BAC Information

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BAC

Clone NameB6Ng01-239F10
Chromosome1 (Build37)
Map Location 69,971,271 - 70,132,217
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239F10.bB6Ng01-239F10.g
ACCGA049790GA049791
length1,1521,120
definitionB6Ng01-239F10.b B6Ng01-239F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,131,079 - 70,132,217)(69,971,271 - 69,972,391)
sequence
gaattcacaggtcagggcaaatccttatgaatatgaaaagggaacaggac
tttcagcaaactgaagcaagcatggtgaattaaggcatagagtccatggt
gaagagcagaaaggaatggcccctcttctactaaacacaatagcacggag
aaaccatgcaaccacaaaacacacgctagtttattgaatcctctcccaaa
tcagtggcagatatagtcagacccttctgaagaaggcaagcatcttacag
tttacgttggaatgtgtatgtgaatagctgagaatgggagacacccaaaa
agttgtgaacccctgctttaattcaccaaacattgcactaatcaaactaa
ttggctacagggtaaaagttcatgagtccttagtacaaggaaagctttga
aacccaaaacaactgacgggcttaggagcatgactgaaactttctggaca
tctagcacttgcttctgaatcaaaatgctccagaatgctccatggtttca
ggaaaccaaggccctcccttggctaagtgtgaatgaagaactaagggata
gcaacactaagcttcaaccaatcaaaactaaggttttagaaatgtgctgt
gaaacgtgcaaccatttgtgtccagggttcatttctcttctgtgcatcgg
atggtttcattattgctggagccttcctcactaactccacgtctgcagga
tcactctacacactggatcaggggctaacacattatctgtgctatggaag
aactcctaggaattgtccagtttactttacacccccccccccccccccga
ttagatattatatgtggtttcctcctgcttcccagactctgagatgtaac
tccattccctccatgttccaaataccaaatccctgttggtttaagttgcc
cagataatgctatataatgtaccttaattgaagccttttggaacttatta
tttagtgtacagagtgtaaaaaacaaaaagacatgcccatccactgaggg
acttttgggaaatccttactctactgaggcctgccacttaagattcaggt
gaagggggctctgggcctagctagctgccttaggggacatgccagcaatg
ctctgcagacttgcccttctactattggctctgccttgctagaagttcct
aa
gaattccattttttatatgtctttgtcatgccatatgtgtggtgggactt
ttgagttttaccaacaaattcatgagtgtaatgatcccaggacattatgt
gggatcatttcttctctgagttctgattttaagtacccaacagtccactt
gaaagctgaccaagtgttgatactgatttcctgacatagttgtctttctt
tactttttcccatttgttaataaaagtgccaccctttctgttccttaggc
taaactgctcggcagttatccttgagattgcaagttatctctgtctgtct
gtcctcacatttgatatgaaaagaaattattttgttatatttttggaaat
tatttttcacctttttataacaccagcactgtttgccttcctgcctcctc
cctcatctccagcctcacacttccgtgtgagtgtgtcctttttctgtaac
taagattattgtagaaacctcctaactagtctttgcttttgtctttatag
tcctgtgaatgcagtagctaagccatcattttaaaaggcatcaaccctga
acattcctttgctgaagtcttttcagtggtctccttgcttattcttagtc
acagggaatcccagacatgatgacttcaaaggctctgtgtattcccaccc
tttcccttcctcctcttttctcttgctacatattgcacccacagtctagc
cttccatgaccttctatggcactgtcttgtggcattggcatttggagctc
ccactgtttgggttgttccatcactcctggcccaggctaaattgcaatgc
tcttgcttatccctccacatgacttgtgcctctttccttctctacgtttc
ccttaagtgccctcacatgtttctacatgagacattgtgctgatcaattt
gctcatcatgattttggtcactgaaatatcagcccatgagagcaggattg
tggaactttttatccactgctgtgatgtttccagtcttattatctagaaa
atatatgtcacaggtgtaaataaaaatgtgttcttagaaaggtaatatga
aaaacattgcatgattaatctgaatcattgccttgtcatctcttctttcc
aatagaagtagctggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70131079_70132217
seq2: B6Ng01-239F10.b_46_1197 (reverse)

seq1  TTAGGAATTTCTTAGCAAGGCAGAGGCAATAGGTAGAAGGGCAAGGCCTG  50
      ||||||| ||| ||||||||||||| ||||| |||||||||||| | |||
seq2  TTAGGAACTTC-TAGCAAGGCAGAGCCAATA-GTAGAAGGGCAA-GTCTG  47

seq1  CCAGAGCCATGCTTGCCATGTCCCCTAAG--CGCTAGCTAG--CCAGAG-  95
       ||||||  ||| || |||||||||||||   |||||||||  |||||| 
seq2  -CAGAGCATTGC-TGGCATGTCCCCTAAGGCAGCTAGCTAGGCCCAGAGC  95

seq1  CCCCTTCACCTGAATCTT-AGT-GCAGGCCTCAGTAGAGT-AGGATTTCC  142
      |||||||||||||||||| ||| ||||||||||||||||| |||||||||
seq2  CCCCTTCACCTGAATCTTAAGTGGCAGGCCTCAGTAGAGTAAGGATTTCC  145

