BAC Information

Click to search

BAC

Clone NameB6Ng01-237E13
Chromosome1 (Build37)
Map Location 137,053,475 - 137,180,694
singlet/doubletdoublet
Overlap geneGpr37l1, LOC100043064, Elf3, Rnpep
Upstream geneChi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a
Downstream geneTimm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237E13.bB6Ng01-237E13.g
ACCGA048286GA048287
length1,1871,144
definitionB6Ng01-237E13.b B6Ng01-237E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,179,499 - 137,180,694)(137,053,475 - 137,054,619)
sequence
gaattcctcggagggcggggcgcatggtggcgcgtcgcctcgaggcggag
cctgccaagacccgaggagcgaccgaccttcctggcgggtgagcaaccgc
tcaggagccatggagagcggcggaccaggcaactacagcgcggccgcccg
gcggccactgcactcggcccaagccgtggacgtggcctcggcctccagct
tccgcgccttcgagatcctgcacctgcacctggacctgcgggccgagttc
gggcctccgggcccgggtccgggaagccgcggattgagcggcacggcgac
gctggagctgcgttgtttgcttcccgagggcgcctcggagctgcggctcg
actcgcacagctgcttggaggtgacggcggcgacgctgcgacggggacag
ccgggagaccagcaggcgccggcagagcccgtgcctttccacacacagcc
cttctcgcactatggccaggccctgtgcgtggccttccggcagccctgcg
gtgccgccgatcgcttcgagctggagctcacctaccgcgtcggggaggga
cccggggtgagtgcgcgcggggcgcccgggccaccggcctctctcagccc
ccttggccagcctgctgctcctaagcagcccagagatggagagcaggaaa
tctggctctgcttccgcagcttccgcgggagatccccgtgcccctactct
cttccccagaagccggctttggattcctgccccgtgctccccattcctgg
gctcgaacctctccagccggtgctttgttcctcctacccgtccttccttc
ctgccttcctggtctctgtcgggattatttgccttagattgccctgcctc
acctctgacacacacgtgctggaccgacttgtccgctagcctctgtcttt
tcagatgagaaacttgcttcgcaactttgctttttgttttgttttataat
tctccttgctggagcctggacagtgttggttaattagcttggatgctgac
agggtcctttcatgtgctagcaagcccttttggttgcacagttaaaacag
ccgagaagcatttttacttccttctttgaaatcctgcctattggacttaa
agatcgagccaaaatggattggttaattgagtactctgaactttatatat
attcagccttccataaccgttgcctctaagtcttaag
gaattcctaccctgcctgtctagctggagctcacagcctcagttcttgtg
ggccctccttgatccaatgtgaatccaaccacagctagttttatactgac
cctcgatctcttgggtccccctcccccactccctgttctgcctccccttt
gcctggaaatagagactggaatgttccgtgtagaataagcaatctcttca
ccctgcatctgcagtaagaaacagccacatctgtccttggtttgtgagag
gatttgggtgaggccactactcagccgtgaatatatccagcctggaagag
gatctcttattgctggggggatttgaagacagggtctggagatttagctc
attgacagagcgctgatggagcatacaatagaccaggccctggcttccat
tgactgcatgggggaaaaagatttgaggaaaaactggatggtgtttgctg
cttctcaggagctttccaaccccttacaaggataagatgcaccccctagg
ggctggagagatggctcagtggttaagagcactgatgcttttccagaggt
cctgagttcaattcctagcaaccacatggtggctcacaactgtctgtaac
aggatccaataccctctttggtgtgtctgaagacagcaacaatgtactca
catatataaaataaatctttaaaaaaaaaaaaaatgtgacccttagttgg
gaaggaggatgggcccaggctctgtcttttgccttgcctgcttcaaggaa
gtcgctgtgcttctatgcctatatctggagaggaccattgttctcagcca
ttgaggatgttgcagcactgagctgccgcttgggtcctgtgttctccaga
tgcgatttgatgatgagcctgttatcactgcatgcaaaatcagtaccctg
cacagtgaattcatacaacaggcatgcagcgggggctaaacaacctgttc
ttgggatagggaataactatggatagtatgcatataaacctacatgtata
aacacatcatgttgggttcctctgagggcaaaaggtagatgagttaatat
ctgggcagggcctggagaaggtggctcagagcatgttacctgctctcaga
gtacacatgattggctctaggacatgtgtcagtgaccttctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_137179499_137180694
seq2: B6Ng01-237E13.b_50_1236 (reverse)

