BAC Information

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BAC

Clone NameB6Ng01-238F12
Chromosome1 (Build37)
Map Location 164,838,051 - 164,988,389
singlet/doubletdoublet
Overlap geneFmo6, Fmo3, 4921528O07Rik
Upstream genePigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2
Downstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F12.bB6Ng01-238F12.g
ACCGA049065GA049066
length1,1571,108
definitionB6Ng01-238F12.b B6Ng01-238F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,987,252 - 164,988,389)(164,838,051 - 164,839,142)
sequence
gaattcctgtaacagagaaatggccccttttaaaagtgcacaaggaactt
gacatctctgttgatggaggaaattcttcttccaggtgtctaaaattgtg
gaagacatttatgagcagctctgtgggaatccttcccccatgatgaagag
tgtcatgctgcacgttatcagcgtgttaacacgtgcttccccgaagaagg
tcatctttcagctcatggagttcccagtccctgcagacaagtaaggcctc
ccccaggctgtcccgctgcacatactggtccacaaacggcccacaaactc
ctcagtcatgtggcccaagcttggtcctcttgtctagtcaggcccaattt
ctttttctgaaaagaaatttatttttacatcatctaggttgtctgtacat
gttttaaatatgatcatatgttacatgttactttgtgcaatgcttaacac
acagtaggacctcaagactgtattaatgccactattgggagaaggggtta
aattgtgattgttacaaatctcacccaaacttttttttcaaaaagagaat
gtattttttgtccattgtcaactttttttttcttgagaaaaccctcaaac
atacaagtttttcttatttatttatgaattttgttttaatgtacaagtgc
tctgtctgcgtgtacacctgcatgccagaagagggcatcagatcccttta
tagatgctggtgagccaccatgtttgctgcaaattgaattcagaccctct
ggaagagcagtcagtgttcttaagcactgagccatctcaccagcccgggt
ttttcttatttataaagagcagacataagctccaaaataagggccagaga
aatggctcagtggttaagtaagtactgctcttacagagagccagagttaa
attcccagtactcataatgttggggtgacttacaaccaactctggatcca
ggggaattcaaggccctctttctgccttttcataggcacccacttgcatg
ccatgcacacaaaaataaaaattaatctttttttttaaattactgaaacc
aactggaggaatttttctattcataagggctaatctggaaatctacatgg
cccatcatggttcatctgaaattcatgacctagggaaccagagaataata
ttaaaca
gaattctgcttccttctgcttggcattcctggtgcaccataacacccaga
accatgtgtataaaatttatgaattatttgatttactcccaatgtgggaa
actcttttgtatagacatattacaatttagttattatccactggatgctt
agactatttcattttcgagtacatacactgccatcaacactcttgaactt
gtttcctttgtgcacctgtctaaagttttctggtaggtaggacatgacct
gctgtgaatggcaaaggtttttgttttgttttgttttttttaaattaggt
ttttcaccttttatttaaggaaacaaaaccatattgaagaacattcccca
aatactgaggattagttaaatattatagagtcagtcttggcattaatgtc
agtcaacataagaatgagaactctgaagacagaaagcaagcacaagtcaa
atctctattctagaattatatgaagtagatgctgccctctacatttgtac
gaaaaataaattccatagctattacaatggttttctcatgcaacaaaact
tatttgatcaaataatctttacattgtgatcatagctctcccttttttat
gatgtcaatttacatattaataaatcttcatatacttagtagtaactgta
acactttaatttctaaaaattaggacaggttcgccatctatagctgttat
ataggattcatttaaatagacacaaatgtaaatcgaaaggcaaaggtttt
gagatatggatatttttcaaatttgctacatagcgacaagtcagttctcc
agacgtttatatccacactgtgcctccaactagggaggggacatgttccc
catgtctgtatgactgcctcagatttttttttttcttgtagagtaaaatt
tgtaaaatgatattttcattgtcgtttgagttttggcttcctggatagcc
agtcattaccatgaatttaacaaaagctgggggttaatagcttcaataca
ggatagtaacttacagttggttaactagaatttggcttctcgtagaagct
aacattattttagataagcatcttttttgcttaggtttgtcaagggcaaa
aattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164987252_164988389
seq2: B6Ng01-238F12.b_44_1200 (reverse)

