BAC Information

Click to search

BAC

Clone NameB6Ng01-238H20
Chromosome1 (Build37)
Map Location 107,971,827 - 108,094,998
singlet/doubletdoublet
Overlap geneEG435634, Phlpp
Upstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2
Downstream geneLOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238H20.bB6Ng01-238H20.g
ACCGA049171GA049172
length1,063962
definitionB6Ng01-238H20.b B6Ng01-238H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,971,827 - 107,972,889)(108,094,436 - 108,094,998)
sequence
gaattctcaagaaaggcatctggcatcaacctctggcctccacatatata
ggcccttacctccccaccccctgccacatgtactacaaagcaaagtctta
gggtgacccttgtatttttttttcagttggaggtataaccaaaatttgtg
gggtgttaatgaaaccctttccaaattgtttagattttagactctacaac
atctgggttccacgtgtcaagaggcaagtttagaaaaagtatgatagtgg
tttaaaacaccagccctaaagccaaaagactggtactaaaagcacctttc
acccttgatcatggggcagtttcttaatatctttgagctttacttgattt
ttttttttaaatttttggagacaaaatctcatgatcaaaaactggccttt
aactctatacagtagcaaaggctggccttgaagttctgatcctcctgcct
ccggctctggagtgctaggattgcaggtctatgctaccacacctggctta
tgataagcttggggtttcatgcgtggtaggcaagcactctaccaatggag
ctgcatactcctcctgagccttggatgctctgtgagatcagcaaggacac
ttgaatattttggcgcattgtataaagattatccttaaattattcaaatg
ctgatttctgaaccggcaaagatctgattacaggctggatttcggttaag
catctccttccttagtattttgtaagcagtgttctccatcaccttctggt
tggttaaaatgaaaagcctatggcctataacaaaaagcgggctagtaagg
taggacttctggagagagagagaaactcttgggaaagaggcagatgcaga
gattcagacaactgggacctggaggataaagaagcccggaaggaaaaaga
ggtaactaaccagccgtctttttctttgacgacagacagggagcttcaca
ttggagaaaggatgatctgggtagaggagacagagggacttttcacatca
tacgatctgcacccttaatttgtcatttattttattattagtctattgaa
atccagggtccat
gaattctgtcactgaagaaatgttacatgccgactctccatatggcagag
ttactagcagttagggttaagcctatttgcacaattatcagaaaaatact
aaacaaaacaatttaaagctggaaagatttggttgagctcaatttccaag
tttcaactggctttctctgctgcactgagtcttcgctacactgagtttcc
gctgcactgaggcctccagcaaagcagaaacaccacggcagtgggaacat
atggagcgctttgttcatctccgggtgggcaggaaacagtgaggaaaatg
gattgtggaccagatataaagttcaaagacatgtacttagtgactctacc
tcccaattagcttccattctgtaaagtttccagaacctctcaaaatactg
ctattagctaaagaccaacattcaagagatgatcccatgggtacactcat
atctaaaccataatgaactatctgacaaagtaggaacattttattagggt
tctctagagtaagagaatttatagaatctctctctctctctctctctctc
tctctctctctctctccacacacacacacaaacacacacacaatcacaca
cacaaaggggatttattagaatgacttataggctgcagtccagctaaatg
caacaatggctggctgtgaacagaaagtccaaaaatccagtaattgctca
gcctcagggctgggtgtctcagatggtcttcagtataggctagagtccca
aagacatagtagctctaaggccaatgaaggaatggatatgctagccaggg
caagggcaagcaggcaaagagcaaaaccctcttcctccatgtctttatac
aggcttccagcagaaggactgggcccagattaaagatgggatgttccata
ccaaaagtggacttacctacttcaaaccagccaaaaaatctctcatagac
tgcagttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107971827_107972889
seq2: B6Ng01-238H20.b_42_1104

seq1  GAATTCTCAAGAAAGGCATCTGGCATCAACCTCTGGCCTCCACATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGAAAGGCATCTGGCATCAACCTCTGGCCTCCACATATATA  50

seq1  GGCCCTTACCTCCCCACCCCCTGCCACATGTACTACAAAGCAAAGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTACCTCCCCACCCCCTGCCACATGTACTACAAAGCAAAGTCTTA  100

seq1  GGGTGACCCTTGTATTTTTTTTTCAGTTGGAGGTATAACCAAAATTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCCTTGTATTTTTTTTTCAGTTGGAGGTATAACCAAAATTTGTG  150

seq1  GGGTGTTAATGAAACCCTTTCCAAATTGTTTAGATTTTAGACTCTACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTAATGAAACCCTTTCCAAATTGTTTAGATTTTAGACTCTACAAC  200

seq1  ATCTGGGTTCCACGTGTCAAGAGGCAAGTTTAGAAAAAGTATGATAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTCCACGTGTCAAGAGGCAAGTTTAGAAAAAGTATGATAGTGG  250

seq1  TTTAAAACACCAGCCCTAAAGCCAAAAGACTGGTACTAAAAGCACCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACACCAGCCCTAAAGCCAAAAGACTGGTACTAAAAGCACCTTTC  300

seq1  ACCCTTGATCATGGGGCAGTTTCTTAATATCTTTGAGCTTTACTTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGATCATGGGGCAGTTTCTTAATATCTTTGAGCTTTACTTGATTT  350

seq1  TTTTTTTTAAATTTTTGGAGACAAAATCTCATGATCAAAAACTGGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAATTTTTGGAGACAAAATCTCATGATCAAAAACTGGCCTTT  400

