BAC Information

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BAC

Clone NameB6Ng01-238J15
Chromosome1 (Build37)
Map Location 191,240,573 - 191,241,745
singlet/doubletsinglet
Overlap genenone
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238J15.bB6Ng01-238J15.g
ACCGA049251GA049252
length1,181130
definitionB6Ng01-238J15.b B6Ng01-238J15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgttgcccgggtgtctgtacctccaattccaaggactctaag
accttctgccctccatggatgctgggtaggcacatggaacatagacataa
gtgtagcagggcacccgcacgcataaattaataaaacaaatgtagttatt
tggttgtaggatttgaaagccacaaaactagattctcccgaggagattcc
cctgaagagatatctactctgcagatttgacctctgacaaagacctccag
tgccgtgtggaaatgggttagaagtgcagattctcaggtgccctccctgt
ctttggaggagaaagtgtgggttctcatttgtgttctaggagaactggct
tgtgggtggtggtagagaatgtttttctgctgactgttttgagcatttcc
cttcttcacaacacccccccatcaccatcatcaccatcatcaccatcacc
atcatcaccatcatcaccatcatcaccaccaccaccatcatcgttgtcct
gtctcagtctaccccctacatcgagtttgcttccctactgacctgtcttc
tgttttttcctcaccatttccatctttaaacagaaaacaatagttttgaa
catcttccttgagttccctctctcttccagtcagtgtctgtcccattttc
tccttctttttatagcacagcccagaatagttctgtaaaactcctctctg
tctttcttttgagtacacagcaccaggccttcccactaatatgccactaa
gtggctctttccgaggtcgctcgctctcagtgacctcgaaaggagacatt
cactcccaactgtccctgatccagccgcggcagttgaacttttattttac
tctgtcaaaatcttttaacttctcttgattcttccttggtctcctttggt
tgtatcttcctatgttttaatttctaaatatgtctcaatgttcataccta
tatgacttcatctgcctctgataattctatcccttaacccaactgttaca
gtgaattctagaagtccaacgtgactctagagttcactataaaacattgg
ttccttaaacagatttcttgggaaacacggcagcttcaaagttctgcaac
attccctcttagaactcccttcccaacaatagtccccagttcagtgtatc
tctaatctttgttgtgtaaggcttcaaacac

aaggcttacctgagctaaagagtaagttcaaagccagcctgggtaaatta
gcaaagcattgtctcaaaactaaaagaaaaggaggaggggggatgaaggc
aggagggacaggggaaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191240573_191241745
seq2: B6Ng01-238J15.b_42_1222 (reverse)

seq1  GTGTTTGAGGCC-TACACAACAAAAGGATGAGA-TTACACTG-ACTGGGG  47
      |||||||| ||| |||||||||||  ||| |||  ||||||| |||||||
seq2  GTGTTTGAAGCCTTACACAACAAA--GATTAGAGATACACTGAACTGGGG  48

seq1  -CTA-TGTTGG--AGGGAG-TCTAAGA-GGAATG-TGCAGGACTTTGAAG  90
       ||| ||||||  |||||| ||||||| |||||| ||||| |||||||||
seq2  ACTATTGTTGGGAAGGGAGTTCTAAGAGGGAATGTTGCAGAACTTTGAAG  98

seq1  CTGGCCGTTGTTCCCAAGAAATCTG-TTAAGGACCAAATG-TTTATAGTG  138
      || |||||  ||||||||||||||| ||||||| | |||| |||||||||
seq2  CT-GCCGTGTTTCCCAAGAAATCTGTTTAAGGAACCAATGTTTTATAGTG  147

seq1  AACTCTAGAGTCCACGTTGGAC-TCTAGAATTCACTGTAACAGTTGGGTT  187
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  AACTCTAGAGT-CACGTTGGACTTCTAGAATTCACTGTAACAGTTGGGTT  196

seq1  AAGGGATAGAATTTATCAGAGGCAGATGAAGTCATATAGGTATGAAACAT  237
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AAGGGATAGAA-TTATCAGAGGCAGATGAAGTCATATAGGTATG-AACAT  244

