BAC Information

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BAC

Clone NameB6Ng01-236M11
Chromosome1 (Build37)
Map Location 173,997,637 - 174,155,601
singlet/doubletdoublet
Overlap geneNcstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1
Upstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1
Downstream geneTimm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M11.bB6Ng01-236M11.g
ACCGA047914GA047915
length1,1101,189
definitionB6Ng01-236M11.b B6Ng01-236M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,997,637 - 173,998,751)(174,154,445 - 174,155,601)
sequence
gaattccaagggccttgtacccacgagtattcatataactgcacaggaag
acaggtcatggcacaagggctgagctggcactcttcttcttgctccccac
gcccctctggcaccatattccaaccacctccaccaactggctgcaactct
tcatcccacaacactccagttcctaggcctacccctctgcctttccgtgt
caatcccgcatctgcccaagagagtcccaacttctccgagggaaagaggt
cccaggacacctccgacacccaccgccactcacatccttgctctcatttg
ggactttacttggatcctggcactgctctcgggtgaggttggtcgccttg
ccagtcaggtttgccaaggcgtactgcacaacgtaagtcgtgttggtagg
gctggagacggcgatgtagtgttgaagaggcctgtcatctgattgtaggc
cgaaggggaaggaggagttggaaggtgaggacaagtggggtgggaacaga
aagagcccagtgttggccagaagggagcacgttagaaaaagagggtccaa
acaacatcaagaaaaaggaaggaggacaggcagaaagaaagtagaggaaa
gaaaaatgaaagcaaaatgatgcttttttctctgcatagtttatcaggtg
gggatcacccttctcacagcagatgcttacccaaataggaccttaggtca
tgtttcaagatcgactgaaaccatgagttgttagctctaaccaggaaccc
atagagcagacgtgtaacctaggatcgggacatagaaaaaagaaaatgct
ccaacttgtcacaagaccaagcaaacaatgagcagagcccagttacaaga
caggaactctactcctggggctgggagatggtggccggtcgaaaggatgt
agataaagcccactcaagaactctcagaggtatcatcctcgcagcatgag
ggggcatgctaaatcccaaggttggaagttggcacggaccatagaggatg
ggggcagcctggttaacagagacagaaaggacgggcccattctttcctac
tgtctggggatcaacctggaatggaactgctgaagttggtcctcctgcag
gctccataca
atctcgagttagtcatgtttatgttggttagcattgggggtatatacctg
tatcacagcactcaaaggctgaggcaggaggatctcaggtttgagggcag
attggcccatctggaaagactgtgttttaaaaccaaacagagcaaaatag
tgtttatagtgattacacacatgttgaagtggtactttgatatattagtt
aagtacatttatatttttataattgatatattgatttaaataataaatat
atatttaattatattgatatattagattaaattattaaaatttatttctc
atgttccacttatcttaatatgggcattagagaacttagattttacatgt
ggtttgcattatatttttctctttttccatttttttctatgtgtgtgcat
gtcggtgtgtgcatatgatgtgtgttcccatagaagggcaggtgcacatg
tgttacagcacacatgagaaggtcagaggacaagggctggccttagcctt
taccttccagcttgtttgagccaaaagtctcccttgttcacagctgtgtg
tactaggctaactggtctacctgacactgtatcttctcctgcccctgcct
cccatcccccgttgggggattacagaggcttgtgctagtgcgtctagctt
ttacacgaattctagggacccaaaaacaggtgatcaggcttgtgcagcaa
gcacctaacccactgaaccattatctccagccatctcccagcccttgcat
tgtatttccattgaactactgaacagtgctattgatttataccctgctct
ctatgacactcaagggtataaaactcgttaaatccatcttcctgtcccct
cattatagaagaggcacaaagaggaaaaattcagtgtctattttgccata
tgggaagtacatgtaaacaccacgtgagtaaatgtatcaattgccttctt
cagcagtaagaacttagagtatgcagaagaaaaagcaacaggaggaagaa
ggggctcctcagcaacctcagttgttcagcctggcaataaacctacatta
attctgccacatgacattatccaatgggccactggccatttgtaagatat
ctgtcttggtgaccttcctctcctggccccagtcgcttagccactaggct
tctggaccctccctcaatggaaaatcacactgtaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173997637_173998751
seq2: B6Ng01-236M11.b_48_1157

