BAC Information

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BAC

Clone NameB6Ng01-238B21
Chromosome1 (Build37)
Map Location 183,276,164 - 183,418,233
singlet/doubletdoublet
Overlap geneCnih3
Upstream geneItpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519
Downstream geneCcdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238B21.bB6Ng01-238B21.g
ACCGA048896GA048897
length1,079183
definitionB6Ng01-238B21.b B6Ng01-238B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,417,146 - 183,418,233)(183,276,164 - 183,276,346)
sequence
gaattcttccagtctagaaattttagatgggtctcactgagctaaaatca
agttaacagggctggttccttctagagcctccagagaaaaacccacaccc
tgtcttttcctatcttcatatactgccatctcaaagtccaaaagggcagg
ggaggccttcccatctctgcttcccctgcctctctgccacaaccccattc
tctcccttaaagaactcttgcgttgaccttagtttccccttgggacgacc
aagaattgtttctccatcttaggaacagctgattcacaatggaggctcta
tctgcaactttaatccctcctcgttgtgtgaaatagcatctctgcacttt
ctgaaagcatcgttgggaggcattgctttgcttagcatgacccccccccc
aagcttgcttcccacccttttctggctttaatcttcttactctgcaacaa
catgatcccatgtgttagatcacttcccacaccaccttggagtgctcagt
gccttctcacacccctaaacccagctgctgctctgttaacaatacatttg
caaatagtgggtactcctgttctgcctgggtcatctctgcaccatgggat
tcaggttgcagtcaatttattacagtatgtgggctgtctttagctaaatt
caggagtaaggctgctcctgtactctgtgttatctttgcccttgctttgt
ggtatagattggtctttgaatcatctgtagctcatgaaaactgggatagc
atgaaatccccccaggtcttgaaagcttgaagacaaatgttaggtggagg
caggcagtatatgaagggcttaattttcatggcgccctaatgtgtaaatc
gtggtaaacattatcgaagccttgcagagaaagtctgaaaattatgctgg
ccttgttttctgttttgtatgttcacttagcctaaccagcattaatgatt
aaaactaatttaaagctcctttctgtcccatgctcattctctcttagact
ccagttcccaggtgatcagataatagtttgcgtcttcccatgctcaggaa
atggtcatgcagatacctgagaaagggcc
acaggcaggagagatagctcagcaataaaggccctcggctctgcttggtc
agtctctaagactcacacagtagaaggagagaaatgactgccacaaatag
ttctatgagttcttatggaataagacaatgaagcttcttgctttcttctg
tgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183417146_183418233
seq2: B6Ng01-238B21.b_47_1125 (reverse)

seq1  GGCCCCTTTTCTCAGGTTATCTGGCATGGCCCATCTCCTGAGCATGGGAG  50
      |||||  ||||||||| ||||| |||| | |||| |||||||||||||| 
seq2  GGCCC--TTTCTCAGG-TATCT-GCAT-GACCATTTCCTGAGCATGGGAA  45

seq1  GACCGCAAACTATTATCCTGATCACCTGGGAACTGGAGTCTAAGAGAGGA  100
      || ||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GA-CGCAAACTATTAT-CTGATCACCTGGGAACTGGAGTCTAAGAGA-GA  92

seq1  ATGAGCATGGGACAGAAAGGAGCTTTTAAATTAGTTTTAATCATTAATGC  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGAGCATGGGACAGAAAGGAGC-TTTAAATTAGTTTTAATCATTAATGC  141

seq1  TGGTTAGGCTAAGTGAACATACAAAACAGAAAACAAGGCCAGCATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGGCTAAGTGAACATACAAAACAGAAAACAAGGCCAGCATAATTT  191

seq1  TCAGACTTTCTCTGCAAGGCTTTCGATAATGTTTACCACGATTTACACAT  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGACTTTCTCTGCAAGGC-TTCGATAATGTTTACCACGATTTACACAT  240

seq1  TAGGGCGCCATG-AAATTAAGCCCTTCATATACTGCCTGCCTCCACCTAA  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGGGCGCCATGAAAATTAAGCCCTTCATATACTGCCTGCCTCCACCTAA  290

