BAC Information

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BAC

Clone NameB6Ng01-237N15
Chromosome1 (Build37)
Map Location 133,530,845 - 133,715,768
singlet/doubletdoublet
Overlap geneCtse, 5430435G22Rik, Slc26a9, 4732466D17Rik
Upstream geneC4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238
Downstream geneSlc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N15.bB6Ng01-237N15.g
ACCGA048702GA048703
length7621,050
definitionB6Ng01-237N15.b B6Ng01-237N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,530,845 - 133,531,599)(133,714,707 - 133,715,768)
sequence
gaattctcttagacaaaaccaaaattccatccagataacatcaagaatca
tttaaacacactgaagggcaaacaacatttggaagctagattaaaggtgt
acaagagggataacgagcaagaaaaccaataaatatataaataaataaac
aaacaaacaaataaataaataaataaataaacaaacaaacaaataaagct
caaaactagaccatgagagcggagcagaggagggactgcacctttgatgg
ctgtgtgcaaccaaccaagtaaattaacaaattaattctaaaatcaaaga
aaatatccaatacagcaaaacttgttttagtatatgctgtgtctctagca
gcatgagatggactgtatgactaagaggaagtggccattgataccaacag
ctgtcctatacccactccttctgcagtctgctgggggggggggtgtgcac
aactccattggccttataagatatggcaaaagattaaaagttagtgctaa
aaggatgtgctgtatgataagttatttctgtgcctgtaagatgagccaat
tcaatccagattaatatatattattttatataatatatttctattacaca
cacacacacacacacatatatatatatatacacacaacacacacacacac
acacatacatatatattcgcaaagtttaaatggggaagctgcttttgggt
cttttggggtggagctagttcactggttccaaggaagggagccagggaag
tcaccatgggaa
gaattcagggtttggtagatgggtagggtttgagctggaggaatgcctca
gattttgtatccatcctgtgcagagtctaattctagccatggtacctaaa
gcttgagccaccccttccagagctttcaaggacattggactagtatttgt
gttctctcagggcatgagtgagaaccttttccctttgacttagggtttta
ctgctgtgaacagacaccatgaccaaggcgactctcataaggacatttaa
ttggggctggcttacagattcagaggttctattatcatcaaggcaggaat
gtgacagcatccaggcaggcatggtacaggaggagatgagagttctatat
attcttctgaaggctgctaggagagtactagcttccaggcagctaggatg
agagccttaaagctcacacccacagtgacacacctcctccaacaggtcat
actttctaatagtgccacatcctgggttgagcatatacacaccatcacac
ccctcaagggtctttcttccccttgagggtttcagaaactttatcttttc
taaggctagaaaaggaagtgagccagaaggggacaaattccctgccccct
cctccctccaggcactctgtgctcattagaggtgtgattgtaaggaaata
cagctgaacctagagagtggagcagggacaggcactggctgtcagacaca
gggagaggtttgaatagggagaggtcaacccagggaacagagctggagca
aggaactaattccaaatggagaggaatttttgttgtctccctttcctcag
gggtcacaaggaataagccaaaccccacaggtttttttgggagtcaggac
tttggaatgtcacctccttttagttctagagctgttcctaacatcctgcc
acttgggcttttggaggtctgttttcctcttcagactagcagcatagact
tgattcagatagatcctgaatcatttttgacctgggacttcattttataa
attgagcaatagccaacctcaaatttgtaacctcgtttttctgttcaaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133530845_133531599
seq2: B6Ng01-237N15.b_49_810

seq1  GAATTCTCTTAGACAAAACCAAAATTCCATCCAGATAACATCAAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGACAAAACCAAAATTCCATCCAGATAACATCAAGAATCA  50

seq1  TTTAAACACACTGAAGGGCAAACAACATTTGGAAGCTAGATTAAAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACACACTGAAGGGCAAACAACATTTGGAAGCTAGATTAAAGGTGT  100

seq1  ACAAGAGGGATAACGAGCAAGAAAACCAATAAATATATAAATAAATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGATAACGAGCAAGAAAACCAATAAATATATAAATAAATAAAC  150

