaagaagaagaccagtaagccaagaagacacaaaca
aagcaggtcaatgaggcagagggaaaacaaaaacatagtattagcagaaa
agcatttcaatggtgaggagaaattctaatgagttaaatttctaagaagc
aagcttggactctatagagatatgagaatcataaataccttcatacaagc
aacttcagtagagttattaaaatggaagccttatgagaaaatgcacgtgg
ccttcagacaccacaaaaccaaaccttgcacacacttttctaaattaaaa
aatgtgctggagcacagatgtgtgtatgtgaatatgttcaaaacatactg
tataaaattctcaaagggaaaaaatttcaaatatacttgtgttttgttat
gtgtttgtgtgtgtctcaggctggccttgaacactacatagctgaagatg
accttgaattcctgatcctctggtctttttctcacatgtactgggattac
aaatacccatctagcacacttttaatgctttaattgaaaacctttattcc
caccactcactaaccccccttgtttctttttcttaacctttctctctctc
tctctctctctctctctctctcac
gaattcccaagcattcttcaaatgttctgtaaatgaagcctagaaaggag
ggaaacagagcgatgttgcagcaacgtggtgtggggttggggtgggtctt
tcaggcctttagctcccaacagagtttcccactgtatagtaatatctggt
tgctttagtgctttagatactcaaagggtcccgtgggttgcaacaatcac
attgctgcattggcctgtgtttccaggatcttagctataccttgacttct
tatggatacgtggcccaatttcatagaagagaccaaatgccatcagattt
aatccaacctttctcaactcaactacaagccctggtagtccaggaatccc
cagtttttcacccatagctcctgtatgggtaacaatgtatgtctctcctt
tgttaatcatgagtggagaaagaacccctggttggtccctctgatttaat
aaggcagtacttaaaggctgtcaggaaagagcttgttttccctgtcactg
caagtgaggattcttaaaaataagccatctaggggctggagagatggctc
agtggataagagcactgactgctcttccaaaggtcctgagttcaaattcc
agaaaccacatggtgactcacaaccacctttaatgagatctgacgccctc
ttctggtgtctgaaggcagctacagtgtacttacatacaaataataaatt
aaaaaaaaataagccattgtctgcagaggctgattggctgattagaactt
cagtgatgcggggaagctcggatgttgcaggtccagagttttgaatgtaa
ttgatcttttagctccctaaatagtcagccattccttgttcaacttctgt
gttaaggctcaacgctctgtgactgacaccttaaaaactgtttaggatgt
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167358294_167359064
seq2: B6Ng01-235M24.b_44_817

seq1  GAATTCTCTCTTCTATCTTCTCTCTCTCTCTCTTCTCTTTTCTCTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTCTATCTTCTCTCTCTCTCTCTTCTCTTTTCTCTCTCCC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAC  100

seq1  ACAGAATCTAAATGTAATTTTAGAAACTGTTTTGTTTTTGAGACAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCTAAATGTAATTTTAGAAACTGTTTTGTTTTTGAGACAAGGTT  150

seq1  TAGAAAATTATTTTAAAGAAGAAGACCAGTAAGCCAAGAAGACACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTATTTTAAAGAAGAAGACCAGTAAGCCAAGAAGACACAAACA  200

seq1  AAGCAGGTCAATGAGGCAGAGGGAAAACAAAAACATAGTATTAGCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTCAATGAGGCAGAGGGAAAACAAAAACATAGTATTAGCAGAAA  250

seq1  AGCATTTCAATGGTGAGGAGAAATTCTAATGAGTTAAATTTCTAAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCAATGGTGAGGAGAAATTCTAATGAGTTAAATTTCTAAGAAGC  300

seq1  AAGCTTGGACTCTATAGAGATATGAGAATCATAAATACCTTCATACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGACTCTATAGAGATATGAGAATCATAAATACCTTCATACAAGC  350

seq1  AACTTCAGTAGAGTTATTAAAATGGAAGCCTTATGAGAAAATGCACGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGTAGAGTTATTAAAATGGAAGCCTTATGAGAAAATGCACGTGG  400

seq1  CCTTCAGACACCACAAAACCAAACCTTGCACACACTTTTCTAAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGACACCACAAAACCAAACCTTGCACACACTTTTCTAAATTAAAA  450