seq1  TGAGACATATTTAGAATTTAAAACATAGGAAGATACAACCAAAGGAGACC  287
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGACATATTTAGAAATTAAAACATAGGAAGATACAACCAAAGGAGACC  294

seq1  AAGGAAGAATCAAGAGAAGTTAAAAGATTTTGACAGAGTAAAATAAAAGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAATCAAGAGAAGTTAAAAGATTTTGACAGAGTAAAATAAAAGT  344

seq1  TCAACTGCCGCGGCTGGATCAGGGACAGTTGGGAGTGAATGTCTCC-TTC  386
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAACTGCCGCGGCTGGATCAGGGACAGTTGGGAGTGAATGTCTCCTTTC  394

seq1  GAGGTCACTGAGAGCGAGCGACCTCGGAAAGAGCCACTTAGTGGCATATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTGAGAGCGAGCGACCTCGGAAAGAGCCACTTAGTGGCATATT  444

seq1  AGTGGGAAGGCCTGGTGCTGTGTACTCAAAAGAAAGACAGAGAGGAGTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGGCCTGGTGCTGTGTACTCAAAAGAAAGACAGAGAGGAGTTT  494

seq1  TACAGAACTATTCTGGGCTGTGCTATAAAAAGAAGGAGAAAATGGGACAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTATTCTGGGCTGTGCTATAAAAAGAAGGAGAAAATGGGACAG  544

seq1  ACACTGACTGGAAGAGAGAGGGAACTCAAGGAAGATGTTCAAAACTATTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTGGAAGAGAGAGGGAACTCAAGGAAGATGTTCAAAACTATTG  594

seq1  TTTTCTGTTTAAAGATGGAAATGGTGAGGAAAAAACAGAAGACAGGTCAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTTAAAGATGGAAATGGTGAGGAAAAAACAGAAGACAGGTCAG  644

seq1  TAGGGAAGCAAACTCGATGTAGGGGGTAGACTGAGACAGGACAACGATGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGCAAACTCGATGTAGGGGGTAGACTGAGACAGGACAACGATGA  694

seq1  TGGTGGTGGTGGTGATGATGGTGATGATGGTGATGATGGTGATGGTGATG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGTGGTGATGATGGTGATGATGGTGATGATGGTGATGGTGATG  744

seq1  ATGGTGATGATGGTGATGGGGGGGTGTTGTGAAGAAGGGAAATGCTCAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATGATGGTGATGGGGGGGTGTTGTGAAGAAGGGAAATGCTCAAA  794

seq1  ACAGTCAGCAGAAAAACATTCTCTACCACCACCCACAAGCCAGTTCTCCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCAGAAAAACATTCTCTACCACCACCCACAAGCCAGTTCTCCT  844

seq1  AGAACACAAATGAGAACCCACACTTTCTCCTCCAAAGACAGGGAGGGCAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAATGAGAACCCACACTTTCTCCTCCAAAGACAGGGAGGGCAC  894

seq1  CTGAGAATCTGCACTTCTAACCCATTTCCACACGGCACTGGAGGTCTTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCTGCACTTCTAACCCATTTCCACACGGCACTGGAGGTCTTTG  944

seq1  TCAGAGGTCAAATCTGCAGAGTAGATATCTCTTCAGGGGAATCTCCTCGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCAAATCTGCAGAGTAGATATCTCTTCAGGGGAATCTCCTCGG  994

seq1  GAGAATCTAGTTTTGTGGCTTTCAAATCCTACAACCAAATAACTACATTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTAGTTTTGTGGCTTTCAAATCCTACAACCAAATAACTACATTT  1044

seq1  GTTTTATTAATTTATGCGTGCGGGTGCCCTGCTACACTTATGTCTATGTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTAATTTATGCGTGCGGGTGCCCTGCTACACTTATGTCTATGTT  1094

seq1  CCATGTGCCTACCCAGCATCCATGGAGGGCAGAAGGTCTTAGAGTCCTTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCCTACCCAGCATCCATGGAGGGCAGAAGGTCTTAGAGTCCTTG  1144

seq1  GAATTGGAGGTACAGACACCCGGGCAACATAGAATTC  1173
      |||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAGGTACAGACACCCGGGCAACATAGAATTC  1181


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