BAC Information

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BAC

Clone NameB6Ng01-236F06
Chromosome1 (Build37)
Map Location 93,817,597 - 94,004,528
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236F06.bB6Ng01-236F06.g
ACCGA047574GA047575
length1,124913
definitionB6Ng01-236F06.b B6Ng01-236F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,817,597 - 93,818,731)(94,003,622 - 94,004,528)
sequence
gaattcttggtcaaaagttcagcagagcagcttgtccgtgaacgggcttc
ctagggaacaagtgaacagcagtaaatagataacgttgcccagcagacac
tgacagggaggttgaggcagtcggtgggagttccctgctgagctttctct
ccatggctgaactcccagcttccagtttccatgtctgacactctgtatat
catagacaatagtaacctctgttgcaaatggttttccttctaagctgttc
ttaagaacacagtgtttctattctcaggccgtttcccatctcgggttggc
tgggaggacgtttgacacaagcatgcttgggtctgaagtaggaacatctc
agtgaactcaaacagcatgtgggcttgccagagattctgaacacaggcat
ctcagtgccaacgtctccatgaactcaaacagcatgcagcaatttatcaa
tacaatgttctttcctgggtgttagagagcaggactctggtggatgtggc
cagaaggtcacttgcttttgtccacacagccactcccccaggcagtactg
tcctcattccatctgtagccaacagcactagcgcacaccagaccccctta
gccctctgagcagcttggcctcaaagcaacttggttgtgtcaaatggctc
aaggcacatttttaacttggacttgggcacagaaagagaaaacataggga
tgcatctatgatagaaggggaaaaaaaaaaactgtctgtgctgagccaaa
ctcttgtctccttagcgtgtcacatttcccctgagggtgtgtctctgcag
gtcatcagccaaaggggcctcagcttggaggcaggaagggtttcatccca
agggacaaaagtgaaaagccaggagccgagtccccagcgcacccaaggca
actgcttgttcagcgctccctggcctgcctcctccatgagagctggatgg
gctccaggcaagtacttctgaacggtagggtatggaagacactactgatg
gggagtgagtggggctaaagttaactctagacagatagactcaggtaaaa
tccattctgagctactcagagagagatacagggcagctccacggaaggac
ttcttgactgtcgtacaggatcgg
gaattcagggccagctcagattaaaaaaacaaacaaacaaaaacaaacaa
acaaacaaacaaagaagcatcaggaatagggcagccttgtgaaagcctga
tgtaatccagcctgtgttcttatcccaggctcgcagctccctgtggcagg
caggtaatggtatgggttaggtgttgcaccctactccagtccactcttgg
aggaggaacagtccctgtggtaagaaatattttcatcctttgatggtggc
agctgtcacgtgagacaattgccatatcaagacttgggctgaggggagtt
tcccctttcccagaggggcctgcagcaggtatttggaacagggaggctga
cctctatgaagtgactgctacctgtttcaaaggcactgtagaaaggcctt
agttcccatcagcagacctggaaggcaggctttgagggctgggtgttctt
agctggagccgagaagaggatcaggggtgtatcttctcagatgggatggg
tcaaagaggactgagcttttctctccaaggagggcttgtgtggacccctt
gtaggactctgccatgaggtagcatgggcacaagtgcacatggtgagaaa
aacggacttctacactagtgagatggctcaggggggtaaaggtacctgcc
accaagcctgacttgcctgagttttagtcttctgggcccacatagtggaa
ggagacaactaactctaggaagttgtcctctgttctctacatgtgtgctg
tgacacatagttagacacatgcatgcatgcatacacatttagggaaaaca
aagtgcttcctataggcctgcaataagtctttttagagagaagggaaagg
aagaaaggagcaagctgggggaaattgggtcccttttatttcttatgctc
gtggggaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93817597_93818731
seq2: B6Ng01-236F06.b_47_1170

seq1  GAATTCTTGGTCAAAAGTTCAGCAGAGCAGCTTGTCCGTGAACGGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCAAAAGTTCAGCAGAGCAGCTTGTCCGTGAACGGGCTTC  50

seq1  CTAGGGAACAAGTGAACAGCAGTAAATAGATAACGTTGCCCAGCAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAACAAGTGAACAGCAGTAAATAGATAACGTTGCCCAGCAGACAC  100

seq1  TGACAGGGAGGTTGAGGCAGTCGGTGGGAGTTCCCTGCTGAGCTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGAGGTTGAGGCAGTCGGTGGGAGTTCCCTGCTGAGCTTTCTCT  150