seq1  CTTAAGACTTAAGAGCCAACCGTTATTGAGAAGGCTGAATTATTATAAAG  50
      |||||||||| |||| |||| |||||   |||||||||||   |||||||
seq2  CTTAAGACTT-AGAGGCAACGGTTAT--GGAAGGCTGAATATATATAAAG  47

seq1  TCTAGAGTACTCTAATTACACATTCCCATTTTTGCTCGGATTCTTTTAAG  100
      |  ||||||||| |||||  || | ||||||| |||| |||   ||||||
seq2  TTCAGAGTACTC-AATTAACCAAT-CCATTTTGGCTC-GAT--CTTTAAG  92

seq1  T-CAATA-GCAGGATTTCAAAGGAGGAAGTAAAAATGCTTCTCGGGCTGT  148
      | ||||| |||||||||||||| |||||||||||||||||||| ||||||
seq2  TCCAATAGGCAGGATTTCAAAGAAGGAAGTAAAAATGCTTCTC-GGCTGT  141

seq1  TTTAACCTGTGCAACCAAAAGGGCTTGCTAGCACATGAAAGGACCCTGTC  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAA-CTGTGCAACCAAAAGGGCTTGCTAGCACATGAAAGGACCCTGTC  190

seq1  AGCATCC-AGCTAATTAACCAACACTGTCCAGGCTCCAGCAAGGAGAATT  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAAGCTAATTAACCAACACTGTCCAGGCTCCAGCAAGGAGAATT  240

seq1  ATAAAACAAAACAAAAAGCAAAGTTTGCGAAGCAAGTTTCTCATCCTGAA  297
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  ATAAAACAAAACAAAAAGCAAAG-TTGCGAAGCAAGTTTCTCAT-CTGAA  288

seq1  AAGACAGAGGCTAGCGGACAAGTCGGTCCAGCACGTGTGTGTCAGAGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGGCTAGCGGACAAGTCGGTCCAGCACGTGTGTGTCAGAGGTG  338

seq1  AGGCAGGGCAATCTAAGGCAAATAATCCCGACAGAGACCAGGAAGGCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCAATCTAAGGCAAATAATCCCGACAGAGACCAGGAAGGCAGG  388

seq1  AAGGAAGGACGGGTAGGAGGAACAAAGCACCGGCTGGAGAGGTTCGAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGACGGGTAGGAGGAACAAAGCACCGGCTGGAGAGGTTCGAGCC  438

seq1  CAGGAATGGGGAGCACGGGGCAGGAATCCAAAGCCGGCTTCTGGGGAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGGGGAGCACGGGGCAGGAATCCAAAGCCGGCTTCTGGGGAAGA  488

seq1  GAGTAGGGGCACGGGGATCTCCCGCGGAAGCTGCGGAAGCAGAGCCAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGGCACGGGGATCTCCCGCGGAAGCTGCGGAAGCAGAGCCAGAT  538

seq1  TTCCTGCTCTCCATCTCTGGGCTGCTTAGGAGCAGCAGGCTGGCCAAGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTCTCCATCTCTGGGCTGCTTAGGAGCAGCAGGCTGGCCAAGGG  588

seq1  GGCTGAGAGAGGCCGGTGGCCCGGGCGCCCCGCGCGCACTCACCCCGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAGAGGCCGGTGGCCCGGGCGCCCCGCGCGCACTCACCCCGGGT  638

