BAC Information

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BAC

Clone NameB6Ng01-238M19
Chromosome1 (Build37)
Map Location 103,560,121 - 103,642,100
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238M19.bB6Ng01-238M19.g
ACCGA049400GA049401
length1,0961,054
definitionB6Ng01-238M19.b B6Ng01-238M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,640,995 - 103,642,100)(103,560,121 - 103,561,188)
sequence
gaattctatactaagcagacaggcaaaaagacagaaacagaggcacagga
tgattccaggatttaggaaaaaagagaggaagacccctggggctttacag
ttaaccaatttggctgaaacttaatagttcaaatgagagattgatcttgt
ctaagagattaaaatggatgtttctgaagaatggtacttacttttaattt
caggccttcatatgcacaagccaacttttacaatgagcctaagaattcac
tcacaaatacagagagagagagagagaaagagagagagagagagaaagag
agagagagagagagagagagagagagagagagagagagagagagagagca
atattatagcaacaataaaaaaatccagaattctgcaattacagggaaca
ttggttttcttcttgtggaacagtgaatccaggtttcagtatccttttcc
atactaacgtctgcatttgaggacaggttcttttccactatatagagcaa
aactcaaactaagccactcaactaaaaaaggttaacactggacctatatc
acatttccagccaaggaatgttagactaaagatttttatatttactttcg
cagatatgtgtacttatttctattatcaatctttaaacttggaagataga
aatgaattgcattacattattgagtaaaagattttgtttaaaataaagag
aaatgtatctggaaaggaaatttgacagtagatgtttggactctgaagat
acatatctttagtatttgaatgaattgagcctgaactccattatttactt
ttttcctctttctattttcttaagaatacaattctgttattttctttatt
tcttgttatgggtttttatttctttaataagaaattattgttttcccaac
cagacacttcagtaacacagatacttttgttagagcaatataaaaatgct
acaatgaaagataggaccattagttaatctaaatcaaagtaatttgccta
tgttcctctgttgagagagttgaatgcaaacattaagtattaacctgaac
ctcccccccaagactgaagccagcgtagacagcttgaccgtgttgt
gaattcttcgatattgaagttcatttacttataaattttgtatttattta
tccattggggagaaaaacaccaatgctataatatgcctgtgtagttcaga
gaacagcttgtaagaaatcatttctcttcttcaactttgtgggtttgggg
atagaactcagatcatcatctctggtagcaaacaccatctaagatgttgt
tattcgcttaaaattaatgaaagtctgttttgaaaacagtggtgtcttaa
atgaattttcaacagcaagtattcaaggggtttaactgaggggacttaat
ttagttttcctaaattaagagaccttgtccttatgtccctaaacttctca
aattcgttctaaactagatataaatatgaggaaatggtgaggaaatacaa
tacattattgtccccagtaagtctgtgccttgatcacaatatgtgcagat
tggtaaatgctgaagttcagtctttctgcaatggtcatctgcatcttttc
ttgttttctgttccttctattataataaagttaatggatttacctaatcc
agaaatttaattcgttattgtgcacatactttaaatatcctgtgaataat
gttgcactctgtgtcatatttaaaaaaaaaaaggacatctcaatcttact
gcacaagccattgctgctctattcaggaatttttcccctgtgcccatatc
ttcgaggcttttccccattttctcctctataagtttcacagtctctggtt
ttatatggagttccttgatctacttagatttgaccttagtacaaggagat
aggaatggatcaattcacattcttctacgtgataactgccagttgtgcca
gcgcctttggtgaaaatgctgtctttttccaatggatgggtttgctccct
tgtcaaaaaacaagtgtccatagtgtgtgggtcatttctgggtcttcaat
tctattccatgtctactgtctttgctataccagtaccatgcagtttttat
cacatgctctgtagtacagctttagtcaagcatgtgattccaccagagtt
cttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103640995_103642100
seq2: B6Ng01-238M19.b_45_1140 (reverse)

seq1  ACAACACAGTCAAGCCTGGCTCAGCTGGCTTCAGTCTGTGGGGGGAGGTT  50
      ||||||| |||||| ||| ||  ||||||||||||||  |||||||||||
seq2  ACAACACGGTCAAG-CTGTCTACGCTGGCTTCAGTCTTGGGGGGGAGGTT  49

seq1  ACAGTGTATACTTAATTGTTTGCATTC-ACTCTCCAAACAGAGGAAACAT  99
         ||  |||||||| ||||||||||| ||||||  |||||||| |||||
seq2  CAGGTTAATACTTAA-TGTTTGCATTCAACTCTCTCAACAGAGG-AACAT  97

