BAC Information

Click to search

BAC

Clone NameB6Ng01-237N24
Chromosome1 (Build37)
Map Location 18,405,165 - 18,420,653
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N24.bB6Ng01-237N24.g
ACCGA048720GA048721
length9861,179
definitionB6Ng01-237N24.b B6Ng01-237N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,419,686 - 18,420,653)(18,405,165 - 18,406,316)
sequence
gaattctttgtttagttctagaccccatgttttgattaggttgtttgggt
tttttgtatttagcttcttgagagctttatatattttggatattagccct
ctattggatgtgggttattgaagttctttttttccccaacctgtagcttg
tcgatatgttttattgattatgtcctttgccttacagaagctttccagtt
tcatgaggtcccatatatcaattctttatcttagagcatgagcgattgga
cttctgtttaggaaattttccccgtgccaataagttcaaggctcttttcc
aaaagcaaataaatgaaattaaagagatacaaaagacctaagcagaaacc
aatgtctttactaaacaccaataacaatgtttttgagattagcaagaaaa
taaccccattagcatcgtttcccccgcatccatccatgaatatatcaata
aatatacccaactatgaaggcaaaaaatcttttcaaagaacagtaagaat
caaaataaagactctagaagatacacattttttctttctgggtgagtaga
attagtgctgttcaagtgttcatattactaaaccaatctacagagtcagt
ataagtctcatcaatatcctaataacattttccacagaactacattggca
ttttgcataattcatactttaacatgtgacagatgggttaaaggagtacc
agcaataagtggcacctctctattctgtttaaactgaactccttagtgtg
aactttaattatttaaagtgtctaactctttctttttctaaaatattcca
ttagcaatactacttcaacacacattcattatatttatgctcatgacata
gtctatccaagatgacaatatttcaatatttcctttttgagactatttct
aaaatttatttatttattcattttacaacccaatagtagcccctcttctc
ctttcagtactccctcattcaagccccccccccatt

gaattctctcaaaatcttggctattattactgtcttccttagtgtgtgaa
tttaaatctgttaaccatagttcccaggtgtgaaaggctaaagctgaaac
ctgtaacatcgaatatgcattatttagcttcgaatctttggaaaaaccta
ataaggaaaatctgcattaaactaacacaaaagaaacctagagacaggtg
ccttacttaacggaggattcaattcctaatatttgttatttaaatacaaa
acttttctatattcaagtgtgattgaatttagaatgactttaaatctaca
catttgtcaggaccatacagactgtatgtagtgaaagatgtctgcattta
agcaaactttaatttagttattattaaataatgacaattgaacaagtgat
cctccctttagggggtactataacttctaccaactaaagagtagtaagct
tcacaataattaaaaagactgtgcttatgttaattgtagtgcttgtcaac
aaatgtggtcattctgttaaaaaaaaaaccaacctattacagtaacagtg
ggaatattttgtacacatgtcaatgaacttcctcggagaaggactcttga
atgctggaggaggtactaggtcaatggcaatccatttctttttctttctt
ttttttattttttattttttacttttaggtttgtaaaccttaggtgccag
ccagcaaacatgctacagacaaagcacttgtgggtgtactatgagaacat
gaaaaaaaaaatatttgagaacacttcctattacctgtgttgctgtgtat
tgagggtgtggattggagacaggcatacatgtgcttatgttcatgtttta
ctataggtgtatggcatgccctgtcatccctttcctcaagagcaattgtt
atgcttttcagcagtgttcagctcaacagggccagcgttgcttacaaaga
attgcagcattcttttctttaagccagccagaacatgcaccttcttggat
gtctcctcctcattatcatctggcctgggtttgactgttccctgcctccc
ttgcctcctctaagggtcaggcctggggtccttccaccctcccactactt
aattggggtgcacacagcagccccctctctccactgatctggccattgac
cgagattcctgtccaccccttttaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18419686_18420653
seq2: B6Ng01-237N24.b_46_1012 (reverse)

seq1  TGAGGGAGTACTGAAAGGAGAAGAGGGGCTACTATTGGGTTGTAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTACTGAAAGGAGAAGAGGGGCTACTATTGGGTTGTAAAATGA  50

seq1  ATAAATAAATAAATTTTAGAAATAGTCTCAAAAAGGAAATATTGAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAATAAATAAATTTTAGAAATAGTCTCAAAAAGGAAATATTGAAATA-  99

seq1  TTGTCATCTTGGATAGACTATGTCATGAGCATAAATATAATGAATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTTGGATAGACTATGTCATGAGCATAAATATAATGAATGTGTG  149

