BAC Information

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BAC

Clone NameB6Ng01-235O14
Chromosome1 (Build37)
Map Location 50,056,865 - 50,057,863
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O14.bB6Ng01-235O14.g
ACCGA047269GA047270
length1,125989
definitionB6Ng01-235O14.b B6Ng01-235O14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgatccacttagatttgaccttagaacaaggagataagaatg
gatcaattcgtattcttctacatgataaccaccagttgtgccagctccat
ttgttgaaaatgctgtcttttttcctctggatggttttagcttccttgtc
aaagatcaagtgaccataggtgtgtgggttcatttctgggtcgtcaattc
tattccattgatgtacttgtctatcgatataccagtaccatgcagtttgt
atcaaaattgttctgtagtacagctttaggtcaggcatggtgatttcacc
agaggttcttttatctttgagaagagtttttactatcctaggttttttgt
tattccagatgaatttgcaaattgccctttctaactcgttgaagaattca
gttgtattttgatggggattgcattgaatctgtagattgcttttggcaag
atagctatttttactatattgatcctgccaatccatgagcatgggagatc
ttttcatcttctgagatctactttaatttatttcttaagagacttgaagt
tctgatcatacagatctttcacttccttagagtcatgccaaactatttta
tattatttgtgactattgtgaagggtgttgtttccctaatttctttctca
gcctgtttattctttgtgtagaggaaggccattgacttgtctgagttaat
tttatatccatctacttcattgaagctgtttatcaggtttaggagttctg
tggtgtaatagttagggtcacttatatatactatcatatcattttaaaaa
gtgataatttgacttcttcatttccaatttgtatccccttaatttccttt
tgttgtcgaattgctctgggtaggacttcaagtactatgttgaataggta
gggagaagtgggcagtcttttctagtccctgattttagtgggatagcttc
cagcatctcaccatttactttgatgttggctactgggtttgctgtagatt
gcttttatgatgttagttatggggctttgattcttgatctctccagactt
ttatcatgaatgggtgttggattttgtgaattgcttctcacatctaggag
atggatcatgtgaattttgtgcctt
gaattcttcagctaaaattgaaattgcttgtgttctactgttatgcattc
ttttgtgagaatcccagctttaaatcatcagcccaggtgtgctcctaatt
tttgttaactttgagatttcaagaaacttttctaaatctgttctaaatta
atactaatggttgatctttttttatactaagttagagaaaacatggattt
caatatgatgtctaacacacaaaatatctcagagacataatttatgtttt
tataacttttaaattctgtatttatagaaagtgctgccctaattttattt
tatttttaataattctcaaaaacatgatgcctgagagaaatgatcagcca
acccaactcaaagaaaagcaacaatagttgaatggttgcttatacagaaa
gatgtatccttaaaataaatacacctagtattatccatgtaccatatcag
taggtctgatgatctatcaacagtgtcaaaacttttaacgcttgggatac
tgtcttatcttccttaaagtttataatggagaatcacacaattgacttta
aaacaaggaaatggccataaacctctcttattactcaaagttagtttatg
attttttttttttttttttttttttttttttttttggtaacaggcatttt
tggatcttgtgggtagggaatcaggcaagtgctggccttggcctgcaagt
taagcatgcttgaaagtaaaagaaaaatagctcagaaaatttgaagcatc
ttcctctggtgaccctctcctgtatcagagagaggaagacatgtttgtca
aagaagactctttgttattcagagaagagaatgttaaattgaagtaaaga
agcaaataggaatgttatagagtaagttagtgggaactgccatgagacaa
ttgcaaacatttgaaagcacaacataaagctctagttatatcaatatact
catatgttagctcctactaaactagatactagagactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50056865_50057863
seq2: B6Ng01-235O14.g_67_1055

seq1  GAATTCTTCAGCTAAAATTGAAA-TGCTTGTGTTCTACTGTTATGCATTC  49
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATTCTTCAGCTAAAATTGAAATTGCTTGTGTTCTACTGTTATGCATTC  50

seq1  TTTTGTGAGAATCCCAGCTTTAAATCATCAGCCCAGGTGTGCTCCTAATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAGAATCCCAGCTTTAAATCATCAGCCCAGGTGTGCTCCTAATT  100

seq1  TTTGTTAACTTTGAGATTTCAAGAAACTTTTCTAAATCTGTTCTAAATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAACTTTGAGATTTCAAGAAACTTTTCTAAATCTGTTCTAAATTA  150