seq1  GAATTCCAAGGGCCTTGTACCCACGAGTATTCATATAACTGCACAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGCCTTGTACCCACGAGTATTCATATAACTGCACAGGAAG  50

seq1  ACAGGTCATGGCACAAGGGCTGAGCTGGCACTCTTCTTCTTGCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCATGGCACAAGGGCTGAGCTGGCACTCTTCTTCTTGCTCCCCAC  100

seq1  GCCCCTCTGGCACCATATTCCAACCACCTCCACCAACTGGCTGCAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTGGCACCATATTCCAACCACCTCCACCAACTGGCTGCAACTCT  150

seq1  TCATCCCACAACACTCCAGTTCCTAGGCCTACCCCTCTGCCTTTCCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCACAACACTCCAGTTCCTAGGCCTACCCCTCTGCCTTTCCGTGT  200

seq1  CAATCCCGCATCTGCCCAAGAGAGTCCCAACTTCTCCGAGGGAAAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCGCATCTGCCCAAGAGAGTCCCAACTTCTCCGAGGGAAAGAGGT  250

seq1  CCCAGGACACCTCCGACACCCACCGCCACTCACATCCTTGCTCTCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACACCTCCGACACCCACCGCCACTCACATCCTTGCTCTCATTTG  300

seq1  GGACTTTACTTGGATCCTGGCACTGCTCTCGGGTGAGGTTGGTCGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTACTTGGATCCTGGCACTGCTCTCGGGTGAGGTTGGTCGCCTTG  350

seq1  CCAGTCAGGTTTGCCAAGGCGTACTGCACAACGTAAGTCGTGTTGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGGTTTGCCAAGGCGTACTGCACAACGTAAGTCGTGTTGGTAGG  400

seq1  GCTGGAGACGGCGATGTAGTGTTGAAGAGGCCTGTCATCTGATTGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGACGGCGATGTAGTGTTGAAGAGGCCTGTCATCTGATTGTAGGC  450

seq1  CGAAGGGGAAGGAGGAGTTGGAAGGTGAGGACAAGTGGGGTGGGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGGAAGGAGGAGTTGGAAGGTGAGGACAAGTGGGGTGGGAACAGA  500

seq1  AAGAGCCCAGTGTTGGCCAGAAGGGAGCACGTTAGAAAAAGAGGGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCAGTGTTGGCCAGAAGGGAGCACGTTAGAAAAAGAGGGTCCAA  550

seq1  ACAACATCAAGAAAAAGGAAGGAGGACAGGCAGAAAGAAAGTAGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCAAGAAAAAGGAAGGAGGACAGGCAGAAAGAAAGTAGAGGAAA  600

seq1  GAAAAATGAAAGCAAAATGATGCTTTTTTCTCTGCATAGTTTATCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAAAGCAAAATGATGCTTTTTTCTCTGCATAGTTTATCAGGTG  650

seq1  GGGATCACCCTTCTCACAGCAGATGCTTACCCAAATAGGACCTTAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACCCTTCTCACAGCAGATGCTTACCCAAATAGGACCTTAGGTCA  700

seq1  TGTTTCAAGATCGACTGAAACCATGAGTTGTTAGCTCTAACCAGGAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAGATCGACTGAAACCATGAGTTGTTAGCTCTAACCAGGAACCC  750

seq1  ATAGAGCAGACGTGTAACCTAGGATCGGGACATAGAAAAAAGAAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCAGACGTGTAACCTAGGATCGGGACATAGAAAAAAGAAAATGCT  800

