BAC Information

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BAC

Clone NameB6Ng01-239P06
Chromosome1 (Build37)
Map Location 11,159,023 - 11,334,078
singlet/doubletdoublet
Overlap geneC030045D06Rik
Upstream geneArfgef1, Cpa6, LOC433271
Downstream geneA830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239P06.bB6Ng01-239P06.g
ACCGA050245GA050246
length1,152778
definitionB6Ng01-239P06.b B6Ng01-239P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,159,023 - 11,160,174)(11,333,546 - 11,334,078)
sequence
gaattcaaagaagtttcctgatgactttctagatcccaaaactgctgaag
agaaaatgtctggcaatgaataggaaaaatctagacataccaaaaatctt
gcagaaagcccagagtgagtgggtaatgtatgagtagaactatgttcaca
tcagaaggagtttgggagcgaggggagagagtgccttgaagtaaggggaa
gcatacttagtggaaccagaatgctggcctcagaccacagagggaacgta
tagaatccactggaaaccttctgcaagtttagggtagccagacttggaag
tcacagatcatttgagtggcaatttatcgttactggtgtgaaagcagaat
ccacaacccacctataaagctcagccatctggcagaaagtatgggaagcg
cagccatcctgccactccgggccagcacctctacagcttgcttctgggtc
tgcacagactcctgctttgggtggctttctggtggtgctggggataatcc
catatcctacccttgaccacctatagctagctatactgttttattgactt
gtctagttttacaactctgtttcctgttgtagggtgccttctagcaattc
tttctattaggctctctcagctcctgggacccatgggtccaagtgctatg
aatttatatgtcactgaggttcattctaacatctaactcacccttccagc
gtcagctgagccatctacagttgctgcctatggactttgctttatttgga
tatttgggctttgaaataaattctaacatttcaatctattcttaccttga
ttgtgtagacgtgcctcacttctcctttgattttgtcagggaggatgcgt
gtgagatgtctgagtcattgctgtgagtttaactggttcccacttcttct
ttaacttgcagttctctcgggtgctgaagaacagagcctggcccaccttt
aagcaaggccaaaccttagatcttcccactgcacagcagtgatttctgcc
aaccaactgccacgtcaatgtgatgagtttcctatcgaaaacatcacttt
ccctgggggagtgctcgtggtgcagctagaatagcagaaaacatattctt
accgataaaggaaattaatcttgtccaggccaggtaatttgtcaagctca
tg

gaattcaatttaatccactggctaaaaagctttgtggttaaaatgcaact
ggttttatgtcaattctcacagtgtgtttatcaatggcataccttgtcac
tcacaagtatttaaaattgataacaatacaaatggagaaaagcttttgga
agtttcctgtttccattcaggaaatagtacaagtatttttgggtactatt
cacaaagttatgtgttgtgtccggccagcagaccacaacctgggttctag
cctggaaaggcattttggaaacctggaagagaagaggggctaggtggcga
gagaaaagaatgtagccaagacagttactctgatcaaggctcaaatttta
ttgttgcgacactagttatgaaggaagtgggaggggacccgattcccgcc
gaataatctcgggtccagtagaaaggtgcacgtgtgtgtgtgtggctccg
caggttccagcagtgggcgtggcagaacgaatgagcaggaagctccaccc
ctgagcaagcaggtttcaggctaggggaggggagactacagttatggatg
catgtagcaaactactaaagaaggaggaggaggaagaaagatgaaaaacg
aggaggaagaagatgaagaaagaggaggatagggagaagaatgaagtgca
ggaacaggagcagaagaagtagaaaaaaggaaggaaagaaaaggggaagg
aagaagaaaaaggaggaagagcaagcagaacaggaataggaagaaggaaa
gacagtgggaggaggaggaagaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11159023_11160174
seq2: B6Ng01-239P06.b_43_1194

seq1  GAATTCAAAGAAGTTTCCTGATGACTTTCTAGATCCCAAAACTGCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGTTTCCTGATGACTTTCTAGATCCCAAAACTGCTGAAG  50

seq1  AGAAAATGTCTGGCAATGAATAGGAAAAATCTAGACATACCAAAAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTCTGGCAATGAATAGGAAAAATCTAGACATACCAAAAATCTT  100

seq1  GCAGAAAGCCCAGAGTGAGTGGGTAATGTATGAGTAGAACTATGTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCCCAGAGTGAGTGGGTAATGTATGAGTAGAACTATGTTCACA  150

seq1  TCAGAAGGAGTTTGGGAGCGAGGGGAGAGAGTGCCTTGAAGTAAGGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGAGTTTGGGAGCGAGGGGAGAGAGTGCCTTGAAGTAAGGGGAA  200

seq1  GCATACTTAGTGGAACCAGAATGCTGGCCTCAGACCACAGAGGGAACGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTAGTGGAACCAGAATGCTGGCCTCAGACCACAGAGGGAACGTA  250

seq1  TAGAATCCACTGGAAACCTTCTGCAAGTTTAGGGTAGCCAGACTTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCACTGGAAACCTTCTGCAAGTTTAGGGTAGCCAGACTTGGAAG  300

seq1  TCACAGATCATTTGAGTGGCAATTTATCGTTACTGGTGTGAAAGCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATCATTTGAGTGGCAATTTATCGTTACTGGTGTGAAAGCAGAAT  350

seq1  CCACAACCCACCTATAAAGCTCAGCCATCTGGCAGAAAGTATGGGAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACCCACCTATAAAGCTCAGCCATCTGGCAGAAAGTATGGGAAGCG  400