seq1  --AAAGTCCCTCAGTGGAT-GGCATGTCTTTT--GTTTTTACACTCTTGT  187
        ||||||||||||||||| ||||||||||||   ||||||||||| |||
seq2  CAAAAGTCCCTCAGTGGATGGGCATGTCTTTTTGTTTTTTACACTC-TGT  194

seq1  ACACTAAATAAT-AGTT-CAAAAGGCTTCAATTAAGGTACATTATATAGC  235
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  ACACTAAATAATAAGTTCCAAAAGGCTTCAATTAAGGTACATTATATAGC  244

seq1  ATTATCTGGGCAACTTAAACCAACAGGGATTTGGTATTTGGAACATGGA-  284
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTATCTGGGCAACTTAAACCAACAGGGATTTGGTATTTGGAACATGGAG  294

seq1  GGAATGGAGTTACATCTCAGAGTCTGGGAAGCAGGAGGAAACCACATATA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGTTACATCTCAGAGTCTGGGAAGCAGGAGGAAACCACATATA  344

seq1  ATATCTAATC---GGGGGGGGGGGGGGTGTAAAGTAAACTGGACAATTCC  381
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATCGGGGGGGGGGGGGGGGGTGTAAAGTAAACTGGACAATTCC  394

seq1  TAGGAGTTCTTCCATAGCACAGATAATGTGTTAGCCCCTGATCCAGTGTG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTCTTCCATAGCACAGATAATGTGTTAGCCCCTGATCCAGTGTG  444

seq1  TAGAGTGATCCTGCAGACGTGGAGTTAGTGAGGAAGGCTCCAGCAATAAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGATCCTGCAGACGTGGAGTTAGTGAGGAAGGCTCCAGCAATAAT  494

seq1  GAAACCATCCGATGCACAGAAGAGAAATGAACCCTGGACACAAATGGTTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATCCGATGCACAGAAGAGAAATGAACCCTGGACACAAATGGTTG  544

seq1  CACGTTTCACAGCACATTTCTAAAACCTTAGTTTTGATTGGTTGAAGCTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTCACAGCACATTTCTAAAACCTTAGTTTTGATTGGTTGAAGCTT  594

seq1  AGTGTTGCTATCCCTTAGTTCTTCATTCACACTTAGCCAAGGGAGGGCCT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGCTATCCCTTAGTTCTTCATTCACACTTAGCCAAGGGAGGGCCT  644

seq1  TGGTTTCCTGAAACCATGGAGCATTCTGGAGCATTTTGATTCAGAAGCAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTGAAACCATGGAGCATTCTGGAGCATTTTGATTCAGAAGCAA  694

seq1  GTGCTAGATGTCCAGAAAGTTTCAGTCATGCTCCTAAGCCCGTCAGTTGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGATGTCCAGAAAGTTTCAGTCATGCTCCTAAGCCCGTCAGTTGT  744

seq1  TTTGGGTTTCAAAGCTTTCCTTGTACTAAGGACTCATGAACTTTTACCCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTCAAAGCTTTCCTTGTACTAAGGACTCATGAACTTTTACCCT  794

seq1  GTAGCCAATTAGTTTGATTAGTGCAATGTTTGGTGAATTAAAGCAGGGGT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAATTAGTTTGATTAGTGCAATGTTTGGTGAATTAAAGCAGGGGT  844

seq1  TCACAACTTTTTGGGTGTCTCCCATTCTCAGCTATTCACATACACATTCC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTTTTTGGGTGTCTCCCATTCTCAGCTATTCACATACACATTCC  894

seq1  AACGTAAACTGTAAGATGCTTGCCTTCTTCAGAAGGGTCTGACTATATCT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAACTGTAAGATGCTTGCCTTCTTCAGAAGGGTCTGACTATATCT  944

seq1  GCCACTGATTTGGGAGAGGATTCAATAAACTAGCGTGTGTTTTGTGGTTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGATTTGGGAGAGGATTCAATAAACTAGCGTGTGTTTTGTGGTTG  994

seq1  CATGGTTTCTCCGTGCTATTGTGTTTAGTAGAAGAGGGGCCATTCCTTTC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTCTCCGTGCTATTGTGTTTAGTAGAAGAGGGGCCATTCCTTTC  1044

seq1  TGCTCTTCACCATGGACTCTATGCCTTAATTCACCATGCTTGCTTCAGTT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCACCATGGACTCTATGCCTTAATTCACCATGCTTGCTTCAGTT  1094

seq1  TGCTGAAAGTCCTGTTCCCTTTTCATATTCATAAGGATTTGCCCTGACCT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAGTCCTGTTCCCTTTTCATATTCATAAGGATTTGCCCTGACCT  1144

seq1  GTGAATTC  1139
      ||||||||
seq2  GTGAATTC  1152

seq1: chr1_69971271_69972391
seq2: B6Ng01-239F10.g_64_1183

seq1  GAATTCCATTTTTTATATGTCTTTGTCATGCCATATGTGTGGTGGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTTTATATGTCTTTGTCATGCCATATGTGTGGTGGGACTT  50