seq1  CCCTCCCCGACGCGGTAGGTGAGCTCCAGCTCGAAGCGATCGGCGGCACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCGACGCGGTAGGTGAGCTCCAGCTCGAAGCGATCGGCGGCACC  688

seq1  GCAGGGCTGCCGGAAGGCCACGCACAGGGCCTGGCCATAGTGCGAGAAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTGCCGGAAGGCCACGCACAGGGCCTGGCCATAGTGCGAGAAGG  738

seq1  GCTGTGTGTGGAAAGGCACGGGCTCTGCCGGCGCCTGCTGGTCTCCCGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGGAAAGGCACGGGCTCTGCCGGCGCCTGCTGGTCTCCCGGC  788

seq1  TGTCCCCGTCGCAGCGTCGCCGCCGTCACCTCCAAGCAGCTGTGCGAGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGTCGCAGCGTCGCCGCCGTCACCTCCAAGCAGCTGTGCGAGTC  838

seq1  GAGCCGCAGCTCCGAGGCGCCCTCGGGAAGCAAACAACGCAGCTCCAGCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCAGCTCCGAGGCGCCCTCGGGAAGCAAACAACGCAGCTCCAGCG  888

seq1  TCGCCGTGCCGCTCAATCCGCGGCTTCCCGGACCCGGGCCCGGAGGCCCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGTGCCGCTCAATCCGCGGCTTCCCGGACCCGGGCCCGGAGGCCCG  938

seq1  AACTCGGCCCGCAGGTCCAGGTGCAGGTGCAGGATCTCGAAGGCGCGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGCCCGCAGGTCCAGGTGCAGGTGCAGGATCTCGAAGGCGCGGAA  988

seq1  GCTGGAGGCCGAGGCCACGTCCACGGCTTGGGCCGAGTGCAGTGGCCGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCCGAGGCCACGTCCACGGCTTGGGCCGAGTGCAGTGGCCGCC  1038

seq1  GGGCGGCCGCGCTGTAGTTGCCTGGTCCGCCGCTCTCCATGGCTCCTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCCGCGCTGTAGTTGCCTGGTCCGCCGCTCTCCATGGCTCCTGAG  1088

seq1  CGGTTGCTCACCCGCCAGGAAGGTCGGTCGCTCCTCGGGTCTTGGCAGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCTCACCCGCCAGGAAGGTCGGTCGCTCCTCGGGTCTTGGCAGGC  1138

seq1  TCCGCCTCGAGGCGACGCGCCACCATGCGCCCCGCCCTCCGAGGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTCGAGGCGACGCGCCACCATGCGCCCCGCCCTCCGAGGAATTC  1187

seq1: chr1_137053475_137054619
seq2: B6Ng01-237E13.g_68_1211

seq1  GAATTCCTACCCTGCCTGTCTAGCTGGAGCTCACAGCCTCAGTTCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCCTGCCTGTCTAGCTGGAGCTCACAGCCTCAGTTCTTGTG  50

seq1  GGCCCTCCTTGATCCAATGTGAATCCAACCACAGCTAGTTTTATACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCTTGATCCAATGTGAATCCAACCACAGCTAGTTTTATACTGAC  100

seq1  CCTCGATCTCTTGGGTCCCCCTCCCCCACTCCCTGTTCTGCCTCCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGATCTCTTGGGTCCCCCTCCCCCACTCCCTGTTCTGCCTCCCCTTT  150

seq1  GCCTGGAAATAGAGACTGGAATGTTCCGTGTAGAATAAGCAATCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAATAGAGACTGGAATGTTCCGTGTAGAATAAGCAATCTCTTCA  200

seq1  CCCTGCATCTGCAGTAAGAAACAGCCACATCTGTCCTTGGTTTGTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCTGCAGTAAGAAACAGCCACATCTGTCCTTGGTTTGTGAGAG  250

seq1  GATTTGGGTGAGGCCACTACTCAGCCGTGAATATATCCAGCCTGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGTGAGGCCACTACTCAGCCGTGAATATATCCAGCCTGGAAGAG  300

