BAC Information

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BAC

Clone NameB6Ng01-236E14
Chromosome1 (Build37)
Map Location 132,523,060 - 132,597,235
singlet/doubletdoublet
Overlap geneZp3r, C4bp, C4bp-ps1, Pfkfb2
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55
Downstream geneYod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236E14.bB6Ng01-236E14.g
ACCGA047542GA047543
length2531,120
definitionB6Ng01-236E14.b B6Ng01-236E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,523,060 - 132,523,312)(132,596,108 - 132,597,235)
sequence
aaggcccatacctagacttaataaaagcaatatacagcaaaccagtagcc
aatatcaaagtataagccacatttaagagtagcttttacacgcagcaata
gatgtacatggttttgtttgggctttttgtttgttttgttttaaacttac
tggtattttgctgtgtgttatgttttctgattttgtgtggtttatgattt
gtgggtttgtgcgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgt
gtg
gaattcagcttagacaaccagtgccttacactttatgaattggttaagat
ctctagggaacagggtgagaagctatcttctgagttgagaatgttgtaga
atgaacatgatcttcttacattttccattctgttccttctacttcaaagc
agatagagtcaccgagtgagtacgagttacttcctcaccatggttgaggc
actgccctattgatgtggcttcctactgtagggaagtgtgtgtggtaata
aatgagtctcagaggttcgggaaacctgcacaactcttttgttgctacac
actgcttcttctagtgcttgtgaggaaaagaaaaataaattgaattcaca
cttaacatttcttgaactgtggtgtttgatctaaatattacttctgaaag
atctgagtattctttagaaccaggactggggcagttaggcaacatagagg
cactccatgagtagtctcttgactctggaactccgccaccaacttggctg
ccagcatgctcctggcctcttaccagctctccttacttcccctcaaagtc
ctaccaggacctggtgcagcggctggagcctgtcatcatggagctagagc
gtcaaggcaacatcctcgttatctctcaccaggctgtcatgcgctgcctc
ctggcctacttcttggataaaggcgcaggtgccgtttgagggaaggatgg
aagaggggctacacatccaaagggataggttggacttggtgctagcggga
ttcttgactaccggctctccctttcttccactcatattagagacattctt
caggcagcagtgaggagctcccagcagccattggtcagtcactattccct
tcagtctgctgccacaaaagctggcaatggaaggatggctgatttttgct
gcctgatctgcctaaagggccagcctcaagctgacattaccggcagcatc
aaggctggtggttgagcagtcagtttgtgttcttctagctattgcagatg
gtttattaggacaatcttcactctttgggtcgggagtagagcagtgtttt
aagaaagcagtagaggtgctactctgctctttcttccagtctcaaggtcc
cttaagcttgactgcttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132523060_132523312
seq2: B6Ng01-236E14.b_49_301

seq1  AAGGCCCATACCTAGACTTAATAAAAGCAATATACAGCAAACCAGTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCATACCTAGACTTAATAAAAGCAATATACAGCAAACCAGTAGCC  50

seq1  AATATCAAAGTATAAGCCACATTTAAGAGTAGCTTTTACACGCAGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAAGTATAAGCCACATTTAAGAGTAGCTTTTACACGCAGCAATA  100

seq1  GATGTACATGGTTTTGTTTGGGCTTTTTGTTTGTTTTGTTTTAAACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACATGGTTTTGTTTGGGCTTTTTGTTTGTTTTGTTTTAAACTTAC  150

seq1  TGGTATTTTGCTGTGTGTTATGTTTTCTGATTTTGTGTGGTTTATGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTGCTGTGTGTTATGTTTTCTGATTTTGTGTGGTTTATGATTT  200

seq1  GTGGGTTTGTGCGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGTGCGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGT  250

seq1  GTG  253
      |||
seq2  GTG  253

seq1: chr1_132596108_132597235
seq2: B6Ng01-236E14.g_65_1184 (reverse)

seq1  GAAAAGCCAGTCAAAGGCTTTAAGGGGCCTGAGGACTGGGGAAAGAAAGA  50
      |||||| |||||||  || ||||||| |||   ||||||   ||||||||
seq2  GAAAAG-CAGTCAA--GC-TTAAGGGACCTTGAGACTGG---AAGAAAGA  43

seq1  GCCAGAGTAGCACCTCCTACTGCTTTCTTAAAACAACTGCTCTACTCCCG  100
      | ||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  G-CAGAGTAGCACCT-CTACTGCTTTCTTAAAAC-ACTGCTCTACTCCCG  90