seq1  TGTTTAATATT-TCTTGTGGT--CCTAGGTCATGAATTTCAGATGACCAT  47
      ||||||||||| |  | ||||  ||||||||||||||||||||||| |  
seq2  TGTTTAATATTATTCTCTGGTTCCCTAGGTCATGAATTTCAGATGAACCA  50

seq1  TGATGGG-CAT---GAGTTTCAGATAAGCATTAATGAATAG-AAAATTC-  91
      ||||||| |||   || || ||||| |||  | |||||||| ||||||| 
seq2  TGATGGGCCATGTAGATTTCCAGATTAGCCCTTATGAATAGAAAAATTCC  100

seq1  -TCAGTTGGTTTCAGTAATTT-TAAAAAAAGATTAA-TTTTATTTTTGTG  138
        |||||||||||||||||||  ||||||||||||| |||||||||||||
seq2  TCCAGTTGGTTTCAGTAATTTAAAAAAAAAGATTAATTTTTATTTTTGTG  150

seq1  TGCAT-GCATGCAAGTGGGTGCCTATG-AAAGGCAG-AAGAGGGCCTTGA  185
      ||||| ||||||||||||||||||||| |||||||| |||||||||||||
seq2  TGCATGGCATGCAAGTGGGTGCCTATGAAAAGGCAGAAAGAGGGCCTTGA  200

seq1  ATT-CCCTGGATCCAGAGTTGGTTGTAAGTCA-CCCAACA-TATGAGTAC  232
      ||| |||||||||||||||||||||||||||| ||||||| |||||||||
seq2  ATTCCCCTGGATCCAGAGTTGGTTGTAAGTCACCCCAACATTATGAGTAC  250

seq1  TGGGAATTTAACTCTGGCTCTCTGTAAGAGCAGTACTTACTTAACCACTG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTAACTCTGGCTCTCTGTAAGAGCAGTACTTACTTAACCACTG  300

seq1  AGCCATTTCTCTGGCCCTTATTTTGGAGCTTATGTCTGCTCTTTATAAAT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCTCTGGCCCTTATTTTGGAGCTTATGTCTGCTCTTTATAAAT  350

seq1  AAGAAAAACCCGGGCTGGTGAGATGGCTCAGTGCTTAAGAACACTGACTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACCCGGGCTGGTGAGATGGCTCAGTGCTTAAGAACACTGACTG  400

seq1  CTCTTCCAGAGGGTCTGAATTCAATTTGCAGC-AACATGGTGGCTCACCA  431
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTTCCAGAGGGTCTGAATTCAATTTGCAGCAAACATGGTGGCTCACCA  450

seq1  GCATCTATAAAGGGATCTGATGCCCTCTTCTGGCATGCAGGTGTACACGC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATAAAGGGATCTGATGCCCTCTTCTGGCATGCAGGTGTACACGC  500

seq1  AGACAGAGCACTTGTACATTAAAACAAAATTCATAAATAAATAAGAAAAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCACTTGTACATTAAAACAAAATTCATAAATAAATAAGAAAAA  550

seq1  CTTGTATGTTTGAGGGTTTTCTCAAGAAAAAAAAAGTTGACAATGGACAA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGTTTGAGGGTTTTCTCAAGAAAAAAAAAGTTGACAATGGACAA  600

seq1  AAAATACATTCTCTTTTTGAAAAAAAAGTTTGGGTGAGATTTGTAACAAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATTCTCTTTTTGAAAAAAAAGTTTGGGTGAGATTTGTAACAAT  650

