BAC Information

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BAC

Clone NameB6Ng01-238E15
Chromosome1 (Build37)
Map Location 88,366,944 - 88,533,868
singlet/doubletdoublet
Overlap geneLOC100040414, Ptma, Pde6d, Cops7b
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Downstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238E15.bB6Ng01-238E15.g
ACCGA049024GA049025
length4811,065
definitionB6Ng01-238E15.b B6Ng01-238E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,533,382 - 88,533,868)(88,366,944 - 88,368,023)
sequence
ctttccaccctcctggaccgacctcccacagctatctttgaaaagccagc
atattacatgggactgagaactaagtctcggctttggaataacagatctg
attgaaacttgcctctgacacttaacagccttatgactttgggaaaatta
ggggacagaactgaacactgtattctccaggagcagcagggtgtcctaat
ctatgggaagggcccacaccctccatcctttctcaaagaggcagcctctt
tcccagtttctgtgttctgttctacccttccacagcagctaatctctgaa
agcctcttatgaaaggaaaatggaaagtagccaaaccaatcatattctct
gaagattccaaatacggcaaaatagggagtgaatagcattggaccgggtc
cagtggagcctgggatgaagtctccagctcatctttggttttcgtttggt
tattggtttggggttgttgttgttgttgttg
gaattccaggccagattacaggcagaccttaattcaaaacaaacaaacaa
aattgccctataagcatttacaccgtgtgtgttttgtagtagcattaaaa
aaaaagaaaaaagaaaaaaaaacccacaaagcaaaggtcagaggcattat
ttgtaacttactgtggatatttcaaaagaacaatttttggctaacactca
gagatgacagaaatagacgattgcgtcactgcctgattaaaacggaaaag
ctgaaggttttccaaaaggaaacaagaggaggcaaggagtctagactgac
cactcagaagtgtgtgtgtgtgtgagtgataccaagcatcggtgggtggg
gcctttgtgcggacaaagtccatatctggatgtggctagtggacattttt
agcagcccagcagcttgtgacctgtgactgggaggcttttcccaggggac
aagtgcacagtcagaaactacatgggggcagctgcctccctgactttgcc
tgtgcccaaacagtaagagtgcgtcatgcctgatgcattgccaggcaacg
cagtgtatctgggtgtgtcccttaaggctctctccaactcggtagcttat
gcatagcctgctttgcctgtgttcctggctggtaatgtcctcaagagata
gcgagctctctcattcactcttcccactctcctctttcctggttggttga
tactaaggatggaagccaaggcctttcgcttgttaggcaagtacactacc
acgagccacgcccccagcctgtgacaactctctcctggtcttagtgtgca
aggcttgtattctcttacactgctacatcggcaggctgtagttagaactg
gaagtttccatttagcctcggaagcgagccctcctcgaacctgaaagttt
gactgtggaagggctctagtcaccccctgcctgcgacgactttagagaaa
tactaatcctcacaagtgctgggtgaggagtggcggcccacttctttcaa
aattgcatagactgctaccagagagatttcttgctccaaacatgtctggt
gatttttttttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88533382_88533868
seq2: B6Ng01-238E15.b_44_530 (reverse)

seq1  CAACAACAACAACAACAACCCCAAACCAATAACCAAACGAAAACCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAACAACCCCAAACCAATAACCAAACGAAAACCAAAGA  50

seq1  TGAGCTGGAGACTTCATCCCAGGCTCCACTGGACCCGGTCCAATGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGAGACTTCATCCCAGGCTCCACTGGACCCGGTCCAATGCTATT  100

seq1  CACTCCCTATTTTGCCGTATTTGGAATCTTCAGAGAATATGATTGGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTATTTTGCCGTATTTGGAATCTTCAGAGAATATGATTGGTTTG  150

seq1  GCTACTTTCCATTTTCCTTTCATAAGAGGCTTTCAGAGATTAGCTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTCCATTTTCCTTTCATAAGAGGCTTTCAGAGATTAGCTGCTGT  200

seq1  GGAAGGGTAGAACAGAACACAGAAACTGGGAAAGAGGCTGCCTCTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTAGAACAGAACACAGAAACTGGGAAAGAGGCTGCCTCTTTGAG  250

seq1  AAAGGATGGAGGGTGTGGGCCCTTCCCATAGATTAGGACACCCTGCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGAGGGTGTGGGCCCTTCCCATAGATTAGGACACCCTGCTGCT  300

seq1  CCTGGAGAATACAGTGTTCAGTTCTGTCCCCTAATTTTCCCAAAGTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAATACAGTGTTCAGTTCTGTCCCCTAATTTTCCCAAAGTCATA  350

seq1  AGGCTGTTAAGTGTCAGAGGCAAGTTTCAATCAGATCTGTTATTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTAAGTGTCAGAGGCAAGTTTCAATCAGATCTGTTATTCCAAAG  400

seq1  CCGAGACTTAGTTCTCAGTCCCATGTAATATGCTGGCTTTTCAAAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGACTTAGTTCTCAGTCCCATGTAATATGCTGGCTTTTCAAAGATAG  450

seq1  CTGTGGGAGGTCGGTCCAGGAGGGTGGAAAGGAATTC  487
      |||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGGTCGGTCCAGGAGGGTGGAAAGGAATTC  487