seq1  CCAACTTGTCACAAGACCAAGCAAACAATGAGCAGAGCCCAGTTACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTCACAAGACCAAGCAAACAATGAGCAGAGCCCAGTTACAAGA  850

seq1  CAGGAACTCTACTCCTGGGGCTGGGAGATGGTGGCCGGTCGAAAGGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCTACTCCTGGGGCTGGGAGATGGTGGCCGGTCGAAAGGATGT  900

seq1  AGATAAAGCCCACTCAAGAACTCTCAGAGGTATCATCCTCGCAGGCATGA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATAAAGCCCACTCAAGAACTCTCAGAGGTATCATCCTCGCA-GCATGA  949

seq1  GGGGGCATGCTAAATCCCAAAGTTTGGGAAGTTGGCACGGACCATAGAGG  1000
      |||||||||||||||||||| |||  ||||||||||||||||||||||||
seq2  GGGGGCATGCTAAATCCCAAGGTT--GGAAGTTGGCACGGACCATAGAGG  997

seq1  ATGGGGGCAGCCTGGGTTAACAGAGACAGAAAGGAACGGGGCCCATCTTT  1050
      ||||||||||||| |||||||||||||||||||||   ||||||||  ||
seq2  ATGGGGGCAGCCT-GGTTAACAGAGACAGAAAGGA--CGGGCCCATTCTT  1044

seq1  TCTTACTGTCTGGGGATCAGCCTGG-ATGGAGCTGCTGAAGTTGGTTCCT  1099
      || |||||||||||||||| ||||| ||||| ||||||||||||| ||||
seq2  TCCTACTGTCTGGGGATCAACCTGGAATGGAACTGCTGAAGTTGG-TCCT  1093

seq1  CCTGCAAGCT-CATACA  1115
      |||||| ||| ||||||
seq2  CCTGCAGGCTCCATACA  1110

seq1: chr1_174154445_174155601
seq2: B6Ng01-236M11.g_90_1268 (reverse)

seq1  GAGA-TACAGT-TGATTTTCCATTTGAGGAGG--TCAGAGCCCTAGT-GC  45
      |||| |||||| ||||||||||||   |||||   ||||  |||||| ||
seq2  GAGATTACAGTGTGATTTTCCATTGAGGGAGGGTCCAGAAGCCTAGTGGC  50

seq1  TAAGCGACTGGGGGCA-GAGAGGAAAGTCA-CAAGACAGATATC-TACAA  92
      ||||||||||||| || |||||||| |||| ||||||||||||| |||||
seq2  TAAGCGACTGGGGCCAGGAGAGGAAGGTCACCAAGACAGATATCTTACAA  100

seq1  --TGCCAGTGG-CCATTTGATAAATGTCATGT-GCAGAATTAATGTA-GT  137
         |||||||| ||||| ||| |||||||||| |||||||||||||| ||
seq2  ATGGCCAGTGGCCCATTGGAT-AATGTCATGTGGCAGAATTAATGTAGGT  149

seq1  TTATTGCCA-GCTGA--CACTGA-GTTGCTGA-GAGCCCCCTCTTCCTCC  182
      ||||||||| |||||   ||||| |||||||| ||||||| |||||||||
seq2  TTATTGCCAGGCTGAACAACTGAGGTTGCTGAGGAGCCCCTTCTTCCTCC  199

seq1  TGTTGCTTTT--CTCTGCATACTCTAAG-TCTTACTGCTGAAGAAGGCAA  229
      ||||||||||   ||||||||||||||| |||||||||||||||||||||
seq2  TGTTGCTTTTTCTTCTGCATACTCTAAGTTCTTACTGCTGAAGAAGGCAA  249

seq1  TTGATACATTTACTCACGT-GTGTTTACATGTACTT-CCATATGGCAAAA  277
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TTGATACATTTACTCACGTGGTGTTTACATGTACTTCCCATATGGCAAAA  299

