BAC Information

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BAC

Clone NameB6Ng01-238O23
Chromosome1 (Build37)
Map Location 63,066,391 - 63,220,404
singlet/doubletdoublet
Overlap geneA430093A21Rik, Ndufs1, Eef1b2
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneGpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O23.bB6Ng01-238O23.g
ACCGA049499GA049500
length549731
definitionB6Ng01-238O23.b B6Ng01-238O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,066,391 - 63,066,944)(63,219,823 - 63,220,404)
sequence
tccctttcttcctcctcaatccctgaattgaatcctcagatctgcataat
attacttctctgtaatcctggcatttgagtactggaggcaggggattaga
aattcaaggtcttctttggctaaatgagagcctatctaaagggaggagtc
agtaaagacatgtgcctttaatcccagaatttagaaggctgaggcaggag
gaagaggattacaaattcaagatcagcttgggcttcatagcaagctcgta
gcaaaagctgggctagggagatgactcactcagtaagtaaatttattgct
ttgcaaacatgaggatccaagttcaatctccaactcgttgattacaaggc
tgggtgtgttaagggaaattgggggctggagagaagggaataaagtggaa
tagaagtggaagtagggatcatgggggcaaaagggaactgtggagaaatg
acaaacaggaatacaagagaggagggatcaccaaccaaaatgaaaatccc
atgtgaaatcaagttacttttgtgagctgattttacaacacacacacac
gaattcaagaccagcctaggccatacctttgggattggaaagatggctgg
gtagttaagactgttctttcagaggacccagatctgattctctaaaatta
catgacagctcagcaactgtctgtaactccagttccagaggatctgataa
cctctcctggcctccttggacatcaggcatgcacatggtgaatagacatg
cagacaaaacacagaacaaacactttcttttttttttttttttttttttg
gtttttccaagacagagtttctctgtatagccctggctgtcctggaactc
actttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcc
tcctgagtgctgggactaaaggcgtgcgccaccacgcccggcacattggc
acattcttttaaagatttatttattttatgtgagtatactgttgctctcc
tcagacacaccagaggagggcatcagcttctattacagatggttgtaagc
caccatgtggttgctgggaattgaactcaggatctctagaagagcagtca
gtgctcttaaccaccgagccatctctccagcagccctcacattttttttt
ttttaaattaaaaagggaaaaaaaaaaaatgttttgggattattttacta
ttagaactgctattactgttgaaacttttttttttttttttttttttttt
gggttttcgaagtcaagggttctctggtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_63066391_63066944
seq2: B6Ng01-238O23.b_45_599

seq1  GAATTCTCCCTTTCTTCCTCCTCAATCCCTGAATTGAATCCTCAGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTCTTCCTCCTCAATCCCTGAATTGAATCCTCAGATCTG  50

seq1  CATAATATTACTTCTCTGTAATCCTGGCATTTGAGTACTGGAGGCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTACTTCTCTGTAATCCTGGCATTTGAGTACTGGAGGCAGGGG  100

seq1  ATTAGAAATTCAAGGTCTTCTTTGGCTAAATGAGAGCCTATCTAAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATTCAAGGTCTTCTTTGGCTAAATGAGAGCCTATCTAAAGGGA  150

seq1  GGAGTCAGTAAAGACATGTGCCTTTAATCCCAGAATTTAGAAGGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGTAAAGACATGTGCCTTTAATCCCAGAATTTAGAAGGCTGAGG  200

seq1  CAGGAGGAAGAGGATTACAAATTCAAGATCAGCTTGGGCTTCATAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAGAGGATTACAAATTCAAGATCAGCTTGGGCTTCATAGCAAG  250

seq1  CTCGTAGCAAAAGCTGGGCTAGGGAGATGACTCACTCAGTAAGTAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAGCAAAAGCTGGGCTAGGGAGATGACTCACTCAGTAAGTAAATTT  300

seq1  ATTGCTTTGCAAACATGAGGATCCAAGTTCAATCTCCAACTCGTTGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGCAAACATGAGGATCCAAGTTCAATCTCCAACTCGTTGATTA  350

seq1  CAAGGCTGGGTGTGTTAAGGGAAATTGGGGGCTGGAGAGAAGGGAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGGTGTGTTAAGGGAAATTGGGGGCTGGAGAGAAGGGAATAAA  400

seq1  GTGGAATAGAAGTGGAAGTAGGGATCATGGGGGCAAAAGGGAACAGTGGA  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGGAATAGAAGTGGAAGTAGGGATCATGGGGGCAAAAGGGAACTGTGGA  450

seq1  GAAATGAGAAACAGGAAGACAAGAGAGGAGGGATCACCAACCAAAATGAA  500
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAATGACAAACAGGAATACAAGAGAGGAGGGATCACCAACCAAAATGAA  500

seq1  AATCCCATGTGAAAGCAAGTTAC-TTTGTGAGCTGATTTTACAACACACA  549
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  AATCCCATGTGAAATCAAGTTACTTTTGTGAGCTGATTTTACAACACACA  550

seq1  CACAC  554
      |||||
seq2  CACAC  555

seq1: chr1_63219823_63220404
seq2: B6Ng01-238O23.g_212_797 (reverse)

seq1  TATA-CAGAGAAACCCTGAC-TCGAAAAACCAAAAAAAAAAAAAAAAAAA  48
      |||| ||||||| || |||| ||||||| |||||||||||||||||||||
seq2  TATACCAGAGAACCCTTGACTTCGAAAACCCAAAAAAAAAAAAAAAAAAA  50

seq1  AAAAAAGTTTCAACAGTAATAGCAGTTCTAATAGT-AAATAATCCCAAAA  97
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAAAGTTTCAACAGTAATAGCAGTTCTAATAGTAAAATAATCCCAAAA  100

seq1  CA-TATTTTTTTTTCCCTTTTTAATTTAAAAAAAAAAAAATGTGAGGGCT  146
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTTTTCCCTTTTTAATTTAAAAAAAAAAAAATGTGAGGGCT  150

seq1  GCTGGAGAGATGGCTCGGTGGTTAAGAGCACTGACTGCTCTTCTAGAGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCGGTGGTTAAGAGCACTGACTGCTCTTCTAGAGAT  200

seq1  CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTTACAACCATCTGTAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTTACAACCATCTGTAAT  250

seq1  AGAAGCTGATGCCCTCCTCTGGTGTGTCTGAGGAGAGCAACAGTATACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGATGCCCTCCTCTGGTGTGTCTGAGGAGAGCAACAGTATACTC  300

seq1  ACATAAAATAAATAAATCTTTAAAAGAATGTGCCAATGTGCCGGGCGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAATAAATCTTTAAAAGAATGTGCCAATGTGCCGGGCGTGG  350

seq1  TGGCGCACGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTAGTCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTT  400

seq1  CTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  450

seq1  GCTATACAGAGAAACTCTGTCTTGGAAAAACCAAAAAAAAAAAAAAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACTCTGTCTTGGAAAAACCAAAAAAAAAAAAAAAAAA  500

seq1  AAAAGAAAGTGTTTGTTCTGTGTTTTGTCTGCATGTCTATTCACCATGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTGTTTGTTCTGTGTTTTGTCTGCATGTCTATTCACCATGTG  550

seq1  CATGCCTGATGTCCAAGGAGGCCAGGAGAGGTTATC  582
      ||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGATGTCCAAGGAGGCCAGGAGAGGTTATC  586