BAC Information

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BAC

Clone NameB6Ng01-236L21
Chromosome1 (Build37)
Map Location 3,388,533 - 3,389,655
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L21.bB6Ng01-236L21.g
ACCGA047886GA047887
length1,1931,120
definitionB6Ng01-236L21.b B6Ng01-236L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttacaaccccatgggacaaggaatagttgaacatgctcatcgc
accttaaagaattggctttttaaaacaaaagaggggcagctatatccccc
aaggtcaccaaaggcccaccttgccttcaccttatttgtcctaaatttct
tgcacaccgatatcaaaggccagtctgcagcggattgccactggcataca
gttacttctaattcttatgcattggtaaaatggaaggaccccctgactaa
tgaatgaagggtccagagagagattggagacatactattgaaagggcaag
cccttcactgcctcccacccaaataaaaaagccaattggccttgtactac
agagctggccgaaccccttctccctgtttcccacctatcatccaaaaatg
cggaggtcaactagaaagttacctaccaagtactaattagcatcataaag
tcagagcctgcagctccaggcttttcagttagttgtttactaagaaagga
cagtcttaaaccagatacagtttaccataagaaaagttaaagaatcccag
ggaagcaagtttttttttagccctagattccaggcagaactattgagcat
aaataatttttccccctcaggccagctttttctctttttttttgttttgt
taataaaagggaggaaatatagtctcccctcccccagcctgaaacctgct
tgctcaggggtggagcttcctgctcattcgttctgccacgcccactgcta
gaacctgcggagccacacacgtgcacctttctactggaccagagattatt
cagcgggagtcgggtcccctcccccttcctttataactagtgtcgcaaca
ataaaatttgagctttgatcagaatgaatttgtcttagctccgtttcttc
ttttgcccagtctagattcctctcttacagctcgagtgccttctcagtcg
aaccgttcatgttgcgagctgctggcggccgcaacacctaaacatataaa
agcaatatacagcaagcagcagccacatcaagtacatggtgagagctgag
catcccactaaatcagtgactagagagctgcccactttctcatacctatt
ccaatatagttacctggagtcttgcactggagcatcgacacaaacgcagt
tcagggaattacaaattggaaagggagaaggttcaaaaataac

gaattcttatcttatattagagctataaaatatccattgtgcttcaggga
acatctgtgcattttgctctcacaataaaagagatattgaaaatcaagag
aagtggcttgctgtagacaaaacaagggaatgattaatatgaaattcagg
aaggtagacttgcccctggggctgagacatggggagggaaggcctcacag
acgttggtaatgctcaattctttaagttgaagggcaatgtgttttgtttt
attttattattttttttaagagttccatatagactctatctctactcatc
acaataaaactgacttacaaagggaaggaggggaagttgaatatggcaat
aaatagactccaggcaatgagtcatgtctcagcaggacgaagccgctggc
agcgtgagcatcactaagcttggatgacacctgttttttcacctgtgaaa
gaaagacatgccaccgctcgagtctccagtcgcccttatggcttaaaaac
tgcccagctatgtagacatgtcacgtcaaataaacaatgctgagctaatt
gtattggaccaatgatcttttaaccatgcaaaaccagaccaaacagaacc
cgtgacagttatcatctaagtatttatcacaggtcaaccagcactgtgat
ttagcctcatgttccagataactgtcatagatacccttactgtttgttga
acagacacacaggcagagatttcttcaaaagggtaataatataaagtcat
caagagggcttacaaccacggagtcagaggaaatgtctgtgaccaacatt
ccatctctgtagatggacttttcacatcctctaaatggaagcacacaatg
taatgtattcatgaggcatcttgcttcatgttcatcaaatgtgccttgaa
taaattcaggttttgcattgtacatcctcacccctattaccaaacaaaga
attacagttgtatggcatgttcatcaccaaacctcttggaaatgcttcac
agaaaacattacttcttactttccaccacagatcattcatgtcctcttct
ttgttactgtttctgtctttaagcatctcattgtttgtagtaatgagtca
ctacaacaataacatcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3388533_3389655
seq2: B6Ng01-236L21.g_66_1185 (reverse)

seq1  TTCTGATG-TATGTTTATAGTGAACCTCATTACTACAAACAATGAGGATG  49
      |||||||| |||  || ||||||  |||||||||||||||||||| ||||
seq2  TTCTGATGTTATTGTTGTAGTGA--CTCATTACTACAAACAATGA-GATG  47

seq1  CTAAAAGAACAGAAACAGTAAACAAAGAAGAGGACATGGATGATCTGTGG  99
      || |||| ||||||||||| |||||||||||||||||| |||||||||||
seq2  CTTAAAG-ACAGAAACAGT-AACAAAGAAGAGGACATGAATGATCTGTGG  95

