BAC Information

Click to search

BAC

Clone NameB6Ng01-238J22
Chromosome1 (Build37)
Map Location 51,657,008 - 51,801,088
singlet/doubletdoublet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238J22.bB6Ng01-238J22.g
ACCGA049265GA049266
length1,1581,086
definitionB6Ng01-238J22.b B6Ng01-238J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,799,937 - 51,801,088)(51,657,008 - 51,658,104)
sequence
gaattcacatttagatgtggtggggaatggtactacaagtgttttcaagt
actatttaaggtactcattagacagtgcggaccatgtgaactcaaaagac
acccaggacaatcctttcatttaacagagaagaaaaactgaggcccagag
gtactggatagctgctggagcttgttgggttctggcaagactaacctggt
tttgttccactcttaagagtccccatagacaattaggaaaagttgttcct
actcacacttggaagggttcattctgaattcacagtgcgtagttgaatgg
gacactagcccactggagcatgtggctctggcaggccttgcccttctccc
cagttccctctgccttgctaaaaacctttacattgcattcctaaagctag
ccccaggtctctttccttatttggccacttcccccccccctcccccaggc
tgactatcccaaggtccagctatccaaagtattgaactccagcaagcaaa
agcgcctaattaacctaattaacatgcccaattaaattaaacactttatc
ctaatatgggtttccccttatacctttataaactgccattttcctgttgg
ccacatctgactcccctatccagagacagtcctttaacccagggcaaata
ccccctctcccttgaacccttccccttcccctgcctcctgtctcctgtct
tttcccttattccttaccttctgcccctctaggtcaaataaactcctttc
tgctggaacttggtcttgggccctgagcctataccacttcctctccatat
tgatgggaggtgctgccacacaatataggcgcagaagtgggacccaatgt
ggaaacaaaagctgcaattctggaatggggcaatgactcaactaaccgct
tctctgattctaactctccatccttcctgaactcaccaggcctcatctgt
ccttatccaagtgtcctggctggttttatgccatctttacacaagccaga
gtcatcagagaggaggggctgcaattggggaaacgccttcaaagcctgtc
cgcaggcctgggggagcaatttccttaatgccagaatttatgagtgaagg
ctagaatgaaagcctggcttggtcgtgtccttggttcaatttagaaaatg
ggcctgag
gaattcttggttggagctgataatgtttagaatacgaagcatgcctatct
tcaggttgttgccttgactccccagaaacctgacactgtaagctgaaaga
ctcctccccccccacccccccagagttgaatttggtcaggttattggtca
cagctgcagaagtcagcagagacaatcatgggggtgtctagctgcagaat
catgttccacctgcgtccctgtcccgcggctgtacatcttccttttggcc
tctagttgatctttccttcctcttctatttcaaatttcttatctttccct
ttgaagatgaacattctttaaaagaaaccaggacgttttagatgagaagg
gctacttttgaaacaaaagaaatctttcaattgcatctctttccatgact
ctcaaggttgcatattgtgacaagaagattgtttgatagcgacaagggag
atgtcgccctctaatggagaagacattttcaggcacttaactgctcagct
atgtcatcctgggtcagtcagctgtttacgctgacagcgcttcatcaatc
acactctctcatatttttttcctcaaaccaaatttcgattctatatttta
ccttgagaacgagttactcactttgacttctctgtttcctcagggaattt
tttttaataaattatgttcattgttattaagttgatattcagaaagtata
tagagatgagaacaataaaatcttccaactcaaaatagcattaacctctt
ggttttttttttttaatgtcctaaggatccaatccatagcttcgtgaatg
ctagacaaacactctcccactgagctacatccctggtaacatttaatcct
gtgactctatcacagagctacatccccagtaacatgtagacactgtgaga
cttctctgcagccacatgaatgaacatatagcacatacattttgggatgc
ttttatttctatttattttatttttatacagtatttctgattatggttcc
ccttcctaacttctcataatcctccctacttccttccttctggatcacac
tttcttgtattcttattagaagcagccttctaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51799937_51801088
seq2: B6Ng01-238J22.b_47_1204 (reverse)

seq1  CTCA-GCCCATTTTCT-TATTGAACCCAGG--ACCACCAGCCCAAGC-TT  45
      |||| |||||||||||  |||||||| |||  || ||||  ||| || ||
seq2  CTCAGGCCCATTTTCTAAATTGAACCAAGGACACGACCAAGCCAGGCTTT  50

seq1  CATTCTAACCCTCACTCATAAA-TCTTGCATTAAGAAAATGCCTCCCCCA  94
      ||||||| || ||||||||||| ||| |||||||| ||||  ||||||||
seq2  CATTCTAGCCTTCACTCATAAATTCTGGCATTAAGGAAATTGCTCCCCCA  100

seq1  GGCTTGCCGACAGGCTT--GAGGCGTTTTCCCAATTGCAGCCCCCTCCTC  142
      ||| ||| |||||||||   |||||||| ||||||||||| |||||||||
seq2  GGCCTGCGGACAGGCTTTGAAGGCGTTTCCCCAATTGCAG-CCCCTCCTC  149