seq1  AAACAAACAAATAAATAAATAAATAAATAAACAAACAAACAAATAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAATAAATAAATAAATAAATAAACAAACAAACAAATAAAGCT  200

seq1  CAAAACTAGACCATGAGAGCGGAGCAGAGGAGGGACTGCACCTTTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGACCATGAGAGCGGAGCAGAGGAGGGACTGCACCTTTGATGG  250

seq1  CTGTGTGCAACCAACCAAGTAAATTAACAAATTAATTCTAAAATCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAACCAACCAAGTAAATTAACAAATTAATTCTAAAATCAAAGA  300

seq1  AAATATCCAATACAGCAAAACTTGTTTTAGTATATGCTGTGTCTCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAATACAGCAAAACTTGTTTTAGTATATGCTGTGTCTCTAGCA  350

seq1  GCATGAGATGGACTGTATGACTAAGAGGAAGTGGCCATTGATACCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGATGGACTGTATGACTAAGAGGAAGTGGCCATTGATACCAACAG  400

seq1  CTGTCCTATACCCACTCCTTCTGCAGTCTGCTGGGGGGGGGGGTGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATACCCACTCCTTCTGCAGTCTGCTGGGGGGGGGGGTGTGCAC  450

seq1  AACTCCATTGGCCTTATAAGATATGGCAAAAGATTAAAAGTTAGTGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTGGCCTTATAAGATATGGCAAAAGATTAAAAGTTAGTGCTAA  500

seq1  AAGGATGTGCTGTATGATAAGTTATTTCTGTGCCTGTAAGATGAGCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGCTGTATGATAAGTTATTTCTGTGCCTGTAAGATGAGCCAAT  550

seq1  TCAATCCAGATTAATATATATTATTTTATATAATATA-TTCTATTACACA  599
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAATCCAGATTAATATATATTATTTTATATAATATATTTCTATTACACA  600

seq1  CACACACACACACACATATATATATATATACACAC-ACACACACACACAC  648
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACACACACACACACATATATATATATATACACACAACACACACACACAC  650

seq1  ACACATACATATATATTCGC-AAGTTTAA--TGGGAAGCTGCTTTTGGGT  695
      |||||||||||||||||||| ||||||||   ||||||||||||||||||
seq2  ACACATACATATATATTCGCAAAGTTTAAATGGGGAAGCTGCTTTTGGGT  700

seq1  CTTTTGGG--TGAGCTAGTTCACTGGTTCCAAGGAAGGAGGCCAGGGAAG  743
      ||||||||   |||||||||||||||||||||||||||  ||||||||||
seq2  CTTTTGGGGTGGAGCTAGTTCACTGGTTCCAAGGAAGGGAGCCAGGGAAG  750

seq1  TCACCATGGGAA  755
      ||||||||||||
seq2  TCACCATGGGAA  762

seq1: chr1_133714707_133715768
seq2: B6Ng01-237N15.g_67_1116 (reverse)

seq1  TCTTGGAAACAGAAAACAGA-GTAACAAAATTTGA-GTGTGCTATTGCTC  48
      |||||  |||||||||  || || || |||||||| ||  ||||||||| 
seq2  TCTTG--AACAGAAAAACGAGGTTAC-AAATTTGAGGTTGGCTATTGCT-  46

seq1  CATTTTATAAAAATGAAGTCCCAGGTTTAAAAAATGAATTCAGGATCTAT  98
      || ||||| ||||||||||||||||  | ||||||| |||||||||||||
seq2  CAATTTAT-AAAATGAAGTCCCAGG--TCAAAAATG-ATTCAGGATCTAT  92

seq1  CTGAATTCAAAGTCTATGCTGCTAGTTCTGAAGA-GAAAACAGACCTCCA  147
      ||||||   |||||||||||||||| |||||||| |||||||||||||||
seq2  CTGAAT--CAAGTCTATGCTGCTAG-TCTGAAGAGGAAAACAGACCTCCA  139

seq1  AAAGCCCAAGGTGGCAGGATGTTAAGGAACAGCTCTAGAACTAAAAGGAG  197
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGCCCAA-GTGGCAGGATGTT-AGGAACAGCTCTAGAACTAAAAGGAG  187

