BAC Information

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BAC

Clone NameB6Ng01-237K06
Chromosome1 (Build37)
Map Location 156,770,822 - 156,894,074
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237K06.bB6Ng01-237K06.g
ACCGA048542GA048543
length9931,158
definitionB6Ng01-237K06.b B6Ng01-237K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,770,822 - 156,771,431)(156,892,927 - 156,894,074)
sequence
gaattcagagaagaccacacgtttctaaagcaagagaaatatcatggatt
aagagtagaaagtggattgttatactgttatttaaacatagttacctttg
gctgaaatgtggttttattttcttttttatttcatttatttattttttct
tttattgaaaatagatttttttcatacactatattctgattaggtttctc
ctcccctagtatctcccagttctccctctacgttcccatccagatccaca
ctccttctgtcttgcctcagaaaacaggcatctaaggaatgataaaataa
gatagatacacacttaagaatctcataaaaacataaaaccagaagccata
atatagatgcaaaaggcctgtaaggggcaggggaatccctgacacaacat
tataaacagagaacttccaacgatgctattgagtgcattttctgttggcc
atcgactgggcatggagccttccctttaagagtattttgtttcctcagtg
agactcccttggagaaaactaagttttcatttgcaaaaggttatcagtta
aaggaataagtcacacctaatcaagttgttggtcaaaggcatcccatgag
aatcctcaaacaatccacactattgctaaggctgctcaccacaaactggc
aataaggccctattgctaaagacagtatctgcacaactcattgaacacag
acaagttgagttggtgtctacctgtgggagcaaccaaccaatatatgatt
tgacttgaggcccactccacaaaatgaaacccatacccggacattgcttg
agtgactgggaaccagagacagatagcccagggaactggggtaaaccaaa
tactactggtccactaaaggtatgtagcaataaaatgactcctaatgaca
ttctgccacactcataggtaagtgtcttgctcagtcatcatcagtgaagc
ttcctcctgcagcagacaggagcatacagagaccacagccaga
gaattcaggacctctggaagagcagtcagtgctcgtaaccactgagccat
ctctccagcccccaagaacataaattcttttttttttttttttgagtttt
tctggacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaa
gttctgggattacaggtgtaccactgcctggcgaacataaattcttaaag
atagacctaaaggtaaggggaggctgaggttgccggctagatccctggca
atgtgtttaaagtgagtgttttgtatagatccacaacttgtgatttggtt
taaacattttcaactctcatggctttttcaaatccgtacaaattccgtga
gaatgttggatcttcatcttttcctgagctagcttgacacagtacagtgc
tgtctcatgttgctgggccacagcgatgagctctgactcccacatagcca
cttgatctcaaggggaacaattaacagtctagtgtgctgggctgctaagt
gtggtgtttgctaggctctttggatgaagcacattttcagcatacaatgt
tttcaacttaggatgagttaactagactctatccgcatcataagtgatgg
agcatctgcatataattatatatttcactctgtgaagtgatgaaccgggc
ccttggaccttgctaaagtgttgtttacattttacacggctagaactgtg
taatattcatctctgcctcacaaaaccccaggtcagggggaactgcgagt
gtcactactgtccaatccactgactccacagctttaggccgtgacccttc
tttttcttttccggactgatatcacattcagaaaacacatgtttgcatag
ctctcatgccttttttagtgttctcttagtctgctttggtagtgtgctgt
atgtctagtgcaagctgtccttgaactggtgccgctgcctcatctttcca
tgtgttggattacagacatgggtcaccacgatcccactttgtcatagtct
catgttgtgtttgaatgcctggaatctgtctggtgtctttctcatgacta
gcacaagcctgcaatcataagaaagtgttacagaaattgaacaatgcttc
tctcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156770822_156771431
seq2: B6Ng01-237K06.b_39_648

seq1  GAATTCAGAGAAGACCACACGTTTCTAAAGCAAGAGAAATATCATGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGACCACACGTTTCTAAAGCAAGAGAAATATCATGGATT  50