seq1  TCTGATGACTCTGGCTTGTGTAAAGATGGCATAAAACCCAGCCAGGACAC  192
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGATGACTCTGGCTTGTGTAAAGATGGCATAAAA-CCAGCCAGGACAC  198

seq1  TTGGATAAGGACAGATGAGGCCTGGTGAGTTCAGGAAGGATGGAGAGTTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAGGACAGATGAGGCCTGGTGAGTTCAGGAAGGATGGAGAGTTA  248

seq1  GAATCAGAGAAGCGGTTAGTTGAGTCATTGCCCCATTCCAGAATTGCAGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAGAAGCGGTTAGTTGAGTCATTGCCCCATTCCAGAATTGCAGC  298

seq1  TTTTGTTTCCACATTGGGTCCCACTTCTGCGCCTATATTGTGTGGCAGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCCACATTGGGTCCCACTTCTGCGCCTATATTGTGTGGCAGCA  348

seq1  CCTCCCATCAATATGGAGAGGAAGTGGTATAGGCTCAGGGCCCAAGACCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATCAATATGGAGAGGAAGTGGTATAGGCTCAGGGCCCAAGACCA  398

seq1  AGTTCCAGCAGAAAGGAGTTTATTTGACCTAGAGGGGCAGAAGGTAAGGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCAGAAAGGAGTTTATTTGACCTAGAGGGGCAGAAGGTAAGGA  448

seq1  ATAAGGGAAAAGACAGGAGACAGGAGGCAGGGGAAGGGGAAGGGTTCAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAAAGACAGGAGACAGGAGGCAGGGGAAGGGGAAGGGTTCAAG  498

seq1  GGAGAGGGGGTATTTGCCCTGGGTTAAAGGACTGTCTCTGGATAGGGGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGGTATTTGCCCTGGGTTAAAGGACTGTCTCTGGATAGGGGAG  548

seq1  TCAGATGTGGCCAACAGGAAAATGGCAGTTTATAAAGGTATAAGGGGAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTGGCCAACAGGAAAATGGCAGTTTATAAAGGTATAAGGGGAAA  598

seq1  CCCATATTAGGATAAAGTGTTTAATTTAATTGGGCATGTTAATTAGGTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTAGGATAAAGTGTTTAATTTAATTGGGCATGTTAATTAGGTTA  648

seq1  ATTAGGCGCTTTTGCTTGCTGGAGTTCAATACTTTGGATAGCTGGACCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCGCTTTTGCTTGCTGGAGTTCAATACTTTGGATAGCTGGACCTT  698

seq1  GGGATAGTCAGCCTGGGGGAGGGGGGGGGGAAGTGGCCAAATAAGGAAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGTCAGCCTGGGGGAGGGGGGGGGGAAGTGGCCAAATAAGGAAAG  748

seq1  AGACCTGGGGCTAGCTTTAGGAATGCAATGTAAAGGTTTTTAGCAAGGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGGGCTAGCTTTAGGAATGCAATGTAAAGGTTTTTAGCAAGGCA  798

seq1  GAGGGAACTGGGGAGAAGGGCAAGGCCTGCCAGAGCCACATGCTCCAGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACTGGGGAGAAGGGCAAGGCCTGCCAGAGCCACATGCTCCAGTG  848

seq1  GGCTAGTGTCCCATTCAACTACGCACTGTGAATTCAGAATGAACCCTTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGTCCCATTCAACTACGCACTGTGAATTCAGAATGAACCCTTCC  898

seq1  AAGTGTGAGTAGGAACAACTTTTCCTAATTGTCTATGGGGACTCTTAAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGTAGGAACAACTTTTCCTAATTGTCTATGGGGACTCTTAAGA  948

seq1  GTGGAACAAAACCAGGTTAGTCTTGCCAGAACCCAACAAGCTCCAGCAGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAAAACCAGGTTAGTCTTGCCAGAACCCAACAAGCTCCAGCAGC  998

seq1  TATCCAGTACCTCTGGGCCTCAGTTTTTCTTCTCTGTTAAATGAAAGGAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTACCTCTGGGCCTCAGTTTTTCTTCTCTGTTAAATGAAAGGAT  1048

seq1  TGTCCTGGGTGTCTTTTGAGTTCACATGGTCCGCACTGTCTAATGAGTAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGGTGTCTTTTGAGTTCACATGGTCCGCACTGTCTAATGAGTAC  1098

seq1  CTTAAATAGTACTTGAAAACACTTGTAGTACCATTCCCCACCACATCTAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAGTACTTGAAAACACTTGTAGTACCATTCCCCACCACATCTAA  1148

seq1  ATGTGAATTC  1152
      ||||||||||
seq2  ATGTGAATTC  1158

seq1: chr1_51657008_51658104
seq2: B6Ng01-238J22.g_67_1152

seq1  GAATTCTTGGTTGGAGCTGATAATGTTTAGAATACGAAGCATGCCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTGGAGCTGATAATGTTTAGAATACGAAGCATGCCTATCT  50