seq1  CATTTGTCTTCAAGCTTTCAAGACCTGGGGGGATTTCATGCTATCCCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTTCAAGCTTTCAAGACCTGGGGGGATTTCATGCTATCCCAGT  340

seq1  TTTCATGAGCTACAGATGATTCAAAGACCAATCTATACCACAAAGCAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGCTACAGATGATTCAAAGACCAATCTATACCACAAAGCAAGG  390

seq1  GCAAAGATAACACAGAGTACAGGAGCAGCCTTACTCCTGAATTTAGCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATAACACAGAGTACAGGAGCAGCCTTACTCCTGAATTTAGCTAA  440

seq1  AGACAGCCCACATACTGTAATAAATTGACTGCAACCTGAATCCCATGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCCACATACTGTAATAAATTGACTGCAACCTGAATCCCATGGTG  490

seq1  CAGAGATGACCCAGGCAGAACAGGAGTACCCACTATTTGCAAATGTATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGACCCAGGCAGAACAGGAGTACCCACTATTTGCAAATGTATTG  540

seq1  TTAACAGAGCAGCAGCTGGGTTTAGGGGTGTGAGAAGGCACTGAGCACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGCAGCAGCTGGGTTTAGGGGTGTGAGAAGGCACTGAGCACTC  590

seq1  CAAGGTGGTGTGGGAAGTGATCTAACACATGGGATCATGTTGTTGCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGTGTGGGAAGTGATCTAACACATGGGATCATGTTGTTGCAGAG  640

seq1  TAAGAAGATTAAAGCCAGAAAAGGGTGGGAAGCAAGCTTGGGGGGGGGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGATTAAAGCCAGAAAAGGGTGGGAAGCAAGCTTGGGGGGGGGGT  690

seq1  CATGCTAAGCAAAGCAATGCCTCCCAACGATGCTTTCAGAAAGTGCAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAGCAAAGCAATGCCTCCCAACGATGCTTTCAGAAAGTGCAGAG  740

seq1  ATGCTATTTCACACAACGAGGAGGGATTAAAGTTGCAGATAGAGCCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTCACACAACGAGGAGGGATTAAAGTTGCAGATAGAGCCTCCA  790

seq1  TTGTGAATCAGCTGTTCCTAAGATGGAGAAACAATTCTTGGTCGTCCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATCAGCTGTTCCTAAGATGGAGAAACAATTCTTGGTCGTCCCAA  840

seq1  GGGGAAACTAAGGTCAACGCAAGAGTTCTTTAAGGGAGAGAATGGGGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACTAAGGTCAACGCAAGAGTTCTTTAAGGGAGAGAATGGGGTTG  890

seq1  TGGCAGAGAGGCAGGGGAAGCAGAGATGGGAAGGCCTCCCCTGCCCTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGAGGCAGGGGAAGCAGAGATGGGAAGGCCTCCCCTGCCCTTTT  940

seq1  GGACTTTGAGATGGCAGTATATGAAGATAGGAAAAGACAGGGTGTGGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGAGATGGCAGTATATGAAGATAGGAAAAGACAGGGTGTGGGTT  990

seq1  TTTCTCTGGAGGCTCTAGAAGGAACCAGCCCTGTTAACTTGATTTTAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGAGGCTCTAGAAGGAACCAGCCCTGTTAACTTGATTTTAGCT  1040

seq1  CAGTGAGACCCATCTAAAATTTCTAGACTGGAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACCCATCTAAAATTTCTAGACTGGAAGAATTC  1079

seq1: chr1_183276164_183276346
seq2: B6Ng01-238B21.g_71_253

seq1  ACAGGCAGGAGAGATAGCTCAGCAATAAAGGCCCTCGGCTCTGCTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGAGAGATAGCTCAGCAATAAAGGCCCTCGGCTCTGCTTGGTC  50

seq1  AGTCTCTAAGACTCACACAGTAGAAGGAGAGAAATGACTGCCACAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAAGACTCACACAGTAGAAGGAGAGAAATGACTGCCACAAATAG  100

seq1  TTCTATGAGTTCTTATGGAATAAGACAATGAAGCTTCTTGCTTTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAGTTCTTATGGAATAAGACAATGAAGCTTCTTGCTTTCTTCTG  150

seq1  TGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  183
      |||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTG  183