seq1  AAGAGTAGAAAGTGGATTGTTATACTGTTATTTAAACATAGTTACCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGAAAGTGGATTGTTATACTGTTATTTAAACATAGTTACCTTTG  100

seq1  GCTGAAATGTGGTTTTATTTTCTTTTTTATTTCATTTATTTATTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATGTGGTTTTATTTTCTTTTTTATTTCATTTATTTATTTTTTCT  150

seq1  TTTATTGAAAATAGATTTTTTTCATACACTATATTCTGATTAGGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAAATAGATTTTTTTCATACACTATATTCTGATTAGGTTTCTC  200

seq1  CTCCCCTAGTATCTCCCAGTTCTCCCTCTACGTTCCCATCCAGATCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTAGTATCTCCCAGTTCTCCCTCTACGTTCCCATCCAGATCCACA  250

seq1  CTCCTTCTGTCTTGCCTCAGAAAACAGGCATCTAAGGAATGATAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGTCTTGCCTCAGAAAACAGGCATCTAAGGAATGATAAAATAA  300

seq1  GATAGATACACACTTAAGAATCTCATAAAAACATAAAACCAGAAGCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATACACACTTAAGAATCTCATAAAAACATAAAACCAGAAGCCATA  350

seq1  ATATAGATGCAAAAGGCCTGTAAGGGGCAGGGGAATCCCTGACACAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGCAAAAGGCCTGTAAGGGGCAGGGGAATCCCTGACACAACAT  400

seq1  TATAAACAGAGAACTTCCAACGATGCTATTGAGTGCATTTTCTGTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAGAGAACTTCCAACGATGCTATTGAGTGCATTTTCTGTTGGCC  450

seq1  ATCGACTGGGCATGGAGCCTTCCCTTTAAGAGTATTTTGTTTCCTCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTGGGCATGGAGCCTTCCCTTTAAGAGTATTTTGTTTCCTCAGTG  500

seq1  AGACTCCCTTGGAGAAAACTAAGTTTTCATTTGCAAAAGGTTATCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCTTGGAGAAAACTAAGTTTTCATTTGCAAAAGGTTATCAGTTA  550

seq1  AAGGAATAAGTCACACCTAATCAAGTTGTTGGTCAAAGGCATCCCATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAAGTCACACCTAATCAAGTTGTTGGTCAAAGGCATCCCATGAG  600

seq1  AATCCTCAAA  610
      ||||||||||
seq2  AATCCTCAAA  610

seq1: chr1_156892927_156894074
seq2: B6Ng01-237K06.g_64_1221 (reverse)

seq1  TGCTGAGAG-AGCATTTTGTCATTTCTGTGACA--TTCTTATGAATTGCA  47
      ||||||||| |||||| |   |||||||| |||  |||||||| ||||||
seq2  TGCTGAGAGAAGCATTGTTCAATTTCTGTAACACTTTCTTATG-ATTGCA  49

seq1  -GCTTGTGCCTAGTCATGAG-AAGACACCAGACAGA-TCCAGGGGCATTC  94
       ||||||| ||||||||||| ||||||||||||||| ||||  |||||||
seq2  GGCTTGTG-CTAGTCATGAGAAAGACACCAGACAGATTCCA--GGCATTC  96

seq1  -AACACAACATGAGACCTATGACAAAGT-GGATCGTGGTGACCCATGTCT  142
       |||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  AAACACAACATGAGA-CTATGACAAAGTGGGATCGTGGTGACCCATGTCT  145

seq1  GTAATCCCACACATGGAAAGATGAGGCAGCGGCACCAGTTCAAGGACAGC  192
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCAACACATGGAAAGATGAGGCAGCGGCACCAGTTCAAGGACAGC  195

seq1  CTGCACTAGACATACAGCACAACTA-CAAAGCAGACT-AGAGAACACT-A  239
       ||||||||||||||||||| |||| ||||||||||| |||||||||| |
seq2  TTGCACTAGACATACAGCAC-ACTACCAAAGCAGACTAAGAGAACACTAA  244