seq1  TCAGGTTGTTGCCTTGACTCCCCAGAAACCTGACACTGTAAGCTGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGTTGCCTTGACTCCCCAGAAACCTGACACTGTAAGCTGAAAGA  100

seq1  CTCCTCCCCCCCCACCCCCCCAGAGTTGAATTTGGTCAGGTTATTGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCCCCCACCCCCCCAGAGTTGAATTTGGTCAGGTTATTGGTCA  150

seq1  CAGCTGCAGAAGTCAGCAGAGACAATCATGGGGGTGTCTAGCTGCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGAAGTCAGCAGAGACAATCATGGGGGTGTCTAGCTGCAGAAT  200

seq1  CATGTTCCACCTGCGTCCCTGTCCCGCGGCTGTACATCTTCCTTTTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCACCTGCGTCCCTGTCCCGCGGCTGTACATCTTCCTTTTGGCC  250

seq1  TCTAGTTGATCTTTCCTTCCTCTTCTATTTCAAATTTCTTATCTTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGATCTTTCCTTCCTCTTCTATTTCAAATTTCTTATCTTTCCCT  300

seq1  TTGAAGATGAACATTCTTTAAAAGAAACCAGGACGTTTTAGATGAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGAACATTCTTTAAAAGAAACCAGGACGTTTTAGATGAGAAGG  350

seq1  GCTACTTTTGAAACAAAAGAAATCTTTCAATTGCATCTCTTTCCATGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTTGAAACAAAAGAAATCTTTCAATTGCATCTCTTTCCATGACT  400

seq1  CTCAAGGTTGCATATTGTGACAAGAAGATTGTTTGATAGCGACAAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTTGCATATTGTGACAAGAAGATTGTTTGATAGCGACAAGGGAG  450

seq1  ATGTCGCCCTCTAATGGAGAAGACATTTTCAGGCACTTAACTGCTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGCCCTCTAATGGAGAAGACATTTTCAGGCACTTAACTGCTCAGCT  500

seq1  ATGTCATCCTGGGTCAGTCAGCTGTTTACGCTGACAGCGCTTCATCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCCTGGGTCAGTCAGCTGTTTACGCTGACAGCGCTTCATCAATC  550

seq1  ACACTCTCTCATATTTTTTTCCTCAAACCAAATTTCGATTCTATATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCTCATATTTTTTTCCTCAAACCAAATTTCGATTCTATATTTTA  600

seq1  CCTTGAGAACGAGTTACTCACTTTGACTTCTCTGTTTCCTCAGGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAACGAGTTACTCACTTTGACTTCTCTGTTTCCTCAGGGAATTT  650

seq1  TTTTTAATAAATTATGTTCATTGTTATTAAGTTGATATTCAGAAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAAATTATGTTCATTGTTATTAAGTTGATATTCAGAAAGTATA  700

seq1  TAGAGATGAGAACAATAAAATCTTCCAACTCAAAATAGCATTAACCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAGAACAATAAAATCTTCCAACTCAAAATAGCATTAACCTCTT  750

seq1  GG-TTTTTTTTTTTAATGTCCTAAGGATCCAATCCATAGCTTCGTGAATG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTAATGTCCTAAGGATCCAATCCATAGCTTCGTGAATG  800

seq1  CTAGACAAACACTCTCCCACTGAGCTACATCCCTGGTAACATTTAATCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAAACACTCTCCCACTGAGCTACATCCCTGGTAACATTTAATCCT  850

seq1  GTGACTCTATCACAGAGCTACATCCCCAGTAACATGTAGACACTGTGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTATCACAGAGCTACATCCCCAGTAACATGTAGACACTGTGAGA  900

seq1  CTTCTCTGCAGCCACATGAATGAACATATAAGCACATACAATTTTGGATT  949
      ||||||||||||||||||||||||||||| ||||||||| |||||||  |
seq2  CTTCTCTGCAGCCACATGAATGAACATAT-AGCACATAC-ATTTTGGGAT  948

seq1  GCTTTTATTTCTATTTTATTTTAATTTTTAATACAGTATTTCTGATTATG  999
      ||||||||||||| |||||||||  |||| ||||||||||||||||||||
seq2  GCTTTTATTTCTA-TTTATTTTA--TTTTTATACAGTATTTCTGATTATG  995

seq1  GTTTCCCCTTCCCTAACTTCTCCAATATCCTCCCTACTTCCCCTCCTTTC  1049
      | |||||||| |||||||||| ||  |||||||||||||  ||| | |||
seq2  G-TTCCCCTT-CCTAACTTCT-CATAATCCTCCCTACTT--CCTTCCTTC  1040

seq1  TGAATCCACACCCTTTC-TGTA-TCTTATTAGAAAGCAGGCATCTAGGAA  1097
      || ||   ||| ||||| |||| ||||||||| |||||| | ||||||||
seq2  TGGAT---CACACTTTCTTGTATTCTTATTAG-AAGCAGCCTTCTAGGAA  1086