seq1: chr1_88366944_88368023
seq2: B6Ng01-238E15.g_67_1131

seq1  GAATTCCAGGCCAGATTACAGGCAGACCTTAATTCAAAACAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGATTACAGGCAGACCTTAATTCAAAACAAACAAACAA  50

seq1  AATTGCCCTATAAGCATTTACACCGTGTGTGTTTTGTAGTAGCATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCTATAAGCATTTACACCGTGTGTGTTTTGTAGTAGCATTAAAA  100

seq1  AAAAAGAAAAAAGAAAAAAAAACCCACAAAGCAAAGGTCAGAGGCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAGAAAAAAAAACCCACAAAGCAAAGGTCAGAGGCATTAT  150

seq1  TTGTAACTTACTGTGGATATTTCAAAAGAACAATTTTTGGCTAACACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTTACTGTGGATATTTCAAAAGAACAATTTTTGGCTAACACTCA  200

seq1  GAGATGACAGAAATAGACGATTGCGTCACTGCCTGATTAAAACGGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACAGAAATAGACGATTGCGTCACTGCCTGATTAAAACGGAAAAG  250

seq1  CTGAAGGTTTTCCAAAAGGAAACAAGAGGAGGCAAGGAGTCTAGACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTTTTCCAAAAGGAAACAAGAGGAGGCAAGGAGTCTAGACTGAC  300

seq1  CACTCAGAAGTGTGTGTGTGTGTGAGTGATACCAAGCATCGGTGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAGTGTGTGTGTGTGTGAGTGATACCAAGCATCGGTGGGTGGG  350

seq1  GCCTTTGTGCGGACAAAGTCCATATCTGGATGTGGCTAGTGGACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTGCGGACAAAGTCCATATCTGGATGTGGCTAGTGGACATTTTT  400

seq1  AGCAGCCCAGCAGCTTGTGACCTGTGACTGGGAGGCTTTTCCCAGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCAGCAGCTTGTGACCTGTGACTGGGAGGCTTTTCCCAGGGGAC  450

seq1  AAGTGCACAGTCAGAAACTACATGGGGGCAGCTGCCTCCCTGACTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAGTCAGAAACTACATGGGGGCAGCTGCCTCCCTGACTTTGCC  500

seq1  TGTGCCCAAACAGTAAGAGTGCGTCATGCCTGATGCATTGCCAGGCAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAAACAGTAAGAGTGCGTCATGCCTGATGCATTGCCAGGCAACG  550

seq1  CAGTGTATCTGGGTGTGTCCCTTAAGGCTCTCTCCAACTCGGTAGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATCTGGGTGTGTCCCTTAAGGCTCTCTCCAACTCGGTAGCTTAT  600

seq1  GCATAGCCTGCTTTGCCTGTGTTCCTGGCTGGTAATGTCCTCAAGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTGCTTTGCCTGTGTTCCTGGCTGGTAATGTCCTCAAGAGATA  650

seq1  GCGAGCTCTCTCATTCACTCTTCCCACTCTCCTCTTTCCTGGTTGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCTCTCATTCACTCTTCCCACTCTCCTCTTTCCTGGTTGGTTGA  700

seq1  TACTAAGGATGGAAGCCAAGGCCTTTCGCTTGTTAGGCAAGTACACTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGATGGAAGCCAAGGCCTTTCGCTTGTTAGGCAAGTACACTACC  750

seq1  ACGAGCCACGCCCCCAGCCTGTGACAACTCTCTCCTGGTCTTAGTGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCACGCCCCCAGCCTGTGACAACTCTCTCCTGGTCTTAGTGTGCA  800

seq1  AGGCTTGTATTCTCTTACACTGCTACATCGGCAGGCTGTAGTTAGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTATTCTCTTACACTGCTACATCGGCAGGCTGTAGTTAGAACTG  850

seq1  GAAGTTTCCATTTAGCCTCGGAAGCGAGCCCTCCTCGAACCTGAAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCATTTAGCCTCGGAAGCGAGCCCTCCTCGAACCTGAAAGTTT  900

seq1  GACTGTGG-AGGGCTCTAGTCA-CCCCTGCCTGCGACGGACTTTAGAGAA  948
      |||||||| ||||||||||||| |||||||||||||| ||||||||||||
seq2  GACTGTGGAAGGGCTCTAGTCACCCCCTGCCTGCGAC-GACTTTAGAGAA  949

seq1  AATAACTTATCCTCACAAGGTGCCTGGGTGAGGGAGT-GCGGCCCAACCT  997
      |   ||| |||||||||| ||| |||||||| ||||| ||||||||    
seq2  A--TACTAATCCTCACAA-GTG-CTGGGTGA-GGAGTGGCGGCCCA---C  991

seq1  TTCTTTCAAAAATTGCATAAGACTGCTACCCAGAGGAGGATTTCTTTGCT  1047
      ||||||| |||||||||| ||||||||| ||||||   |||||| |||| 
seq2  TTCTTTC-AAAATTGCAT-AGACTGCTA-CCAGAG--AGATTTC-TTGC-  1034

seq1  TCCACACCATGTCTGGTGATTTTTTTTTTCCTG  1080
      |||| | |||||||||||| |||||||||||||
seq2  TCCA-AACATGTCTGGTGA-TTTTTTTTTCCTG  1065