BAC Information

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BAC

Clone NameB6Ng01-236H11
Chromosome1 (Build37)
Map Location 51,590,350 - 51,591,501
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236H11.bB6Ng01-236H11.g
ACCGA047677GA047678
length3901,165
definitionB6Ng01-236H11.b B6Ng01-236H11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttaggcttttcaacccaggaacttagaatgtcaaaatcctgggttgtat
cttgctattcattacatgttttcctctttaaaagcagtcagatacatatt
gaacataattcatgtggcggtttgagtaagaatgaccctcataggctcat
gtatttgagtctttagtcaatagggaacagaaccacagagtttgaaagga
ttaaaaggatgaagtcagagaaagggtaggctttgaggttttaaaagttg
accccagatccaatctctctctctctctctctctctctctctctctctct
ctctctctctttctctgtctctctctctctctctatttgtgtttcttttt
tactaattacttttttccttagaccattaaacagtatctt
gaattcttcttacagaacatagtggggaatgcttctttgggatcttcatt
ctttaacaactaagttggaaaaatgaagaagaattattcaaggtctcatt
aatatatttgtttgcaattggtgctggctatcagccactttttgtgagca
aagctcaccttgtctgtttgcttattccttgtatgtgtcctggataacag
gatagttaacattaactggcactaggaataccgcccttagatgttaagga
ctggaggttttatttgtatatctagagcaatggtctgtcccacttgagtt
tgtcaggctattttgcacaaagattgagattaatagcacatgtcaggttt
cagtcttagggctttaagttttagctgctttggctgcatgcataaaaaga
tgtgttttgtgaccagcactccaaatgccttggttccttgtacgtgctcc
agttgtttactgctagagggaatgaaagtctcatatcctctgaagaagga
ctccagagcctgggctggggctctgtccaggcaagatgtcaaacagaaaa
tcataaccatgaactagaaacaaggccaggtagcagaaggtgacatctcg
gtgatgccaagaacatttgacttagaattcaaggcaacactacctacggt
gggaagaggccactgaaaagtcatcaagcagggcacatgaactgtgatgt
gtggactattgggtatcgtcacactacctggcacaagaaattataccaga
gcagtgcaatgaggtggcatcttaggtggaccaatggcttgaagacatta
agaactctaaggaacacagactttcatgttccctcagttaagctattttc
ttagttaggattgtctattgctgtgaggaaacaccgtgaccatagagcaa
gtgggaaaaggaaaggtttattttggcttacacttccaggtcactgttta
tcatcaaaggaagttcaagacaggaacacaaaacaggcaggagccaggga
ggcaagagtttgacacagaagccatggagggggttgtttgcttaactggc
cttgcctcattcatggattgttaagcctgcttcacacagagccaagaccc
accagccaggcatggtatcactcattattgggcttaggccctctatattc
atccctagttaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51590350_51591501
seq2: B6Ng01-236H11.g_64_1228

seq1  GAATTCTTCTTACAGAACATAGTGGGGAATGCTTCTTTGGGATCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACAGAACATAGTGGGGAATGCTTCTTTGGGATCTTCATT  50

seq1  CTTTAACAACTAAGTTGGAAAAATGAAGAAGAATTATTCAAGGTCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAACTAAGTTGGAAAAATGAAGAAGAATTATTCAAGGTCTCATT  100

seq1  AATATATTTGTTTGCAATTGGTGCTGGCTATCAGCCACTTTTTGTGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTGTTTGCAATTGGTGCTGGCTATCAGCCACTTTTTGTGAGCA  150

seq1  AAGCTCACCTTGTCTGTTTGCTTATTCCTTGTATGTGTCCTGGATAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACCTTGTCTGTTTGCTTATTCCTTGTATGTGTCCTGGATAACAG  200

seq1  GATAGTTAACATTAACTGGCACTAGGAATACCGCCCTTAGATGTTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTAACATTAACTGGCACTAGGAATACCGCCCTTAGATGTTAAGGA  250

seq1  CTGGAGGTTTTATTTGTATATCTAGAGCAATGGTCTGTCCCACTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTTTTATTTGTATATCTAGAGCAATGGTCTGTCCCACTTGAGTT  300

seq1  TGTCAGGCTATTTTGCACAAAGATTGAGATTAATAGCACATGTCAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCTATTTTGCACAAAGATTGAGATTAATAGCACATGTCAGGTTT  350