seq1  CACAATTTAACCCCTTCTCCCAATAGTGGCATTAATACAGTCTTGAGGTC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTAACCCCTTCTCCCAATAGTGGCATTAATACAGTCTTGAGGTC  700

seq1  CTACTGTGTGTTAAGCATTGCACAAAGTAACATGTAACATATGATCATAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTGTTAAGCATTGCACAAAGTAACATGTAACATATGATCATAT  750

seq1  TTAAAACATGTACAGACAACCTAGATGATGTAAAAATAAATTTCTTTTCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATGTACAGACAACCTAGATGATGTAAAAATAAATTTCTTTTCA  800

seq1  GAAAAAGAAATTGGGCCTGACTAGACAAGAGGACCAAGCTTGGGCCACAT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAATTGGGCCTGACTAGACAAGAGGACCAAGCTTGGGCCACAT  850

seq1  GACTGAGGAGTTTGTGGGCCGTTTGTGGACCAGTATGTGCAGCGGGACAG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGAGTTTGTGGGCCGTTTGTGGACCAGTATGTGCAGCGGGACAG  900

seq1  CCTGGGGGAGGCCTTACTTGTCTGCAGGGACTGGGAACTCCATGAGCTGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGAGGCCTTACTTGTCTGCAGGGACTGGGAACTCCATGAGCTGA  950

seq1  AAGATGACCTTCTTCGGGGAAGCACGTGTTAACACGCTGATAACGTGCAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACCTTCTTCGGGGAAGCACGTGTTAACACGCTGATAACGTGCAG  1000

seq1  CATGACACTCTTCATCATGGGGGAAGGATTCCCACAGAGCTGCTCATAAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTCTTCATCATGGGGGAAGGATTCCCACAGAGCTGCTCATAAA  1050

seq1  TGTCTTCCACAATTTTAGACACCTGGAAGAAGAATTTCCTCCATCAACAG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCACAATTTTAGACACCTGGAAGAAGAATTTCCTCCATCAACAG  1100

seq1  AGATGTCAAGTTCCTTGTGCACTTTTAAAAGGGGCCATTTCTCTGTTACA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAAGTTCCTTGTGCACTTTTAAAAGGGGCCATTTCTCTGTTACA  1150

seq1  GGAATTC  1138
      |||||||
seq2  GGAATTC  1157

seq1: chr1_164838051_164839142
seq2: B6Ng01-238F12.g_71_1178

seq1  GAATTCTGCTTCCTTCTGCTTGGCATTCCTGGTGCACCATAACACCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCCTTCTGCTTGGCATTCCTGGTGCACCATAACACCCAGA  50

seq1  ACCATGTGTATAAAATTTATGAATTATTTGATTTACTCCCAATGTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGTATAAAATTTATGAATTATTTGATTTACTCCCAATGTGGGAA  100

seq1  ACTCTTTTGTATAGACATATTACAATTTAGTTATTATCCACTGGATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGTATAGACATATTACAATTTAGTTATTATCCACTGGATGCTT  150

seq1  AGACTATTTCATTTTCGAGTACATACACTGCCATCAACACTCTTGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTCATTTTCGAGTACATACACTGCCATCAACACTCTTGAACTT  200

seq1  GTTTCCTTTGTGCACCTGTCTAAAGTTTTCTGGTAGGTAGGACATGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTGTGCACCTGTCTAAAGTTTTCTGGTAGGTAGGACATGACCT  250

seq1  GCTGTGAATGGCAAAGGTTTTTGTTTTGTTTTGTTTTTTTTAAATTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAATGGCAAAGGTTTTTGTTTTGTTTTGTTTTTTTTAAATTAGGT  300

seq1  TTTTCACCTTTTATTTAAGGAAACAAAACCATATTGAAGAACATTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTTTTATTTAAGGAAACAAAACCATATTGAAGAACATTCCCCA  350