seq1  AAGCAATTTACTTTGATTTAGATTTAACTAATGGTCCTTAATCTTTCATT  149
      | |||| ||||||||||||||| |||||||||||||||  |||||||| |
seq2  AGGCAAATTACTTTGATTTAGA-TTAACTAATGGTCCT--ATCTTTCA-T  143

seq1  TGTAGCATTTTTTATAATTGCTCTAAC-AAAGTATCTGTGTTACTGAAGT  198
      ||||||| ||||||| ||||||||||| ||||||||||||||||||||||
seq2  TGTAGCA-TTTTTAT-ATTGCTCTAACAAAAGTATCTGTGTTACTGAAGT  191

seq1  GTCTGGTTGGGAAAACAATAATTTCTTTATTAAAAGAAAATAAAAACCAA  248
      ||||||||||||||||||||||||| ||||||||   ||||||||||| |
seq2  GTCTGGTTGGGAAAACAATAATTTC-TTATTAAA--GAAATAAAAACCCA  238

seq1  TAACAAGAAAATAAAGAAAATAACAGAATTGTATTCTTAAGAAAATAGAA  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAG-AAATAAAGAAAATAACAGAATTGTATTCTTAAGAAAATAGAA  287

seq1  AGAGG-AAAAAGTAAATAATGGAGTTCAGGCTCAATTCATTCAAATACTA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAAAAGTAAATAATGGAGTTCAGGCTCAATTCATTCAAATACTA  337

seq1  AAGATATGTATCTTCAGAGTCCAAACATCTACTGTCAAATTTCCTTTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGTATCTTCAGAGTCCAAACATCTACTGTCAAATTTCCTTTCCA  387

seq1  GATACATTTCTCTTTATTTTAAACAAAATCTTTTACTCAATAATGTAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTTCTCTTTATTTTAAACAAAATCTTTTACTCAATAATGTAATG  437

seq1  CAATTCATTTCTATCTTCCAAGTTTAAAGATTGATAATAGAAATAAGTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATTTCTATCTTCCAAGTTTAAAGATTGATAATAGAAATAAGTAC  487

seq1  ACATATCTGCGAAAGTAAATATAAAAATCTTTAGTCTAACATTCCTTGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGCGAAAGTAAATATAAAAATCTTTAGTCTAACATTCCTTGGC  537

seq1  TGGAAATGTGATATAGGTCCAGTGTTAACCTTTTTTAGTTGAGTGGCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTGATATAGGTCCAGTGTTAACCTTTTTTAGTTGAGTGGCTTA  587

seq1  GTTTGAGTTTTGCTCTATATAGTGGAAAAGAACCTGTCCTCAAATGCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTTTGCTCTATATAGTGGAAAAGAACCTGTCCTCAAATGCAGA  637

seq1  CGTTAGTATGGAAAAGGATACTGAAACCTGGATTCACTGTTCCACAAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTATGGAAAAGGATACTGAAACCTGGATTCACTGTTCCACAAGAA  687

seq1  GAAAACCAATGTTCCCTGTAATTGCAGAATTCTGGATTTTTTTATTGTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAATGTTCCCTGTAATTGCAGAATTCTGGATTTTTTTATTGTTG  737

seq1  CTATAATATTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATATTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  787

seq1  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTG  837

seq1  TATTTGTGAGTGAATTCTTAGGCTCATTGTAAAAGTTGGCTTGTGCATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGAGTGAATTCTTAGGCTCATTGTAAAAGTTGGCTTGTGCATAT  887

seq1  GAAGGCCTGAAATTAAAAGTAAGTACCATTCTTCAGAAACATCCATTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTGAAATTAAAAGTAAGTACCATTCTTCAGAAACATCCATTTTA  937

seq1  ATCTCTTAGACAAGATCAATCTCTCATTTGAACTATTAAGTTTCAGCCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAGACAAGATCAATCTCTCATTTGAACTATTAAGTTTCAGCCAA  987

seq1  ATTGGTTAACTGTAAAGCCCCAGGGGTCTTCCTCTCTTTTTTCCTAAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAACTGTAAAGCCCCAGGGGTCTTCCTCTCTTTTTTCCTAAATC  1037

seq1  CTGGAATCATCCTGTGCCTCTGTTTCTGTCTTTTTGCCTGTCTGCTTAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCATCCTGTGCCTCTGTTTCTGTCTTTTTGCCTGTCTGCTTAGT  1087