seq1  GATCTCTTATTGCTGGGGGGATTTGAAGACAGGGTCTGGAGATTTAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTATTGCTGGGGGGATTTGAAGACAGGGTCTGGAGATTTAGCTC  350

seq1  ATTGACAGAGCGCTGATGGAGCATACAATAGACCAGGCCCTGGCTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGAGCGCTGATGGAGCATACAATAGACCAGGCCCTGGCTTCCAT  400

seq1  TGACTGCATGGGGGAAAAAGATTTGAGGAAAAACTGGATGGTGTTTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATGGGGGAAAAAGATTTGAGGAAAAACTGGATGGTGTTTGCTG  450

seq1  CTTCTCAGGAGCTTTCCAACCCCTTACAAGGATAAGATGCACCCCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGAGCTTTCCAACCCCTTACAAGGATAAGATGCACCCCCTAGG  500

seq1  GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGATGCTTTTCCAGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGATGCTTTTCCAGAGGT  550

seq1  CCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACTGTCTGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACTGTCTGTAAC  600

seq1  AGGATCCAATACCCTCTTTGGTGTGTCTGAAGACAGCAACAATGTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAATACCCTCTTTGGTGTGTCTGAAGACAGCAACAATGTACTCA  650

seq1  CATATATAAAATAAATCTTTAAAAAAAAAAAAAATGTGACCCTTAGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAAATAAATCTTTAAAAAAAAAAAAAATGTGACCCTTAGTTGG  700

seq1  GAAGGAGGATGGGCCCAGGCTCTGTCTTTTGCCTTGCCTGCTTCAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGATGGGCCCAGGCTCTGTCTTTTGCCTTGCCTGCTTCAAGGAA  750

seq1  GTCGCTGTGCTTCTATGCCTATATCTGGAGAGGACCATTGTTCTCAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGTGCTTCTATGCCTATATCTGGAGAGGACCATTGTTCTCAGCCA  800

seq1  TTGAGGATGTTGCAGCACTGAGCTGCCGCTTGGGTCCTGTGTTCTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATGTTGCAGCACTGAGCTGCCGCTTGGGTCCTGTGTTCTCCAGA  850

seq1  TGCGATTTGATGATGAGCCTGTTATCACTGCATGCAAAATCAGTACCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATTTGATGATGAGCCTGTTATCACTGCATGCAAAATCAGTACCCTG  900

seq1  CACAGTGAATTCATACAACAGGCATGCAGCGGGGGCTAAACAACCTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAATTCATACAACAGGCATGCAGCGGGGGCTAAACAACCTGTTC  950

seq1  TT-GGATAGGGAATAAACTATGGATAGTATGCATATAAACCTACATGTAT  999
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGGATAGGGAAT-AACTATGGATAGTATGCATATAAACCTACATGTAT  999

seq1  AAACAACATCATGGTTGGGTCCTCTGAGGGCAAAA-GTAGATGAGTTAAT  1048
      |||| |||||||| | || |||||||||||||||| ||||||||||||||
seq2  AAAC-ACATCATGTTGGGTTCCTCTGAGGGCAAAAGGTAGATGAGTTAAT  1048

seq1  ATCTGGCCAAGGGGCTGGAG-AGGTGGCTCAGAGCATGT--ACTGCTCTT  1095
      |||||| | |||| |||||| ||||||||||||||||||   ||||||| 
seq2  ATCTGGGC-AGGGCCTGGAGAAGGTGGCTCAGAGCATGTTACCTGCTCT-  1096

seq1  CCAGAGGACACAGGTTTGGCTCCTAGGACATGTGTCAGGTGA-CTTCTGA  1144
       ||||| ||||| | |||||| ||||||||||||||| |||| |||||||
seq2  -CAGAGTACACATGATTGGCT-CTAGGACATGTGTCA-GTGACCTTCTGA  1143

seq1  C  1145
      |
seq2  C  1144