seq1  CCATGGCTGAACTCCCAGCTTCCAGTTTCCATGTCTGACACTCTGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGAACTCCCAGCTTCCAGTTTCCATGTCTGACACTCTGTATAT  200

seq1  CATAGACAATAGTAACCTCTGTTGCAAATGGTTTTCCTTCTAAGCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACAATAGTAACCTCTGTTGCAAATGGTTTTCCTTCTAAGCTGTTC  250

seq1  TTAAGAACACAGTGTTTCTATTCTCAGGCCGTTTCCCATCTCGGGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACACAGTGTTTCTATTCTCAGGCCGTTTCCCATCTCGGGTTGGC  300

seq1  TGGGAGGACGTTTGACACAAGCATGCTTGGGTCTGAAGTAGGAACATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGACGTTTGACACAAGCATGCTTGGGTCTGAAGTAGGAACATCTC  350

seq1  AGTGAACTCAAACAGCATGTGGGCTTGCCAGAGATTCTGAACACAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTCAAACAGCATGTGGGCTTGCCAGAGATTCTGAACACAGGCAT  400

seq1  CTCAGTGCCAACGTCTCCATGAACTCAAACAGCATGCAGCAATTTATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCCAACGTCTCCATGAACTCAAACAGCATGCAGCAATTTATCAA  450

seq1  TACAATGTTCTTTCCTGGGTGTTAGAGAGCAGGACTCTGGTGGATGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTTCTTTCCTGGGTGTTAGAGAGCAGGACTCTGGTGGATGTGGC  500

seq1  CAGAAGGTCACTTGCTTTTGTCCACACAGCCACTCCCCCAGGCAGTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTCACTTGCTTTTGTCCACACAGCCACTCCCCCAGGCAGTACTG  550

seq1  TCCTCATTCCATCTGTAGCCAACAGCACTAGCGCACACCAGACCCCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTCCATCTGTAGCCAACAGCACTAGCGCACACCAGACCCCCTTA  600

seq1  GCCCTCTGAGCAGCTTGGCCTCAAAGCAACTTGGTTGTGTCAAATGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGAGCAGCTTGGCCTCAAAGCAACTTGGTTGTGTCAAATGGCTC  650

seq1  AAGGCACATTTTTAACTTGGACTTGGGCACAGAAAGAGAAAACATAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACATTTTTAACTTGGACTTGGGCACAGAAAGAGAAAACATAGGGA  700

seq1  TGCATCTATGATAGAAGGGGAAAAAAAAAAACTGTCTGTGCTGAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATGATAGAAGGGGAAAAAAAAAAACTGTCTGTGCTGAGCCAAA  750

seq1  CTCTTGTCTCCTTAGCGTGTCACATTTCCCCTGAGGGTGTGTCTCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCCTTAGCGTGTCACATTTCCCCTGAGGGTGTGTCTCTGCAG  800

seq1  GTCATCAGCCAAAGGGGCCTCAGGCTTGGAGGCAGGAAGGG-TTCATCCC  849
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GTCATCAGCCAAAGGGGCCTCA-GCTTGGAGGCAGGAAGGGTTTCATCCC  849

seq1  AAGGGACAAAAGTGAAAAGCCAGGAGCCGAGTCCCCAGCGCACCCAAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGGGACAAAAGTGAAAAGCCAGGAGCCGAGTCCCCAGCGCACCCAA-GG  898

seq1  CAACTGCTTGTTCAGCGCTCCCTGGCCTGCCTCCTCCATGAGAGCTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTTGTTCAGCGCTCCCTGGCCTGCCTCCTCCATGAGAGCTGGAT  948

seq1  GGGCTCCAGGCAAGGTACTTCTGAAGGGTAGGGTATGGAAGACACTAACT  999
      ||||||||||||| ||||||||||| |||||||||||||||||||| |||
seq2  GGGCTCCAGGCAA-GTACTTCTGAACGGTAGGGTATGGAAGACACT-ACT  996

seq1  GATGGGGAGTGAGTGGGGCTAAAGTTTAGACTCTAGACAAGATAGACTCA  1049
      ||||||||||||||||||||||||||   ||||||||| |||||||||||
seq2  GATGGGGAGTGAGTGGGGCTAAAGTT--AACTCTAGAC-AGATAGACTCA  1043

seq1  GGGTAAAAAACCATTCTGAGCTACTCAGAAGAGAGATACAGGGCAGCTCC  1099
      ||   |||| |||||||||||||||||| |||||||||||||||||||||
seq2  GG--TAAAATCCATTCTGAGCTACTCAG-AGAGAGATACAGGGCAGCTCC  1090