seq1  ATAGAATTC  1106
      |||||||||
seq2  ATAGAATTC  1096

seq1: chr1_103560121_103561188
seq2: B6Ng01-238M19.g_66_1119

seq1  GAATTCTTCGATATTGAAGTTCATTTACTTATAAATTTTGTATTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGATATTGAAGTTCATTTACTTATAAATTTTGTATTTATTTA  50

seq1  TCCATTGGGGAGAAAAACACCAATGCTATAATATGCCTGTGTAGTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGGAGAAAAACACCAATGCTATAATATGCCTGTGTAGTTCAGA  100

seq1  GAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTTTGTGGGTTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTTTGTGGGTTTGGGG  150

seq1  ATAGAACTCAGATCATCATCTCTGGTAGCAAACACCATCTAAGATGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTCAGATCATCATCTCTGGTAGCAAACACCATCTAAGATGTTGT  200

seq1  TATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAACAGTGGTGTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAACAGTGGTGTCTTAA  250

seq1  ATGAATTTTCAACAGCAAGTATTCAAGGGGTTTAACTGAGGGGACTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTCAACAGCAAGTATTCAAGGGGTTTAACTGAGGGGACTTAAT  300

seq1  TTAGTTTTCCTAAATTAAGAGACCTTGTCCTTATGTCCCTAAACTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCTAAATTAAGAGACCTTGTCCTTATGTCCCTAAACTTCTCA  350

seq1  AATTCGTTCTAAACTAGATATAAATATGAGGAAATGGTGAGGAAATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTTCTAAACTAGATATAAATATGAGGAAATGGTGAGGAAATACAA  400

seq1  TACATTATTGTCCCCAGTAAGTCTGTGCCTTGATCACAATATGTGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATTGTCCCCAGTAAGTCTGTGCCTTGATCACAATATGTGCAGAT  450

seq1  TGGTAAATGCTGAAGTTCAGTCTTTCTGCAATGGTCATCTGCATCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGCTGAAGTTCAGTCTTTCTGCAATGGTCATCTGCATCTTTTC  500

seq1  TTGTTTTCTGTTCCTTCTATTATAATAAAGTTAATGGATTTACCTAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGTTCCTTCTATTATAATAAAGTTAATGGATTTACCTAATCC  550

seq1  AGAAATTTAATTCGTTATTGTGCACATACTTTAAATATCCTGTGAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAATTCGTTATTGTGCACATACTTTAAATATCCTGTGAATAAT  600

seq1  GTTGCACTCTGTGTCATATTTAAAAAAAAAAAGGACATCTCAATCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACTCTGTGTCATATTTAAAAAAAAAAAGGACATCTCAATCTTACT  650

seq1  GCACAAGCCATTGCTGCTCTATTCAGGAATTTTTCCCCTGTGCCCATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCATTGCTGCTCTATTCAGGAATTTTTCCCCTGTGCCCATATC  700

seq1  TTCGAGGCTTTTCCCCATTTTCTCCTCTATAAGTTTCACAGTCTCTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCTTTTCCCCATTTTCTCCTCTATAAGTTTCACAGTCTCTGGTT  750

seq1  TTATATGGAGTTCCTTGATCTACTTAGATTTGACCTTAGTACAAGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGAGTTCCTTGATCTACTTAGATTTGACCTTAGTACAAGGAGAT  800

seq1  AGGAATGGATCAATTCACATTCTTCTACGTGATAACTGCCAGTTGTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGATCAATTCACATTCTTCTACGTGATAACTGCCAGTTGTGCCA  850

seq1  GCGCCTTTGGTGAAAATGCTGTCTTTTTTCCAATGGATGGGTTTTGCTCC  900
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GCGCCTTTGGTGAAAATGCTGTC-TTTTTCCAATGGATGGG-TTTGCTCC  898

seq1  CTTGTCAAAAAACAAGTGTCCATAGGTGTGTGGGTTCATTTCTGGGTCTT  950
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CTTGTCAAAAAACAAGTGTCCATA-GTGTGTGGG-TCATTTCTGGGTCTT  946

seq1  CAATTCTATTCCATTGGTCTACTTGTTCTTTGCTATACCAGTACCATGCA  1000
      ||||||||||||||  |||||||   ||||||||||||||||||||||||
seq2  CAATTCTATTCCAT--GTCTACT--GTCTTTGCTATACCAGTACCATGCA  992

seq1  GTTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGA  1050
      | |||||||||||  |||||||||||||||||||| |||| |||| ||||
seq2  G-TTTTTATCACA--TGCTCTGTAGTACAGCTTTA-GTCAAGCAT-GTGA  1037

seq1  TTCCACCAGAGGTTCTTT  1068
      |||||||||| |||||||
seq2  TTCCACCAGA-GTTCTTT  1054