seq1  TTGAAGTAGTATTGCTAATGGAATATTTTAGAAAAAGAAAGAGTTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAGTATTGCTAATGGAATATTTTAGAAAAAGAAAGAGTTAGACA  199

seq1  CTTTAAATAATTAAAGTTCACACTAAGGAGTTCAGTTTAAACAGAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATAATTAAAGTTCACACTAAGGAGTTCAGTTTAAACAGAATAGA  249

seq1  GAGGTGCCACTTATTGCTGGTACTCCTTTAACCCATCTGTCACATGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCCACTTATTGCTGGTACTCCTTTAACCCATCTGTCACATGTTAA  299

seq1  AGTATGAATTATGCAAAATGCCAATGTAGTTCTGTGGAAAATGTTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAATTATGCAAAATGCCAATGTAGTTCTGTGGAAAATGTTATTAG  349

seq1  GATATTGATGAGACTTATACTGACTCTGTAGATTGGTTTAGTAATATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGATGAGACTTATACTGACTCTGTAGATTGGTTTAGTAATATGAA  399

seq1  CACTTGAACAGCACTAATTCTACTCACCCAGAAAGAAAAAATGTGTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAACAGCACTAATTCTACTCACCCAGAAAGAAAAAATGTGTATCT  449

seq1  TCTAGAGTCTTTATTTTGATTCTTACTGTTCTTTGAAAAGATTTTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTCTTTATTTTGATTCTTACTGTTCTTTGAAAAGATTTTTTGCC  499

seq1  TTCATAGTTGGGTATATTTATTGATATATTCATGGATGGATGCGGGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTGGGTATATTTATTGATATATTCATGGATGGATGCGGGGGAA  549

seq1  ACGATGCTAATGGGGTTATTTTCTTGCTAATCTCAAAAACATTGTTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCTAATGGGGTTATTTTCTTGCTAATCTCAAAAACATTGTTATTG  599

seq1  GTGTTTAGTAAAGACATTGGTTTCTGCTTAGGTCTTTTGTATCTCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGTAAAGACATTGGTTTCTGCTTAGGTCTTTTGTATCTCTTTAA  649

seq1  TTTCATTTATTTGCTTTTGGAAAAGAGCCTTGAACTTATTGGCACGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATTTGCTTTTGGAAAAGAGCCTTGAACTTATTGGCACGGGGA  699

seq1  AAATTTCCTAAACAGAAGTCCAATCGCTCATGCTCTAAGATAAAGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTAAACAGAAGTCCAATCGCTCATGCTCTAAGATAAAGAATTG  749

seq1  ATATATGGGACCTCATGAAACTGGAAAGCTTCTGTAAGGCAAAGGACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGGACCTCATGAAACTGGAAAGCTTCTGTAAGGCAAAGGACATA  799

seq1  ATCAATAAAACATATCGACAAGCTACAGGTTGGGGAAAAAAAGAACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAACATATCGACAAGCTACAGGTTGGGGAAAAAAAGAACTTCA  849

seq1  ATAACCCACATCCAATAGAGGGCTAATATCCAAAATATATAAAGCTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCACATCCAATAGAGGGCTAATATCCAAAATATATAAAGCTCTCA  899

seq1  AGAAGCTAAATACAAAAAACCCAAACAACCTAATCAAAACATGGGGTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAAATACAAAAAACCCAAACAACCTAATCAAAACATGGGGTCTA  949

seq1  GAACTAAACAAAGAATTC  968
      ||||||||||||||||||
seq2  GAACTAAACAAAGAATTC  967


seq1: chr1_18405165_18406316
seq2: B6Ng01-237N24.g_67_1245

seq1  GAATTCTCTCAAAATCTTGGCTATTATTACTGTCTTCCTTAGTGTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAATCTTGGCTATTATTACTGTCTTCCTTAGTGTGTGAA  50

seq1  TTTAAATCTGTTAACCATAGTTCCCAGGTGTGAAAGGCTAAAGCTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTGTTAACCATAGTTCCCAGGTGTGAAAGGCTAAAGCTGAAAC  100

seq1  CTGTAACATCGAATATGCATTATTTAGCTTCGAATCTTTGGAAAAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACATCGAATATGCATTATTTAGCTTCGAATCTTTGGAAAAACCTA  150

seq1  ATAAGGAAAATCTGCATTAAACTAACACAAAAGAAACCTAGAGACAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAATCTGCATTAAACTAACACAAAAGAAACCTAGAGACAGGTG  200

seq1  CCTTACTTAACGGAGGATTCAATTCCTAATATTTGTTATTTAAATACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTAACGGAGGATTCAATTCCTAATATTTGTTATTTAAATACAAA  250