seq1  ATACTAATGGTTGATCTTTTTTTATACTAAGTTAGAGAAAACATGGATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATGGTTGATCTTTTTTTATACTAAGTTAGAGAAAACATGGATTT  200

seq1  CAATATGATGTCTAACACACAAAATATCTCAGAGACATAATTTATGTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGATGTCTAACACACAAAATATCTCAGAGACATAATTTATGTTTT  250

seq1  TATAACTTTTAAATTCTGTATTTATAGAAAGTGCTGCCCTAATTTTATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTTAAATTCTGTATTTATAGAAAGTGCTGCCCTAATTTTATTT  300

seq1  TATTTTTAATAATTCTCAAAAACATGATGCCTGAGAGAAATGATCAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATAATTCTCAAAAACATGATGCCTGAGAGAAATGATCAGCCA  350

seq1  ACCCAACTCAAAGAAAAGCAACAATAGTTGAATGGTTGCTTATACAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTCAAAGAAAAGCAACAATAGTTGAATGGTTGCTTATACAGAAA  400

seq1  GATGTATCCTTAAAATAAATACACCTAGTATTATCCATGTACCATATCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCCTTAAAATAAATACACCTAGTATTATCCATGTACCATATCAG  450

seq1  TAGGTCTGATGATCTATCAACAGTGTCAAAACTTTTAACGCTTGGGATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGATGATCTATCAACAGTGTCAAAACTTTTAACGCTTGGGATAC  500

seq1  TGTCTTATCTTCCTTAAAGTTTATAATGGAGAATCACACAATTGACTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATCTTCCTTAAAGTTTATAATGGAGAATCACACAATTGACTTTA  550

seq1  AAACAAGGAAATGGCCATAAACCTCTCTTATTACTCAAAGTTAGTTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGAAATGGCCATAAACCTCTCTTATTACTCAAAGTTAGTTTATG  600

seq1  ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAACGGCATTTT  649
      ||||||||||||||||||||||||||||||||||| || |  ||||||||
seq2  ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAACAGGCATTTT  650

seq1  TGGATCTTGTGGGTA-GGAATCAGGCAGGTGCTGGCCTTGGCCTGCAGGT  698
      ||||||||||||||| ||||||||||| ||||||||||||||||||| ||
seq2  TGGATCTTGTGGGTAGGGAATCAGGCAAGTGCTGGCCTTGGCCTGCAAGT  700

seq1  TAGGCATGCTTGAAAGTAAAAGAAAAATAGCTCAGAAAATTTGAGGCATC  748
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAGCATGCTTGAAAGTAAAAGAAAAATAGCTCAGAAAATTTGAAGCATC  750

seq1  TTCCTCTGGTGACCCTCTCCTGTATCAGAGAGAGGAAGACATG-TTGTCA  797
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCCTCTGGTGACCCTCTCCTGTATCAGAGAGAGGAAGACATGTTTGTCA  800

seq1  AGGAAGACTCTT--GTATTCAAGAG-AGAGAATGTTAAATTGAAGTAAAG  844
      | ||||||||||   ||||| |||| ||||||||||||||||||||||||
seq2  AAGAAGACTCTTTGTTATTC-AGAGAAGAGAATGTTAAATTGAAGTAAAG  849

seq1  -AGCAAATAGGGAATGTTATAGAGTAGGTAAGTGGG-ACTGCCAATGAGG  892
       |||||||| |||||||||||||||| || |||||| |||||| |||| |
seq2  AAGCAAATA-GGAATGTTATAGAGTAAGTTAGTGGGAACTGCC-ATGA-G  896

seq1  ACAATTGCAAACATTTGAAAGCAACAACATAAAAGCTCTAGTTATAATCC  942
      |||||||||||||||||||||| ||||||| |||||||||||||||   |
seq2  ACAATTGCAAACATTTGAAAGC-ACAACAT-AAAGCTCTAGTTATA--TC  942

seq1  AATATACTCAATATGTTTAGCTCCCTTCACTAAAACTTAAGATACTTAAG  992
      ||||||||| ||||| ||||||||    ||| |||||  |||||||  ||
seq2  AATATACTC-ATATG-TTAGCTCC---TACT-AAACT--AGATACT--AG  982

seq1  AGACTAG  999
      |||||||
seq2  AGACTAG  989