seq1  AATGTGCTGGAGCACAGATGTGTGTATGTGAATATGTTCAAAACATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGGAGCACAGATGTGTGTATGTGAATATGTTCAAAACATACTG  500

seq1  TATAAAATTCTCAAAGGGAAAAAATTTCAAATATACTTGTGTTTTGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTCTCAAAGGGAAAAAATTTCAAATATACTTGTGTTTTGTTAT  550

seq1  GTGTTTGTGTGTGTCTCAGGCTGGCCTTGAACACTACATAGCTGAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTCTCAGGCTGGCCTTGAACACTACATAGCTGAAGATG  600

seq1  ACCTTGAATTCCTGATCCTCTGGTCTTTTTCTCACATGTACTGGGATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAATTCCTGATCCTCTGGTCTTTTTCTCACATGTACTGGGATTAC  650

seq1  AAATACCCATCTAGCACAC-TTTAATGCTTTAATTGAAAACCTTTATTCC  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATACCCATCTAGCACACTTTTAATGCTTTAATTGAAAACCTTTATTCC  700

seq1  CACCACTCACTAA-CCCCCTTGTTTC-TTTTCTTAACCTTTCTCTCTCTC  747
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CACCACTCACTAACCCCCCTTGTTTCTTTTTCTTAACCTTTCTCTCTCTC  750

seq1  TCTCTCTCTCTCTCTCTCTCTCTC  771
      |||||||||||||||||||||| |
seq2  TCTCTCTCTCTCTCTCTCTCTCAC  774

seq1: chr1_167497231_167497795
seq2: B6Ng01-235M24.g_66_631 (reverse)

seq1  AGTGCTCTTATCCACTGAGCCATCTCTCCAGCCCCTAGATGGCTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTATCCACTGAGCCATCTCTCCAGCCCCTAGATGGCTTATTTT  50

seq1  TAAGAATCCTCACTTGCAGTGACAGGGAAAACAAGCTCTTTCCTGACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCCTCACTTGCAGTGACAGGGAAAACAAGCTCTTTCCTGACAGC  100

seq1  CTTTAAGTACTGCCTTATTAAATCAGAGGGACCAACCAGGGGTTCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTACTGCCTTATTAAATCAGAGGGACCAACCAGGGGTTCTTTCT  150

seq1  CCACTCATGATTAACAAAGGAGAGACATACATTGTTACCCATACAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATGATTAACAAAGGAGAGACATACATTGTTACCCATACAGGAGC  200

seq1  TATGGGTGAAAAACTGGGGATTCCTGGACTACCAGGGCTTGTAGTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGAAAAACTGGGGATTCCTGGACTACCAGGGCTTGTAGTTGAGT  250

seq1  TGAGAAAGGTTGGATTAAATCTGATGGCATTTGGTCTCTTCTATGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGTTGGATTAAATCTGATGGCATTTGGTCTCTTCTATGAAATT  300

seq1  GGGCCACGTATCCATAAGAAGTCAAGGTATAGCTAAGATCCTGGAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACGTATCCATAAGAAGTCAAGGTATAGCTAAGATCCTGGAAACAC  350

seq1  AGGCCAATGCAGCAATGTGATTGTTGCAACCCACGGGACCCTTTGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATGCAGCAATGTGATTGTTGCAACCCACGGGACCCTTTGAGTAT  400

seq1  CTAAAGCACTAAAGCAACCAGATATTACTATACAGTGGGAAACTCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCACTAAAGCAACCAGATATTACTATACAGTGGGAAACTCTGTTG  450

seq1  GGAGCTAAAGGCCTGAAAGACCCACCCCAACCCCACACCACGTTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGGCCTGAAAGACCCACCCCAACCCCACACCACGTTGCTGCA  500

seq1  ACATCGCTCTGTTTCCCTCCTTTCTAGGCTTCATTTACAGAACATTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCTCTGTTTCCCTCCTTTCTAGGCTTCATTTACAGAACATTTGAA  550

seq1  GAATGCTT-GGAATTC  565
      |||||||| |||||||
seq2  GAATGCTTGGGAATTC  566