seq1  TTGAGTTTTACCAACAAATTCATGAGTGTAATGATCCCAGGACATTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTACCAACAAATTCATGAGTGTAATGATCCCAGGACATTATGT  100

seq1  GGGATCATTTCTTCTCTGAGTTCTGATTTTAAGTACCCAACAGTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATTTCTTCTCTGAGTTCTGATTTTAAGTACCCAACAGTCCACTT  150

seq1  GAAAGCTGACCAAGTGTTGATACTGATTTCCTGACATAGTTGTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGACCAAGTGTTGATACTGATTTCCTGACATAGTTGTCTTTCTT  200

seq1  TACTTTTTCCCATTTGTTAATAAAAGTGCCACCCTTTCTGTTCCTTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCCATTTGTTAATAAAAGTGCCACCCTTTCTGTTCCTTAGGC  250

seq1  TAAACTGCTCGGCAGTTATCCTTGAGATTGCAAGTTATCTCTGTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTCGGCAGTTATCCTTGAGATTGCAAGTTATCTCTGTCTGTCT  300

seq1  GTCCTCACATTTGATATGAAAAGAAATTATTTTGTTATATTTTTGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACATTTGATATGAAAAGAAATTATTTTGTTATATTTTTGGAAAT  350

seq1  TATTTTTCACCTTTTTATAACACCAGCACTGTTTGCCTTCCTGCCTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACCTTTTTATAACACCAGCACTGTTTGCCTTCCTGCCTCCTC  400

seq1  CCTCATCTCCAGCCTCACACTTCCGTGTGAGTGTGTCCTTTTTCTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCCAGCCTCACACTTCCGTGTGAGTGTGTCCTTTTTCTGTAAC  450

seq1  TAAGATTATTGTAGAAACCTCCTAACTAGTCTTTGCTTTTGTCTTTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTATTGTAGAAACCTCCTAACTAGTCTTTGCTTTTGTCTTTATAG  500

seq1  TCCTGTGAATGCAGTAGCTAAGCCATCATTTTAAAAGGCATCAACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAATGCAGTAGCTAAGCCATCATTTTAAAAGGCATCAACCCTGA  550

seq1  ACATTCCTTTGCTGAAGTCTTTTCAGTGGTCTCCTTGCTTATTCTTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTTGCTGAAGTCTTTTCAGTGGTCTCCTTGCTTATTCTTAGTC  600

seq1  ACAGGGAATCCCAGACATGATGACTTCAAAGGCTCTGTGTATTCCCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATCCCAGACATGATGACTTCAAAGGCTCTGTGTATTCCCACCC  650

seq1  TTTCCCTTCCTCCTCTTTTCTCTTGCTACATATTGCACCCACAGTCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCTCCTCTTTTCTCTTGCTACATATTGCACCCACAGTCTAGC  700

seq1  CTTCCATGACCTTCTATGGCACTGTCTTGTGGCATTGGCATTTGGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGACCTTCTATGGCACTGTCTTGTGGCATTGGCATTTGGAGCTC  750

seq1  CCACTGTTTGGGTTGTTCCATCACTCCTGGCCCAGGCTAAATTGCAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTGGGTTGTTCCATCACTCCTGGCCCAGGCTAAATTGCAATGC  800

seq1  TCTTGCTTATCCCTCCACATGACTTGTGCCTCTTTCCTTCTCTACGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTATCCCTCCACATGACTTGTGCCTCTTTCCTTCTCTACGTTTC  850

seq1  CCTTAAGTGCCCTCACATGTTTCTACATGAGACATTGTGCTGATCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTGCCCTCACATGTTTCTACATGAGACATTGTGCTGATCAATTT  900

seq1  GCTCATCATGATTTTTGTCACTGAAATATCAGCCCATGAGAGCAGGATTG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCATCATGATTTTGGTCACTGAAATATCAGCCCATGAGAGCAGGATTG  950

seq1  TGGAACTTTTTATCCACTGCTGTGATGTTTCCAGTCTTA-TATCTAGAAA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGAACTTTTTATCCACTGCTGTGATGTTTCCAGTCTTATTATCTAGAAA  1000

seq1  ATATATGTCACAGGTTTAAATAAAAATGTGTTCTTAGAAA-GTAATAT--  1046
      ||||||||||||||| |||||||||||||||||||||||| |||||||  
seq2  ATATATGTCACAGGTGTAAATAAAAATGTGTTCTTAGAAAGGTAATATGA  1050

seq1  AAAACATTTGCATGGATTAATCTGAAATCATTGCCTTGTTAATCTCTTCT  1096
      |||||| |||||| |||||||||| ||||||||||||| | |||||||||
seq2  AAAACA-TTGCAT-GATTAATCTG-AATCATTGCCTTG-TCATCTCTTCT  1096

seq1  TTCATATAGATAGTAGCTGTGGTGG  1121
      |||  ||||| |||||||| |||||
seq2  TTCCAATAGA-AGTAGCTGGGGTGG  1120