seq1  TAGACACTGAATTTTTCCTCTTTGTGCCTCTTCTATAATGAGGGGACAGG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTGAATTTTTCCTCTTTGTGCCTCTTCTATAATGAGGGGACAGG  349

seq1  AAGATGGATTTAACGAGTTTTATACCCTTGAGTGTCATAGAGAGCAGGGT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGATTTAACGAGTTTTATACCCTTGAGTGTCATAGAGAGCAGGGT  399

seq1  ATAAATCAATAGCACTGTTCAGTAGTTCAATGGAAATACAATGCAAGGGC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAATAGCACTGTTCAGTAGTTCAATGGAAATACAATGCAAGGGC  449

seq1  TGGGAGATGGCTGGAGATAATGGTTCAGTGGGTTAGGTGCTTGCTGCACA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGCTGGAGATAATGGTTCAGTGGGTTAGGTGCTTGCTGCACA  499

seq1  AGCCTGATCACCTGTTTTTGGGTCCCTAGAATTCGTGTAAAAGCTAGACG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATCACCTGTTTTTGGGTCCCTAGAATTCGTGTAAAAGCTAGACG  549

seq1  CACTAGCACAAGCCTCTGTAATCCCCCAACGGGGGATGGGAGGCAGGGGC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCACAAGCCTCTGTAATCCCCCAACGGGGGATGGGAGGCAGGGGC  599

seq1  AGGAGAAGATACAGTGTCAGGTAGACCAGTTAGCCTAGTACACACAGCTG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGATACAGTGTCAGGTAGACCAGTTAGCCTAGTACACACAGCTG  649

seq1  TGAACAAGGGAGACTTTTGGCTCAAACAAGCTGGAAGGTAAAGGCTAAGG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGGGAGACTTTTGGCTCAAACAAGCTGGAAGGTAAAGGCTAAGG  699

seq1  CCAGCCCTTGTCCTCTGACCTTCTCATGTGTGCTGTAACACATGTGCACC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTTGTCCTCTGACCTTCTCATGTGTGCTGTAACACATGTGCACC  749

seq1  TGCCCTTCTATGGGAACACACATCATATGCACACACCGACATGCACACAC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCTATGGGAACACACATCATATGCACACACCGACATGCACACAC  799

seq1  ATAGAAAAAAATGGAAAAAGAGAAAAATATAATGCAAACCACATGTAAAA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAAATGGAAAAAGAGAAAAATATAATGCAAACCACATGTAAAA  849

seq1  TCTAAGTTCTCTAATGCCCATATTAAGATAAGTGGAACATGAGAAATAAA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTCTCTAATGCCCATATTAAGATAAGTGGAACATGAGAAATAAA  899

seq1  TTTTAATAATTTAATCTAATATATCAATATAATTAAATATATATTTATTA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATTTAATCTAATATATCAATATAATTAAATATATATTTATTA  949

seq1  TTTAAATCAATATATCAATTATAAAAATATAAATGTACTTAACTAATATA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAATATATCAATTATAAAAATATAAATGTACTTAACTAATATA  999

seq1  TCAAAGTACCACTTCAACATGTGTGTAATCACTATAAACACTATTTTGCT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTACCACTTCAACATGTGTGTAATCACTATAAACACTATTTTGCT  1049

seq1  CTGTTTGGTTTTAAAACACAGTCTTTCCAGATGGGCCAATCTGCCCTCAA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTTTTAAAACACAGTCTTTCCAGATGGGCCAATCTGCCCTCAA  1099

seq1  ACCTGAGATCCTCCTGCCTCAGCCTTTGAGTGCTGTGATACAGGTATATA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGATCCTCCTGCCTCAGCCTTTGAGTGCTGTGATACAGGTATATA  1149

seq1  CCCCCAATGCTAACCAACATAAACATGACT  1157
      ||||||||||||||||||||||||||||||
seq2  CCCCCAATGCTAACCAACATAAACATGACT  1179