BAC Information

Click to search

BAC

Clone NameB6Ng01-235N23
Chromosome1 (Build37)
Map Location 175,246,627 - 175,364,199
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235N23.bB6Ng01-235N23.g
ACCGA047239GA047240
length1,152216
definitionB6Ng01-235N23.b B6Ng01-235N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,246,627 - 175,247,777)(175,363,984 - 175,364,199)
sequence
gaattctttgtccaccatatgatgacaggaaaaaaatcaacaaactcttt
ctgttactttattatggaatctgaaatttccgagtcttggtgtgaccaag
attgttgcttaggtgagtcaaaacagatgctctataatacaaaagatcaa
atcccagagatttaacaaaacacatacacacacgcacacacacactacca
ccaccaccaccagcaacaacaacaacaacacaaccaggctatcagtttga
gagagacaaggaaaacatggaaagagttggggagagaaaagggaaaggga
aaatgatgtaactgtgttttaatttaaaacatatattaagtaaggaagaa
taaagtggacttcttcataagcaatctgaggcatttgggtaaggaatgtc
ctgtcctgagccacactccgtgaaattggtaccctgaatcactaagaatg
cctttgcatagtatggaagccctgactaaaataaacagacaacataaaaa
tgaaaaaaaaaagaatagttgatataatttcaagatagaaaccaggattc
tggctgtgactccaagttgctaagagataagaattgtcattgattcaact
gtggattggctgactaaagaagacattgctggaagcatctgcagtattcc
agaaggccctgatggaatggcctctccagccttcatcacttcaagcaacc
aactctcctgtcagccaacccaggtcttctcagtgtcggcctcttgcttg
gcttggtacatggctgccttggggactcaggcacgaccatgaaagccctt
ccctcaactgtcttcttccagtcccctcaccttttctttcggacctttcc
atgtcaaagactgatcccttcttacgtattcttgtctggggggcatccac
agattgcagacaggcaattgattttggttcagctttgaacccaaggctaa
tcaaaggtgaggctttattttgaatggcaaaaatatttctctaataggtg
acaaattatcacgtgcttctactggagccttaagggtgaagtctacactg
gtggctaactggaggcacttgggcttcctgtactgatatgcctcaccaca
ctatgttgctatgactggttcaccctctggtggaacatttagagcttcta
tt
cctaaggaggcaaagccattggaggaaaagaagcatctaaacctcagttt
aatacttgaggcagggtagctataaatgataactgcggtgctatgcttat
ggcgttgatgacagaaggaaccaagctgagaagaaacgatgatagagaag
aggctctgggtgtcattcacactatgtatatatatatgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175246627_175247777
seq2: B6Ng01-235N23.b_45_1196

seq1  GAATTCTTTGTCCACCATATGATGACAGGAAAAAAATCAACAAACTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCACCATATGATGACAGGAAAAAAATCAACAAACTCTTT  50

seq1  CTGTTACTTTATTATGGAATCTGAAATTTCCGAGTCTTGGTGTGACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTTTATTATGGAATCTGAAATTTCCGAGTCTTGGTGTGACCAAG  100

seq1  ATTGTTGCTTAGGTGAGTCAAAACAGATGCTCTATAATACAAAAGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTTAGGTGAGTCAAAACAGATGCTCTATAATACAAAAGATCAA  150

seq1  ATCCCAGAGATTTAACAAAACACATACACACACGCACACACACACTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGATTTAACAAAACACATACACACACGCACACACACACTACCA  200

seq1  CCACCACCACCAGCAACAACAACAACAACACAACCAGGCTATCAGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCAGCAACAACAACAACAACACAACCAGGCTATCAGTTTGA  250

seq1  GAGAGACAAGGAAAACATGGAAAGAGTTGGGGAGAGAAAAGGGAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAAGGAAAACATGGAAAGAGTTGGGGAGAGAAAAGGGAAAGGGA  300

seq1  AAATGATGTAACTGTGTTTTAATTTAAAACATATATTAAGTAAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTAACTGTGTTTTAATTTAAAACATATATTAAGTAAGGAAGAA  350

seq1  TAAAGTGGACTTCTTCATAAGCAATCTGAGGCATTTGGGTAAGGAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGACTTCTTCATAAGCAATCTGAGGCATTTGGGTAAGGAATGTC  400

seq1  CTGTCCTGAGCCACACTCCGTGAAATTGGTACCCTGAATCACTAAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGAGCCACACTCCGTGAAATTGGTACCCTGAATCACTAAGAATG  450