seq1  ACCCAAAGGGTGAAGATTGTCCTAATAAACCATCTGCAATAGCTAGA--G  148
      |||||||| ||||||||||||||||||||||||||||||||||||||   
seq2  ACCCAAAGAGTGAAGATTGTCCTAATAAACCATCTGCAATAGCTAGAAGA  140

seq1  ACACAAACTGACTGCTCAACCACCAGCCTTGATGCTGCCGGTAATGTCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTGACTGCTCAACCACCAGCCTTGATGCTGCCGGTAATGTCAG  190

seq1  CTTGAGGCTGGCCCTTTAGGCAGATCAGGCAGCAAAAAATCAGCCATCC-  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTTGAGGCTGGCCCTTTAGGCAGATCAGGCAGC-AAAAATCAGCCATCCT  239

seq1  TCCATTGCCAGCTTTTGTGGCAGCAGACTGAAGGGAATAGTGACTGACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCCAGCTTTTGTGGCAGCAGACTGAAGGGAATAGTGACTGACCA  289

seq1  ATGGCTGCTGGGAGCTCCTCACTGCTGCCTGAAGAATGTCTCTAATATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCTGGGAGCTCCTCACTGCTGCCTGAAGAATGTCTCTAATATGA  339

seq1  GTGGAAGAAAGGGAGAGCCGGTAGTCAAGAATCCCGCTAGCACCAAGTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAAAGGGAGAGCCGGTAGTCAAGAATCCCGCTAGCACCAAGTCC  389

seq1  AACCTATCCCTTTGGATGTGTAGCCCCTCTTCCATCCTTCCCTCAAACGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCCCTTTGGATGTGTAGCCCCTCTTCCATCCTTCCCTCAAACGG  439

seq1  CACCTGCGCCTTTATCCAAGAAGTAGGCCAGGAGGCAGCGCATGACAGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCGCCTTTATCCAAGAAGTAGGCCAGGAGGCAGCGCATGACAGCC  489

seq1  TGGTGAGAGATAACGAGGATGTTGCCTTGACGCTCTAGCTCCATGATGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAGATAACGAGGATGTTGCCTTGACGCTCTAGCTCCATGATGAC  539

seq1  AGGCTCCAGCCGCTGCACCAGGTCCTGGTAGGACTTTGAGGGGAAGTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAGCCGCTGCACCAGGTCCTGGTAGGACTTTGAGGGGAAGTAAG  589

seq1  GAGAGCTGGTAAGAGGCCAGGAGCATGCTGGCAGCCAAGTTGGTGGCGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGGTAAGAGGCCAGGAGCATGCTGGCAGCCAAGTTGGTGGCGGA  639

seq1  GTTCCAGAGTCAAGAGACTACTCATGGAGTGCCTCTATGTTGCCTAACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAGTCAAGAGACTACTCATGGAGTGCCTCTATGTTGCCTAACTG  689

seq1  CCCCAGTCCTGGTTCTAAAGAATACTCAGATCTTTCAGAAGTAATATTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCCTGGTTCTAAAGAATACTCAGATCTTTCAGAAGTAATATTTA  739

seq1  GATCAAACACCACAGTTCAAGAAATGTTAAGTGTGAATTCAATTTATTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACACCACAGTTCAAGAAATGTTAAGTGTGAATTCAATTTATTTT  789

seq1  TCTTTTCCTCACAAGCACTAGAAGAAGCAGTGTGTAGCAACAAAAGAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCACAAGCACTAGAAGAAGCAGTGTGTAGCAACAAAAGAGTT  839

seq1  GTGCAGGTTTCCCGAACCTCTGAGACTCATTTATTACCACACACACTTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTTTCCCGAACCTCTGAGACTCATTTATTACCACACACACTTCC  889

seq1  CTACAGTAGGAAGCCACATCAATAGGGCAGTGCCTCAACCATGGTGAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTAGGAAGCCACATCAATAGGGCAGTGCCTCAACCATGGTGAGGA  939

seq1  AGTAACTCGTACTCACTCGGTGACTCTATCTGCTTTGAAGTAGAAGGAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCGTACTCACTCGGTGACTCTATCTGCTTTGAAGTAGAAGGAAC  989

seq1  AGAATGGAAAATGTAAGAAGATCATGTTCATTCTACAACATTCTCAACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAAAATGTAAGAAGATCATGTTCATTCTACAACATTCTCAACTC  1039

seq1  AGAAGATAGCTTCTCACCCTGTTCCCTAGAGATCTTAACCAATTCATAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAGCTTCTCACCCTGTTCCCTAGAGATCTTAACCAATTCATAAA  1089

seq1  GTGTAAGGCACTGGTTGTCTAAGCTGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  GTGTAAGGCACTGGTTGTCTAAGCTGAATTC  1120