seq1  CAGTCTTAGGGCTTTAAGTTTTAGCTGCTTTGGCTGCATGCATAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAGGGCTTTAAGTTTTAGCTGCTTTGGCTGCATGCATAAAAAGA  400

seq1  TGTGTTTTGTGACCAGCACTCCAAATGCCTTGGTTCCTTGTACGTGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGTGACCAGCACTCCAAATGCCTTGGTTCCTTGTACGTGCTCC  450

seq1  AGTTGTTTACTGCTAGAGGGAATGAAAGTCTCATATCCTCTGAAGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTACTGCTAGAGGGAATGAAAGTCTCATATCCTCTGAAGAAGGA  500

seq1  CTCCAGAGCCTGGGCTGGGGCTCTGTCCAGGCAAGATGTCAAACAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCCTGGGCTGGGGCTCTGTCCAGGCAAGATGTCAAACAGAAAA  550

seq1  TCATAACCATGAACTAGAAACAAGGCCAGGTAGCAGAAGGTGACATCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACCATGAACTAGAAACAAGGCCAGGTAGCAGAAGGTGACATCTCG  600

seq1  GTGATGCCAAGAACATTTGACTTAGAATTCAAGGCAACACTACCTACGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCCAAGAACATTTGACTTAGAATTCAAGGCAACACTACCTACGGT  650

seq1  GGGAAGAGGCCACTGAAAAGTCATCAAGCAGGGCACATGAACTGTGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGCCACTGAAAAGTCATCAAGCAGGGCACATGAACTGTGATGT  700

seq1  GTGGACTATTGGGTATCGTCACACTACCTGGCACAAGAAATTATACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTATTGGGTATCGTCACACTACCTGGCACAAGAAATTATACCAGA  750

seq1  GCAGTGCAATGAGGTGGCATCTTAGGTGGACCAATGGCTTGAAGACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAATGAGGTGGCATCTTAGGTGGACCAATGGCTTGAAGACATTA  800

seq1  AGAACTCTAA-GAACACAGACTTTCATGTT-CCTCAGTTAAGCTATTTTC  848
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AGAACTCTAAGGAACACAGACTTTCATGTTCCCTCAGTTAAGCTATTTTC  850

seq1  TTAGTTAGGA-TGTCTATTGCTGTGAGGAAACACCGTGACCATAGAGCAA  897
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGGATTGTCTATTGCTGTGAGGAAACACCGTGACCATAGAGCAA  900

seq1  GTGGGAAAAGGAAAGGTTTA-TTTGGCTTACACTTCCAGGTCACTGTTTA  946
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGGGAAAAGGAAAGGTTTATTTTGGCTTACACTTCCAGGTCACTGTTTA  950

seq1  TCATCAAAGGAAG-TCAAGACAGGAACACAAACAAGGCAGGAGCCA-GGA  994
      ||||||||||||| ||||||||||||||||||  |||||||||||| |||
seq2  TCATCAAAGGAAGTTCAAGACAGGAACACAAAACAGGCAGGAGCCAGGGA  1000

seq1  GGCAAGAG-TTGACACAGAAGCCATGGAGGGG--TG-TTGCTT-ACTGG-  1038
      |||||||| |||||||||||||||||||||||  || |||||| ||||| 
seq2  GGCAAGAGTTTGACACAGAAGCCATGGAGGGGGTTGTTTGCTTAACTGGC  1050

seq1  CTTG-CTCA-TCATGGATTGTTAAGCCTGCTTTCACACAGAACCCAGGAC  1086
      |||| |||| |||||||||||||||||||| |||||||||| || ||  |
seq2  CTTGCCTCATTCATGGATTGTTAAGCCTGC-TTCACACAGAGCCAAGACC  1099

seq1  CACCAGCCCAGGCATGGTATCACTCA-TAATGGGC-TAGGCCCTCCTATA  1134
      |||||| ||||||||||||||||||| || ||||| |||||||| |||||
seq2  CACCAG-CCAGGCATGGTATCACTCATTATTGGGCTTAGGCCCT-CTATA  1147

seq1  TCAATCACTAGTTAAGAA  1152
      |  ||| |||||||||||
seq2  TTCATCCCTAGTTAAGAA  1165