seq1  CCTTTGCATAGTATGGAAGCCCTGACTAAAATAAACAGACAACATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCATAGTATGGAAGCCCTGACTAAAATAAACAGACAACATAAAAA  500

seq1  TGAAAAAAAAAAGAATAGTTGATATAATTTCAAGATAGAAACCAGGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAAAGAATAGTTGATATAATTTCAAGATAGAAACCAGGATTC  550

seq1  TGGCTGTGACTCCAAGTTGCTAAGAGATAAGAATTGTCATTGATTCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGACTCCAAGTTGCTAAGAGATAAGAATTGTCATTGATTCAACT  600

seq1  GTGGATTGGCTGACTAAAGAAGACATTGCTGGAAGCATCTGCAGTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGGCTGACTAAAGAAGACATTGCTGGAAGCATCTGCAGTATTCC  650

seq1  AGAAGGCCCTGATGGAATGGCCTCTCCAGCCTTCATCACTTCAAGCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCCTGATGGAATGGCCTCTCCAGCCTTCATCACTTCAAGCAACC  700

seq1  AACTCTCCTGTCAGCCAACCCAGGTCTTCTCAGTGTCGGCCTCTTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCTGTCAGCCAACCCAGGTCTTCTCAGTGTCGGCCTCTTGCTTG  750

seq1  GCTTGGTACATGGCTGCCTTGGGGACTCAGGCACGACCATG-AAGCCCTT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTGGTACATGGCTGCCTTGGGGACTCAGGCACGACCATGAAAGCCCTT  800

seq1  CCCTCAACTGTCTTCTTCCAGTCCCCTCACCTTTTCTTTCGGACCTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACTGTCTTCTTCCAGTCCCCTCACCTTTTCTTTCGGACCTTTCC  850

seq1  ATGTCAAAGACTGATCCCTTCTTACGTATTCTTGTCT-GGGGGCATCCAC  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTCAAAGACTGATCCCTTCTTACGTATTCTTGTCTGGGGGGCATCCAC  900

seq1  AGATTGCAGACAGGCAATTGATTTT-GTTCAGCTTTGAACCCAAAGGCTA  947
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  AGATTGCAGACAGGCAATTGATTTTGGTTCAGCTTTGAACCC-AAGGCTA  949

seq1  ATCAAAGGTGAGGCTTTATTTTGAATGGCAAAAATATTTCTCTAATAGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGTGAGGCTTTATTTTGAATGGCAAAAATATTTCTCTAATAGGT  999

seq1  GACAAATTATCACGTGCTTCTACT-GAG-CTTTAGGGTGAAAGTCTACAC  1045
      |||||||||||||||||||||||| ||| ||| |||||| ||||||||||
seq2  GACAAATTATCACGTGCTTCTACTGGAGCCTTAAGGGTG-AAGTCTACAC  1048

seq1  T-GTGGCTAACTGGAGGCAACCTTGGCTTCCTGTACTGATTATG-CTCAC  1093
      | |||||||||||||||| || | ||||||||||||||| |||| |||||
seq2  TGGTGGCTAACTGGAGGC-ACTTGGGCTTCCTGTACTGA-TATGCCTCAC  1096

seq1  CACACTATGTTGCTATGACCTGTTCACCCTCT-GTGAGACATTTTTAAGA  1142
      |||||||||||||||||||  ||||||||||| |||  ||||||   |||
seq2  CACACTATGTTGCTATGACTGGTTCACCCTCTGGTGGAACATTT---AGA  1143

seq1  GCTTCTATT  1151
      |||||||||
seq2  GCTTCTATT  1152

seq1: chr1_175363984_175364199
seq2: B6Ng01-235N23.g_74_289 (reverse)

seq1  CACACACACACACACACACACACACACACATATATATATACATAGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATATATATACATAGTGTGA  50

seq1  ATGACACCCAGAGCCTCTTCTCTATCATCGTTTCTTCTCAGCTTGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCCAGAGCCTCTTCTCTATCATCGTTTCTTCTCAGCTTGGTTCC  100

seq1  TTCTGTCATCAACGCCATAAGCATAGCACCGCAGTTATCATTTATAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATCAACGCCATAAGCATAGCACCGCAGTTATCATTTATAGCTA  150

seq1  CCCTGCCTCAAGTATTAAACTGAGGTTTAGATGCTTCTTTTCCTCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCAAGTATTAAACTGAGGTTTAGATGCTTCTTTTCCTCCAATG  200

seq1  GCTTTGCCTCCTTAGG  216
      ||||||||||||||||
seq2  GCTTTGCCTCCTTAGG  216