seq1  ACGGAAGGAGCTCCTGGACTGTCGTAGCAGGATCGG  1135
      ||||||||| || || |||||||||| |||||||||
seq2  ACGGAAGGA-CTTCTTGACTGTCGTA-CAGGATCGG  1124

seq1: chr1_94003622_94004528
seq2: B6Ng01-236F06.g_65_977 (reverse)

seq1  CCCACCTCCCCACGAGCATAAGAA--TAAAGGGA-CCAATTT-CCCCAGC  46
      ||||||||||||||||||||||||   ||||||| ||||||| |||||||
seq2  CCCACCTCCCCACGAGCATAAGAAATAAAAGGGACCCAATTTCCCCCAGC  50

seq1  TTGCTCCTTTCTTCCTTTCCCTTCTCTCT-AAAAGACTTATTGCAGGCCT  95
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGCTCCTTTCTTCCTTTCCCTTCTCTCTAAAAAGACTTATTGCAGGCCT  100

seq1  ATAGGAAGCACTTTGTTTTCCCTAAATGTGTATGCATGCATGCATGTGTC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCACTTTGTTTTCCCTAAATGTGTATGCATGCATGCATGTGTC  150

seq1  TAACTATGTGTCACAGCACACATGTAGAGAACAGAGGACAACTTCCTAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGTGTCACAGCACACATGTAGAGAACAGAGGACAACTTCCTAGA  200

seq1  GTTAGTTGTCTCCTTCCACTATGTGGGCCCAGAAGACT-AAACTCAGGCA  244
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTAGTTGTCTCCTTCCACTATGTGGGCCCAGAAGACTAAAACTCAGGCA  250

seq1  AGTCAGGCTTGGTGGCAGGTACCTTTACCCCCCTGAGCCATCTCACTAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTTGGTGGCAGGTACCTTTACCCCCCTGAGCCATCTCACTAGT  300

seq1  GTAGAAGTCCGTTTTTCTCACCATGTGCACTTGTGCCCATGCTACCTCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTCCGTTTTTCTCACCATGTGCACTTGTGCCCATGCTACCTCAT  350

seq1  GGCAGAGTCCTACAAGGGGTCCACACAAGCCCTCCTTGGAGAGAAAAGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTCCTACAAGGGGTCCACACAAGCCCTCCTTGGAGAGAAAAGCT  400

seq1  CAGTCCTCTTTGACCCATCCCATCTGAGAAGATACACCCCTGATCCTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCTTTGACCCATCCCATCTGAGAAGATACACCCCTGATCCTCTT  450

seq1  CTCGGCTCCAGCTAAGAACACCCAGCCCTCAAAGCCTGCCTTCCAGGTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCTCCAGCTAAGAACACCCAGCCCTCAAAGCCTGCCTTCCAGGTCT  500

seq1  GCTGATGGGAACTAAGGCCTTTCTACAGTGCCTTTGAAACAGGTAGCAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGGAACTAAGGCCTTTCTACAGTGCCTTTGAAACAGGTAGCAGT  550

seq1  CACTTCATAGAGGTCAGCCTCCCTGTTCCAAATACCTGCTGCAGGCCCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATAGAGGTCAGCCTCCCTGTTCCAAATACCTGCTGCAGGCCCCT  600

seq1  CTGGGAAAGGGGAAACTCCCCTCAGCCCAAGTCTTGATATGGCAATTGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGGGGAAACTCCCCTCAGCCCAAGTCTTGATATGGCAATTGTC  650

seq1  TCACGTGACAGCTGCCACCATCAAAGGATGAAAATATTTCTTACCACAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGACAGCTGCCACCATCAAAGGATGAAAATATTTCTTACCACAGG  700

seq1  GACTGTTCCTCCTCCAAGAGTGGACTGGAGTAGGGTGCAACACCTAACCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTCCTCCTCCAAGAGTGGACTGGAGTAGGGTGCAACACCTAACCC  750

seq1  ATACCATTACCTGCCTGCCACAGGGAGCTGCGAGCCTGGGATAAGAACAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTACCTGCCTGCCACAGGGAGCTGCGAGCCTGGGATAAGAACAC  800

seq1  AGGCTGGATTACATCAGGCTTTCACAAGGCTGCCCTATTCCTGATGCTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATTACATCAGGCTTTCACAAGGCTGCCCTATTCCTGATGCTTC  850

seq1  TTTGTTTGTTTGTTTGTTTGTTTTTGTTTGTTTGTTTTTTTAATCTGAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTTTGTTTGTTTGTTTTTTTAATCTGAGC  900

seq1  TGGCCCTGAATTC  907
      |||||||||||||
seq2  TGGCCCTGAATTC  913