BAC Information

Click to search

BAC

Clone NameB6Ng01-237J16
Chromosome1 (Build37)
Map Location 149,840,892 - 149,933,352
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J16.bB6Ng01-237J16.g
ACCGA048514GA048515
length983951
definitionB6Ng01-237J16.b B6Ng01-237J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,932,646 - 149,933,352)(149,840,892 - 149,841,843)
sequence
gaattccaaagctttttatttccagaattctctcagtctgtatgttgttt
attttatttccattttatgtcttgaatagttgtatttgtttcctttacta
cttgtgtttgtttattttttatttattacttatttttgttcaggaaatta
atttttttcaattgctttttttgttgttttgatggttttttgcttttgtg
ttttcttgtttgtttgtttgtttttcattttctgtatttctttttatttc
ctcttgaggagttctatcatctaaacagtgttggctttaaggtctttctc
ctgtgtttcaactactttgaaatactcatgccctgctgtggttggacagt
tgggttctattgaagaattattgccctgagtactattgactgtgttttta
tgctggttttaaactatcttgttaccatattataaaagtctgtgttgatt
tctgtatttgtctttgttggactgatgcttgttcttttttctctaattct
tctcaagattttcagaacacgtgatgacagggtgtttaatatttcacccc
cttctcctggggtttgtctactattgttggagtttgtgatagaagaataa
tttgaggccaggtataaagtaatgagtcaggattgggaagttagattagg
atgatgcactgggcagggaatgctgacacaggcattcttctgctgagcta
gaaatgaatcagatctgagacaaaaaagagaagagacagtttgctggcac
catagtggttttctgagaggtgtggactctgggatatcaggaggtcacta
ccagagattagctgtgacttgtctaccaagaggggaagaagtaagacggg
aattgtctgtgcagcagagcatatgactgcaggaggtgttctgtgctaga
acaagactgagagattggatttggagggaaatagggagttgtgagcatct
tcatttagttttgcatagctggtgcattttcag

gaattccaggaccaagaagtgggagtgggtgggttgtggagcaggggggg
agaggttataggagactttcaggatagcatttgaaatgtaaatgaagaaa
atatctaataaaagatatatgtgtggtctagtataggtattaatgtcata
tttacatatcatttatgacatttatacactcaattaatataaaatttcat
cacaatcatgttttttatctgtgtctgtatagtgacactgaatcaatcag
aaaccatcaaataagcttttaaaaaaatcaataaaattgtcattactaaa
agattgtcataataaatctaccaaacattacaggagcaaatatttattaa
gaacttattacatcccaaggtttatgttagacgctttggaaaaaaaatag
aagactaagtttgtctaaattatattaatactatgcacacctgttaacta
tctcttccagagcacaaaacaacaacattattttcatattggaataaatg
cattcatttggataaagaaacaatcatgagaatgtgagtgtgtctctaga
aaatgaaactataggggtagggggcataaaaatctcttttatggagaaag
aggaaggaagttggaaaacaataggctaaatgagacagcaaagggacctg
gaagtggttgaaattgaaatatatactgctcgggggagcacagtatttga
agaaataaatcacacacagaatctaataaaatgaagagtatatgaaaatc
ttgaggcccaccatgacatagagcctatgcccagcactgcatggatggcc
tggatagtcaggaatggggaccagagactgagatctaaggtagaatggaa
catgactggtctaaataaacaaatagacagacagacagactgaccgaccg
acgacagatagatgatagatggatggatggatggatagatagatagatag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149932646_149933352
seq2: B6Ng01-237J16.b_47_753 (reverse)

seq1  TCATTTCTAGCTCAGCAGAAGAATGCCTGTGTCAGCATTCCCTGCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAGCTCAGCAGAAGAATGCCTGTGTCAGCATTCCCTGCCCAGT  50

seq1  GCATCATCCTAATCTAACTTCCCAATCCTGACTCATTACTTTATACCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCCTAATCTAACTTCCCAATCCTGACTCATTACTTTATACCTGG  100

seq1  CCTCAAATTATTCTTCTATCACAAACTCCAACAATAGTAGACAAACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATTATTCTTCTATCACAAACTCCAACAATAGTAGACAAACCCCA  150

seq1  GGAGAAGGGGGTGAAATATTAAACACCCTGTCATCACGTGTTCTGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGGGGTGAAATATTAAACACCCTGTCATCACGTGTTCTGAAAAT  200

seq1  CTTGAGAAGAATTAGAGAAAAAAGAACAAGCATCAGTCCAACAAAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGAATTAGAGAAAAAAGAACAAGCATCAGTCCAACAAAGACAA  250

seq1  ATACAGAAATCAACACAGACTTTTATAATATGGTAACAAGATAGTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAATCAACACAGACTTTTATAATATGGTAACAAGATAGTTTAAA  300

seq1  ACCAGCATAAAAACACAGTCAATAGTACTCAGGGCAATAATTCTTCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATAAAAACACAGTCAATAGTACTCAGGGCAATAATTCTTCAATA  350

seq1  GAACCCAACTGTCCAACCACAGCAGGGCATGAGTATTTCAAAGTAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAACTGTCCAACCACAGCAGGGCATGAGTATTTCAAAGTAGTTGA  400

seq1  AACACAGGAGAAAGACCTTAAAGCCAACACTGTTTAGATGATAGAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGAGAAAGACCTTAAAGCCAACACTGTTTAGATGATAGAACTCC  450