seq1  GTGACAATTCCCAAGTCCTGACTCCCAAAAAAACCTGTGGGGTTTGGCTT  247
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGAC-ATTCCAAAGTCCTGACTCCCAAAAAAACCTGTGGGGTTTGGCTT  236

seq1  ATTCCTTGTGACCCCTGAGGAAAGGGAGACAACAAAAATTCCTCTCCATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTGACCCCTGAGGAAAGGGAGACAACAAAAATTCCTCTCCATT  286

seq1  TGGAATTAGTTCCTTGCTCCAGCTCTGTTCCCTGGGTTGACCTCTCCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAGTTCCTTGCTCCAGCTCTGTTCCCTGGGTTGACCTCTCCCTA  336

seq1  TTCAAACCTCTCCCTGTGTCTGACAGCCAGTGCCTGTCCCTGCTCCCACT  397
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAAACCTCTCCCTGTGTCTGACAGCCAGTGCCTGTCCCTGCT-CCACT  385

seq1  CTCTAGGTTCAGCTGTATTTCCTTACAATCACACCTCTAATGAGCACAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTTCAGCTGTATTTCCTTACAATCACACCTCTAATGAGCACAGA  435

seq1  GTGCCTGGAGGGAGGAGGGGGCAGGGAATTTGTCCCCTTCTGGCTCACTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGAGGGAGGAGGGGGCAGGGAATTTGTCCCCTTCTGGCTCACTT  485

seq1  CCTTTTCTAGCCTTAGAAAAGATAAAGTTTCTGAAACCCTCAAGGGGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTAGCCTTAGAAAAGATAAAGTTTCTGAAACCCTCAAGGGGAAG  535

seq1  AAAGACCCTTGAGGGGTGTGATGGTGTGTATATGCTCAACCCAGGATGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTTGAGGGGTGTGATGGTGTGTATATGCTCAACCCAGGATGTG  585

seq1  GCACTATTAGAAAGTATGACCTGTTGGAGGAGGTGTGTCACTGTGGGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTAGAAAGTATGACCTGTTGGAGGAGGTGTGTCACTGTGGGTGT  635

seq1  GAGCTTTAAGGCTCTCATCCTAGCTGCCTGGAAGCTAGTACTCTCCTAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAAGGCTCTCATCCTAGCTGCCTGGAAGCTAGTACTCTCCTAGC  685

seq1  AGCCTTCAGAAGAATATATAGAACTCTCATCTCCTCCTGTACCATGCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCAGAAGAATATATAGAACTCTCATCTCCTCCTGTACCATGCCTG  735

seq1  CCTGGATGCTGTCACATTCCTGCCTTGATGATAATAGAACCTCTGAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGCTGTCACATTCCTGCCTTGATGATAATAGAACCTCTGAATCT  785

seq1  GTAAGCCAGCCCCAATTAAATGTCCTTATGAGAGTCGCCTTGGTCATGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAGCCCCAATTAAATGTCCTTATGAGAGTCGCCTTGGTCATGGT  835

seq1  GTCTGTTCACAGCAGTAAAACCCTAAGTCAAAGGGAAAAGGTTCTCACTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACAGCAGTAAAACCCTAAGTCAAAGGGAAAAGGTTCTCACTC  885

seq1  ATGCCCTGAGAGAACACAAATACTAGTCCAATGTCCTTGAAAGCTCTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGAGAGAACACAAATACTAGTCCAATGTCCTTGAAAGCTCTGGA  935

seq1  AGGGGTGGCTCAAGCTTTAGGTACCATGGCTAGAATTAGACTCTGCACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGCTCAAGCTTTAGGTACCATGGCTAGAATTAGACTCTGCACAG  985

seq1  GATGGATACAAAATCTGAGGCATTCCTCCAGCTCAAACCCTACCCATCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATACAAAATCTGAGGCATTCCTCCAGCTCAAACCCTACCCATCTA  1035

seq1  CCAAACCCTGAATTC  1062
      |||||||||||||||
seq2  CCAAACCCTGAATTC  1050