seq1  ACTTTTCTATATTCAAGTGTGATTGAATTTAGAATGACTTTAAATCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATATTCAAGTGTGATTGAATTTAGAATGACTTTAAATCTACA  300

seq1  CATTTGTCAGGACCATACAGACTGTATGTAGTGAAAGATGTCTGCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAGGACCATACAGACTGTATGTAGTGAAAGATGTCTGCATTTA  350

seq1  AGCAAACTTTAATTTAGTTATTATTAAATAATGACAATTGAACAAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTTTAATTTAGTTATTATTAAATAATGACAATTGAACAAGTGAT  400

seq1  CCTCCCTTTAGGGGGTACTATAACTTCTACCAACTAAAGAGTAGTAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTAGGGGGTACTATAACTTCTACCAACTAAAGAGTAGTAAGCT  450

seq1  TCACAATAATTAAAAAGACTGTGCTTATGTTAATTGTAGTGCTTGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAATTAAAAAGACTGTGCTTATGTTAATTGTAGTGCTTGTCAAC  500

seq1  AAATGTGGTCATTCTGTTAAAAAAAAAACCAACCTATTACAGTAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTCATTCTGTTAAAAAAAAAACCAACCTATTACAGTAACAGTG  550

seq1  GGAATATTTTGTACACATGTCAATGAACTTCCTCGGAGAAGGACTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTTGTACACATGTCAATGAACTTCCTCGGAGAAGGACTCTTGA  600

seq1  ATGCTGGAGGAGGTACTAGGTCAATGGCAATCCATTTCTTTTTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGGAGGTACTAGGTCAATGGCAATCCATTTCTTTTTCTTTCTT  650

seq1  TTTTTTATTTTTTATTTTTTACTTTTAGGTTTGTAAACCTTAGGTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTATTTTTTACTTTTAGGTTTGTAAACCTTAGGTGCCAG  700

seq1  CCAGCAAACATGCTACAGACAAAGCACTTGTGGGTGTACTATGAGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACATGCTACAGACAAAGCACTTGTGGGTGTACTATGAGAACAT  750

seq1  G-AAAAAAAAATATTTGAGAACACTTCCTATTACCTGTGTTGCTGTGTAT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAATATTTGAGAACACTTCCTATTACCTGTGTTGCTGTGTAT  800

seq1  TGAGGGTGTGGATTGGAGACAGGCATACATGTGCTTATGTTCATGTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTGGATTGGAGACAGGCATACATGTGCTTATGTTCATGTTTTA  850

seq1  CTATAGGTGTATGGCATG-CCTGTCATCC--TTTCTCAAGAGCAATTGTT  896
      |||||||||||||||||| ||||||||||  || ||||||||||||||||
seq2  CTATAGGTGTATGGCATGCCCTGTCATCCCTTTCCTCAAGAGCAATTGTT  900

seq1  ATGCTTTTCAGCAGTGTTCAGCTC-ACA-GGCCAGCGTTGCTTACAAAGA  944
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ATGCTTTTCAGCAGTGTTCAGCTCAACAGGGCCAGCGTTGCTTACAAAGA  950

seq1  A-TGCAGCAT--CTTTCTTTAAGCCAGCCAGACAATGCA-CTTCTTGGAT  990
      | ||||||||   |||||||||||||||||||  ||||| ||||||||||
seq2  ATTGCAGCATTCTTTTCTTTAAGCCAGCCAGAACATGCACCTTCTTGGAT  1000

seq1  GTCTCCTTCTCATTATCATTCTGCCTGGGTTTTGACTGTTTCCCTGCCT-  1039
      ||||||| |||||||||||   ||||||| |||||||| |||||||||| 
seq2  GTCTCCTCCTCATTATCATCTGGCCTGGG-TTTGACTG-TTCCCTGCCTC  1048

seq1  CCTTGCCT-CTCTAAAGGTCA-GCCTGGGGTC--TTCAC---TCCACTAC  1082
      |||||||| |||||| ||||| ||||||||||  | |||    |||||||
seq2  CCTTGCCTCCTCTAAGGGTCAGGCCTGGGGTCCTTCCACCCTCCCACTAC  1098

seq1  -TAAT--GGGTGCACA-AGCAGCCCTCT-----CACTGTTCCTG-CAGTG  1122
       ||||  ||||||||| |||||||| ||     ||||| ||  | || ||
seq2  TTAATTGGGGTGCACACAGCAGCCCCCTCTCTCCACTGATCTGGCCATTG  1148

seq1  GCAGAGGAATTCTGTCCACCCCTTT--ATGCC  1152
       | || || | ||||||||||||||  |||||
seq2  ACCGA-GATTCCTGTCCACCCCTTTTAATGCC  1179


| Home | SequenceCutter | Blast | Download |