seq1  AATACTGAGGATTAGTTAAATATTATAGAGTCAGTCTTGGCATTAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAGGATTAGTTAAATATTATAGAGTCAGTCTTGGCATTAATGTC  400

seq1  AGTCAACATAAGAATGAGAACTCTGAAGACAGAAAGCAAGCACAAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATAAGAATGAGAACTCTGAAGACAGAAAGCAAGCACAAGTCAA  450

seq1  ATCTCTATTCTAGAATTATATGAAGTAGATGCTGCCCTCTACATTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATTCTAGAATTATATGAAGTAGATGCTGCCCTCTACATTTGTAC  500

seq1  GAAAAATAAATTCCATAGCTATTACAATGGTTTTCTCATGCAACAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAATTCCATAGCTATTACAATGGTTTTCTCATGCAACAAAACT  550

seq1  TATTTGATCAAATAATCTTTACATTGTGATCATAGCTCTCCCTTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCAAATAATCTTTACATTGTGATCATAGCTCTCCCTTTTTTAT  600

seq1  GATGTCAATTTACATATTAATAAATCTTCATATACTTAGTAGTAACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAATTTACATATTAATAAATCTTCATATACTTAGTAGTAACTGTA  650

seq1  ACACTTTAATTTCTAAAAATTAGGACAGGTTCGCCATCTATAGCTGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAATTTCTAAAAATTAGGACAGGTTCGCCATCTATAGCTGTTAT  700

seq1  ATAGGATTCATTTAAATAGACACAAATGTAAATCGAAAGGCAAAGGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTCATTTAAATAGACACAAATGTAAATCGAAAGGCAAAGGTTTT  750

seq1  GAGATATGGATATTTTTCAAATTTGCTACATAGCGACAAGTCAGTTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGGATATTTTTCAAATTTGCTACATAGCGACAAGTCAGTTCTCC  800

seq1  AGACGTTTATATCCACACTGTGCCTCCAACTA-GGAAGGGACATGTT-CC  848
      |||||||||||||||||||||||||||||||| ||| |||||||||| ||
seq2  AGACGTTTATATCCACACTGTGCCTCCAACTAGGGAGGGGACATGTTCCC  850

seq1  CATGTCTGTATGACTGCCTCAGA-TTTTTTTTTTCTTGTAGAGTAAAA-T  896
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CATGTCTGTATGACTGCCTCAGATTTTTTTTTTTCTTGTAGAGTAAAATT  900

seq1  TGTAAAATGATA-TTTCATTGTCGTTTTGAGTTTT-GCTTCCTGGATAGC  944
      |||||||||||| ||||||||||| |||||||||| ||||||||||||||
seq2  TGTAAAATGATATTTTCATTGTCG-TTTGAGTTTTGGCTTCCTGGATAGC  949

seq1  CAGTCAATACCATGAA-TTAACAAAAGCTTGGGG-TAATAGC-TCAATAC  991
      |||||| ||||||||| |||||||||||| |||| ||||||| |||||||
seq2  CAGTCATTACCATGAATTTAACAAAAGCTGGGGGTTAATAGCTTCAATAC  999

seq1  A-GATAGTAACTTACAGTTG--TTACTAGAA-TTGGCTTCTCGTAG-AGC  1036
      | ||||||||||||||||||  | ||||||| |||||||||||||| |||
seq2  AGGATAGTAACTTACAGTTGGTTAACTAGAATTTGGCTTCTCGTAGAAGC  1049

seq1  TAACAT--ATTTAGAT-AGCAACCTTTTTGCTTAGTTTTGTCAAGGGAAA  1083
      ||||||   ||||||| |||| | ||||||||||| ||||||||||| ||
seq2  TAACATTATTTTAGATAAGCATCTTTTTTGCTTAGGTTTGTCAAGGGCAA  1099

seq1  AAATAAAAA  1092
      |||| ||||
seq2  AAATTAAAA  1108