seq1  TCAAGAGGAAATAAAAAGAAATACAGAAAATGAAAAACAAACAAACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGAAATAAAAAGAAATACAGAAAATGAAAAACAAACAAACAAAC  500

seq1  AAGAAAACACAAAAGCAAAAAACCATCAAAACAACAAAAAAAGCAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACACAAAAGCAAAAAACCATCAAAACAACAAAAAAAGCAATTGA  550

seq1  AAAAAATTAATTTCCTGAACAAAAATAAGTAATAAATAAAAAATAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAATTTCCTGAACAAAAATAAGTAATAAATAAAAAATAAACAA  600

seq1  ACACAAGTAGTAAAGGAAACAAATACAACTATTCAAGACATAAAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTAGTAAAGGAAACAAATACAACTATTCAAGACATAAAATGGAA  650

seq1  ATAAAATAAACAACATACAGACTGAGAGAATTCTGGAAATAAAAAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAACAACATACAGACTGAGAGAATTCTGGAAATAAAAAGCTTT  700

seq1  GGAATTC  707
      |||||||
seq2  GGAATTC  707


seq1: chr1_149840892_149841843
seq2: B6Ng01-237J16.g_65_1015

seq1  GAATTCCAGGACCAAGAAGTGGGAGTGGGTGGGTTGTGGAGCAGGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCAAGAAGTGGGAGTGGGTGGGTTGTGGAGCAGGGGGGG  50

seq1  AGAGGTTATAGGAGACTTTCAGGATAGCATTTGAAATGTAAATGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTATAGGAGACTTTCAGGATAGCATTTGAAATGTAAATGAAGAAA  100

seq1  ATATCTAATAAAAGATATATGTGTGGTCTAGTATAGGTATTAATGTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATAAAAGATATATGTGTGGTCTAGTATAGGTATTAATGTCATA  150

seq1  TTTACATATCATTTATGACATTTATACACTCAATTAATATAAAATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATCATTTATGACATTTATACACTCAATTAATATAAAATTTCAT  200

seq1  CACAATCATGTTTTTTATCTGTGTCTGTATAGTGACACTGAATCAATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCATGTTTTTTATCTGTGTCTGTATAGTGACACTGAATCAATCAG  250

seq1  AAACCATCAAATAAGCTTTTAAAAAAATCAATAAAATTGTCATTACTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCAAATAAGCTTTTAAAAAAATCAATAAAATTGTCATTACTAAA  300

seq1  AGATTGTCATAATAAATCTACCAAACATTACAGGAGCAAATATTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCATAATAAATCTACCAAACATTACAGGAGCAAATATTTATTAA  350

seq1  GAACTTATTACATCCCAAGGTTTATGTTAGACGCTTTGGAAAAAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATTACATCCCAAGGTTTATGTTAGACGCTTTGGAAAAAAAATAG  400

seq1  AAGACTAAGTTTGTCTAAATTATATTAATACTATGCACACCTGTTAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAGTTTGTCTAAATTATATTAATACTATGCACACCTGTTAACTA  450

seq1  TCTCTTCCAGAGCACAAAACAACAACATTATTTTCATATTGGAATAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAGAGCACAAAACAACAACATTATTTTCATATTGGAATAAATG  500

seq1  CATTCATTTGGATAAAGAAACAATCATGAGAATGTGAGTGTGTCTCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTGGATAAAGAAACAATCATGAGAATGTGAGTGTGTCTCTAGA  550

seq1  AAATGAAACTATAGGGGTAGGGGGCATAAAAATCTCTTTTATGGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACTATAGGGGTAGGGGGCATAAAAATCTCTTTTATGGAGAAAG  600

seq1  AGGAAGGAAGTTGGAAAACAATAGGCTAAATGAGACAGCAAAGGGACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGTTGGAAAACAATAGGCTAAATGAGACAGCAAAGGGACCTG  650

seq1  GAAGTGGTTGAAATTGAAATATATACTGCTCGGGGGAGCACAGTATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTTGAAATTGAAATATATACTGCTCGGGGGAGCACAGTATTTGA  700

seq1  AGAAATAAATCACACACAGAATCTAATAAAATGAAGAGTATATGAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATCACACACAGAATCTAATAAAATGAAGAGTATATGAAAATC  750

seq1  TTGAGGCCCACCATGACATAGAGCCTATGCCCAGCACTGCATGGATGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCCACCATGACATAGAGCCTATGCCCAGCACTGCATGGATGGCC  800

seq1  TGGATAGTCAGGAATGGGACCCAGAGACTGAGATCTAAGGTAGAATGGAA  850
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGGATAGTCAGGAATGGGGACCAGAGACTGAGATCTAAGGTAGAATGGAA  850

seq1  CATGACTGGTCTAAATAAACAAATAGACAGACAGACAGACAGACAGACAG  900
      |||||||||||||||||||||||||||||||||||||||| ||| ||| |
seq2  CATGACTGGTCTAAATAAACAAATAGACAGACAGACAGACTGACCGACCG  900

seq1  ACAGACAGATAGATGATAGATGGATGGATGGATGGATAGATAGATAGATA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-GACAGATAGATGATAGATGGATGGATGGATGGATAGATAGATAGATA  949

seq1  GA  952
      ||
seq2  GA  951


| Home | SequenceCutter | Blast | Download |