seq1  TGGAAAGTAAGAAGTAATG-TTTCTGTGAAGCATTTCCAAGAGGTTTGGT  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAAAGTAAGAAGTAATGTTTTCTGTGAAGCATTTCCAAGAGGTTTGGT  145

seq1  GATGAACATGCCATACAACTGTAATTCTTTGTTTGGTAATAGGGGTGAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACATGCCATACAACTGTAATTCTTTGTTTGGTAATAGGGGTGAGG  195

seq1  ATGTACAATGCAAAACCTGAATTTATTCAAGGCACATTTGATGAACATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAATGCAAAACCTGAATTTATTCAAGGCACATTTGATGAACATGA  245

seq1  AGCAAGATGCCTCATGAATACATTACATTGTGTGCTTCCATTTAGAGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATGCCTCATGAATACATTACATTGTGTGCTTCCATTTAGAGGAT  295

seq1  GTGAAAAGTCCATCTACAGAGATGGAATGTTGGTCACAGACATTTCCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGTCCATCTACAGAGATGGAATGTTGGTCACAGACATTTCCTCT  345

seq1  GACTCCGTGGTTGTAAGCCCTCTTGATGACTTTATATTATTACCCTTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGTGGTTGTAAGCCCTCTTGATGACTTTATATTATTACCCTTTTG  395

seq1  AAGAAATCTCTGCCTGTGTGTCTGTTCAACAAACAGTAAGGGTATCTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTCTGCCTGTGTGTCTGTTCAACAAACAGTAAGGGTATCTATG  445

seq1  ACAGTTATCTGGAACATGAGGCTAAATCACAGTGCTGGTTGACCTGTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCTGGAACATGAGGCTAAATCACAGTGCTGGTTGACCTGTGAT  495

seq1  AAATACTTAGATGATAACTGTCACGGGTTCTGTTTGGTCTGGTTTTGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAGATGATAACTGTCACGGGTTCTGTTTGGTCTGGTTTTGCAT  545

seq1  GGTTAAAAGATCATTGGTCCAATACAATTAGCTCAGCATTGTTTATTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAGATCATTGGTCCAATACAATTAGCTCAGCATTGTTTATTTGA  595

seq1  CGTGACATGTCTACATAGCTGGGCAGTTTTTAAGCCATAAGGGCGACTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACATGTCTACATAGCTGGGCAGTTTTTAAGCCATAAGGGCGACTGG  645

seq1  AGACTCGAGCGGTGGCATGTCTTTCTTTCACAGGTGAAAAAACAGGTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGAGCGGTGGCATGTCTTTCTTTCACAGGTGAAAAAACAGGTGTC  695

seq1  ATCCAAGCTTAGTGATGCTCACGCTGCCAGCGGCTTCGTCCTGCTGAGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCTTAGTGATGCTCACGCTGCCAGCGGCTTCGTCCTGCTGAGAC  745

seq1  ATGACTCATTGCCTGGAGTCTATTTATTGCCATATTCAACTTCCCCTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCATTGCCTGGAGTCTATTTATTGCCATATTCAACTTCCCCTCCT  795

seq1  TCCCTTTGTAAGTCAGTTTTATTGTGATGAGTAGAGATAGAGTCTATATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGTAAGTCAGTTTTATTGTGATGAGTAGAGATAGAGTCTATATG  845

seq1  GAACTCTTAAAAAAAATAATAAAATAAAACAAAACACATTGCCCTTCAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTAAAAAAAATAATAAAATAAAACAAAACACATTGCCCTTCAAC  895

seq1  TTAAAGAATTGAGCATTACCAACGTCTGTGAGGCCTTCCCTCCCCATGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATTGAGCATTACCAACGTCTGTGAGGCCTTCCCTCCCCATGTC  945

seq1  TCAGCCCCAGGGGCAAGTCTACCTTCCTGAATTTCATATTAATCATTCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCAGGGGCAAGTCTACCTTCCTGAATTTCATATTAATCATTCCC  995

seq1  TTGTTTTGTCTACAGCAAGCCACTTCTCTTGATTTTCAATATCTCTTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTCTACAGCAAGCCACTTCTCTTGATTTTCAATATCTCTTTTA  1045

seq1  TTGTGAGAGCAAAATGCACAGATGTTCCCTGAAGCACAATGGATATTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAGCAAAATGCACAGATGTTCCCTGAAGCACAATGGATATTTTA  1095

seq1  TAGCTCTAATATAAGATAAGAATTC  1123
      |||||||||||||||||||||||||
seq2  TAGCTCTAATATAAGATAAGAATTC  1120


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