seq1  AACTCTATACAGTAGCAAAGGCTGGCCTTGAAGTTCTGATCCTCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATACAGTAGCAAAGGCTGGCCTTGAAGTTCTGATCCTCCTGCCT  450

seq1  CCGGCTCTGGAGTGCTAGGATTGCAGGTCTATGCTACCACACCTGGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCTGGAGTGCTAGGATTGCAGGTCTATGCTACCACACCTGGCTTA  500

seq1  TGATAAGCTTGGGGTTTCATGCGTGGTAGGCAAGCACTCTACCAATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGCTTGGGGTTTCATGCGTGGTAGGCAAGCACTCTACCAATGGAG  550

seq1  CTGCATACTCCTCCTGAGCCTTGGATGCTCTGTGAGATCAGCAAGGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTCCTCCTGAGCCTTGGATGCTCTGTGAGATCAGCAAGGACAC  600

seq1  TTGAATATTTTGGCGCATTGTATAAAGATTATCCTTAAATTATTCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTTTGGCGCATTGTATAAAGATTATCCTTAAATTATTCAAATG  650

seq1  CTGATTTCTGAACCGGCAAAGATCTGATTACAGGCTGGATTTCGGTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGAACCGGCAAAGATCTGATTACAGGCTGGATTTCGGTTAAG  700

seq1  CATCTCCTTCCTTAGTATTTTGTAAGCAGTGTTCTCCATCACCTTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTCCTTAGTATTTTGTAAGCAGTGTTCTCCATCACCTTCTGGT  750

seq1  TGGTTAAAATGAAAAGCCTATGGCCTATAACAAAAAGCGGGCTAGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAATGAAAAGCCTATGGCCTATAACAAAAAGCGGGCTAGTAAGG  800

seq1  TAGGACTTCTGGAGAGAGAGAGAAACTC-TGGGAAAGAGGCAGATGCAGG  849
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TAGGACTTCTGGAGAGAGAGAGAAACTCTTGGGAAAGAGGCAGATGCA-G  849

seq1  AGATTCAGACAACTGGGACCTGGAGGATAAAGAAGGCCCGGAAGGAAAAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATTCAGACAACTGGGACCTGGAGGATAAAGAA-GCCCGGAAGGAAAAA  898

seq1  GAGGTAACTAACCAGCCGTC-TTTTCTTTGACGACAGACAGGGAGCTTCA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGTAACTAACCAGCCGTCTTTTTCTTTGACGACAGACAGGGAGCTTCA  948

seq1  CATT-GAGAAAGGATGATCTTGGTAGAGGAGACAGAAGGGACTTTTCACA  997
      |||| ||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CATTGGAGAAAGGATGATCTGGGTAGAGGAGACAG-AGGGACTTTTCACA  997

seq1  TCATACGATCTGCACCCTTAAATTTGTCATTTATTTTATTATTAGTCTA-  1046
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TCATACGATCTGCACCCTT-AATTTGTCATTTATTTTATTATTAGTCTAT  1046

seq1  TGAAATCCAGGGTCCAT  1063
      |||||||||||||||||
seq2  TGAAATCCAGGGTCCAT  1063

seq1: chr1_108094436_108094998
seq2: B6Ng01-238H20.g_68_630 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTATAAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTATAAATTCT  50

seq1  CTTACTCTAGAGAACCCTAATAAAATGTTCCTACTTTGTCAGATAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTAGAGAACCCTAATAAAATGTTCCTACTTTGTCAGATAGTTCA  100

seq1  TTATGGTTTAGATATGAGTGTACCCATGGGATCATCTCTTGAATGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTTAGATATGAGTGTACCCATGGGATCATCTCTTGAATGTTGGT  150

seq1  CTTTAGCTAATAGCAGTATTTTGAGAGGTTCTGGAAACTTTACAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTAATAGCAGTATTTTGAGAGGTTCTGGAAACTTTACAGAATGG  200

seq1  AAGCTAATTGGGAGGTAGAGTCACTAAGTACATGTCTTTGAACTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATTGGGAGGTAGAGTCACTAAGTACATGTCTTTGAACTTTATAT  250

seq1  CTGGTCCACAATCCATTTTCCTCACTGTTTCCTGCCCACCCGGAGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCACAATCCATTTTCCTCACTGTTTCCTGCCCACCCGGAGATGAA  300

seq1  CAAAGCGCTCCATATGTTCCCACTGCCGTGGTGTTTCTGCTTTGCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGCTCCATATGTTCCCACTGCCGTGGTGTTTCTGCTTTGCTGGAG  350

seq1  GCCTCAGTGCAGCGGAAACTCAGTGTAGCGAAGACTCAGTGCAGCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTGCAGCGGAAACTCAGTGTAGCGAAGACTCAGTGCAGCAGAGA  400

seq1  AAGCCAGTTGAAACTTGGAAATTGAGCTCAACCAAATCTTTCCAGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTGAAACTTGGAAATTGAGCTCAACCAAATCTTTCCAGCTTTA  450

seq1  AATTGTTTTGTTTAGTATTTTTCTGATAATTGTGCAAATAGGCTTAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTGTTTAGTATTTTTCTGATAATTGTGCAAATAGGCTTAACCC  500

seq1  TAACTGCTAGTAACTCTGCCATATGGAGAGTCGGCATGTAACATTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTAGTAACTCTGCCATATGGAGAGTCGGCATGTAACATTTCTTC  550

seq1  AGTGACAGAATTC  563
      |||||||||||||
seq2  AGTGACAGAATTC  563