seq1  AAAAGGCATGAGAGCTATGC-AACATGTG-TTTCTGAATGTGATATCAGT  287
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  AAAAGGCATGAGAGCTATGCAAACATGTGTTTTCTGAATGTGATATCAGT  294

seq1  CCGGAAA--GAAAAGAAGGGTCACGGCCT-AAGCTGTGGAGTCAGTGGAT  334
      |||||||   ||||||||||||||||||| ||||||||||||||||||||
seq2  CCGGAAAAGAAAAAGAAGGGTCACGGCCTAAAGCTGTGGAGTCAGTGGAT  344

seq1  TGGACAGTAGTGACACTCGCAGTTCCCCCTGACCTGGGGTTTTGTGAGGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTAGTGACACTCGCAGTTCCCCCTGACCTGGGGTTTTGTGAGGC  394

seq1  AGAGATGAATATTACACAGTTCTAGCCGTGTAAAATGTAAACAACACTTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAATATTACACAGTTCTAGCCGTGTAAAATGTAAACAACACTTT  444

seq1  AGCAAGGTCCAAGGGCCCGGTTCATCACTTCACAGAGTGAAATATATAAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTCCAAGGGCCCGGTTCATCACTTCACAGAGTGAAATATATAAT  494

seq1  TATATGCAGATGCTCCATCACTTATGATGCGGATAGAGTCTAGTTAACTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGATGCTCCATCACTTATGATGCGGATAGAGTCTAGTTAACTC  544

seq1  ATCCTAAGTTGAAAACATTGTATGCTGAAAATGTGCTTCATCCAAAGAGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGTTGAAAACATTGTATGCTGAAAATGTGCTTCATCCAAAGAGC  594

seq1  CTAGCAAACACCACACTTAGCAGCCCAGCACACTAGACTGTTAATTGTTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAACACCACACTTAGCAGCCCAGCACACTAGACTGTTAATTGTTC  644

seq1  CCCTTGAGATCAAGTGGCTATGTGGGAGTCAGAGCTCATCGCTGTGGCCC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAGATCAAGTGGCTATGTGGGAGTCAGAGCTCATCGCTGTGGCCC  694

seq1  AGCAACATGAGACAGCACTGTACTGTGTCAAGCTAGCTCAGGAAAAGATG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGAGACAGCACTGTACTGTGTCAAGCTAGCTCAGGAAAAGATG  744

seq1  AAGATCCAACATTCTCACGGAATTTGTACGGATTTGAAAAAGCCATGAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCAACATTCTCACGGAATTTGTACGGATTTGAAAAAGCCATGAGA  794

seq1  GTTGAAAATGTTTAAACCAAATCACAAGTTGTGGATCTATACAAAACACT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAATGTTTAAACCAAATCACAAGTTGTGGATCTATACAAAACACT  844

seq1  CACTTTAAACACATTGCCAGGGATCTAGCCGGCAACCTCAGCCTCCCCTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAACACATTGCCAGGGATCTAGCCGGCAACCTCAGCCTCCCCTT  894

seq1  ACCTTTAGGTCTATCTTTAAGAATTTATGTTCGCCAGGCAGTGGTACACC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGGTCTATCTTTAAGAATTTATGTTCGCCAGGCAGTGGTACACC  944

seq1  TGTAATCCCAGAACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCCAGAACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAG  994

seq1  GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  1044

seq1  AAACCCTGTCCAGAAAAACTCAAAAAAAAAAAAAAAAGAATTTATGTTCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCCAGAAAAACTCAAAAAAAAAAAAAAAAGAATTTATGTTCT  1094

seq1  TGGGGGCTGGAGAGATGGCTCAGTGGTTACGAGCACTGACTGCTCTTCCA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGGAGAGATGGCTCAGTGGTTACGAGCACTGACTGCTCTTCCA  1144

seq1  GAGGTCCTGAATTC  1148
      ||||||||||||||
seq2  GAGGTCCTGAATTC  1158