seq1  CAGCCATCCTGCCACTCCGGGCCAGCACCTCTACAGCTTGCTTCTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCCTGCCACTCCGGGCCAGCACCTCTACAGCTTGCTTCTGGGTC  450

seq1  TGCACAGACTCCTGCTTTGGGTGGCTTTCTGGTGGTGCTGGGGATAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACTCCTGCTTTGGGTGGCTTTCTGGTGGTGCTGGGGATAATCC  500

seq1  CATATCCTACCCTTGACCACCTATAGCTAGCTATACTGTTTTATTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTACCCTTGACCACCTATAGCTAGCTATACTGTTTTATTGACTT  550

seq1  GTCTAGTTTTACAACTCTGTTTCCTGTTGTAGGGTGCCTTCTAGCAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTTTACAACTCTGTTTCCTGTTGTAGGGTGCCTTCTAGCAATTC  600

seq1  TTTCTATTAGGCTCTCTCAGCTCCTGGGACCCATGGGTCCAAGTGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAGGCTCTCTCAGCTCCTGGGACCCATGGGTCCAAGTGCTATG  650

seq1  AATTTATATGTCACTGAGGTTCATTCTAACATCTAACTCACCCTTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGTCACTGAGGTTCATTCTAACATCTAACTCACCCTTCCAGC  700

seq1  GTCAGCTGAGCCATCTACAGTTGCTGCCTATGGACTTTGCTTTATTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGAGCCATCTACAGTTGCTGCCTATGGACTTTGCTTTATTTGGA  750

seq1  TATTTGGGCTTTGAAATAAATTCTAACATTTCAATCTATTCTTACCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGCTTTGAAATAAATTCTAACATTTCAATCTATTCTTACCTTGA  800

seq1  TTGTGTAGACGTGCCTCACTTCTCCTTTGATTTTGTCAGGGAGGATGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGACGTGCCTCACTTCTCCTTTGATTTTGTCAGGGAGGATGCGT  850

seq1  GTGAGATGTCTGAGTCATTGCTGTGAGTTTAACTGGTTCCCACTTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTCTGAGTCATTGCTGTGAGTTTAACTGGTTCCCACTTCTTCT  900

seq1  TTAACTTGCAGTTCTCTCGGGTGCTGAAGAACAGAGCCTGGCCCACCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGCAGTTCTCTCGGGTGCTGAAGAACAGAGCCTGGCCCACCTTT  950

seq1  AAGC-AGGCCAAACCTAAGATCTCCCCACTGCACAGCAGTGATTTCTGCC  999
      |||| ||||||||||| |||||| |||||||||||||||||||||||| |
seq2  AAGCAAGGCCAAACCTTAGATCTTCCCACTGCACAGCAGTGATTTCTG-C  999

seq1  CAACCAACTGCCACGTCAATGTGATGGAAGTTTCTTATCCGAAAACATCA  1049
      ||||||||||||||||||||||||||  |||||| ||| |||||||||||
seq2  CAACCAACTGCCACGTCAATGTGATG--AGTTTCCTAT-CGAAAACATCA  1046

seq1  ACTTCCCT-GGGGAGTGCCTTCGGTGTGCAGCTAG-ATAGCAGAAAACAT  1097
        |||||| |||||||||  |||  |||||||||| ||||||||||||||
seq2  CTTTCCCTGGGGGAGTGC--TCGTGGTGCAGCTAGAATAGCAGAAAACAT  1094

seq1  AATTCTCA-CGATAAAGAAAATAAATC-TGTCGA-GCCAGGTATTTTGTC  1144
       ||||| | |||||||| |||| |||| |||| | |||||||| ||||||
seq2  -ATTCTTACCGATAAAGGAAATTAATCTTGTCCAGGCCAGGTAATTTGTC  1143

seq1  AAG-TCATG  1152
      ||| |||||
seq2  AAGCTCATG  1152


seq1: chr1_11333546_11334078
seq2: B6Ng01-239P06.g_65_597 (reverse)

seq1  TCCCCTCCCCTAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCTAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCT  50

seq1  CATTCGTTCTGCCACGCCCACTGCTGGAACCTGCGGAGCCACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTTCTGCCACGCCCACTGCTGGAACCTGCGGAGCCACACACACAC  100

seq1  ACGTGCACCTTTCTACTGGACCCGAGATTATTCGGCGGGAATCGGGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCACCTTTCTACTGGACCCGAGATTATTCGGCGGGAATCGGGTCCC  150

seq1  CTCCCACTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTCCTTCATAACTAGTGTCGCAACAATAAAATTTGAGCCTTGA  200

seq1  TCAGAGTAACTGTCTTGGCTACATTCTTTTCTCTCGCCACCTAGCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAACTGTCTTGGCTACATTCTTTTCTCTCGCCACCTAGCCCCTC  250

seq1  TTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTG  300

seq1  GTCTGCTGGCCGGACACAACACATAACTTTGTGAATAGTACCCAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGGCCGGACACAACACATAACTTTGTGAATAGTACCCAAAAATA  350

seq1  CTTGTACTATTTCCTGAATGGAAACAGGAAACTTCCAAAAGCTTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTATTTCCTGAATGGAAACAGGAAACTTCCAAAAGCTTTTCTCC  400

seq1  ATTTGTATTGTTATCAATTTTAAATACTTGTGAGTGACAAGGTATGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTGTTATCAATTTTAAATACTTGTGAGTGACAAGGTATGCCAT  450

seq1  TGATAAACACACTGTGAGAATTGACATAAAACCAGTTGCATTTTAACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACACACTGTGAGAATTGACATAAAACCAGTTGCATTTTAACCAC  500

seq1  AAAGCTTTTTAGCCAGTGGATTAAATTGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTTAGCCAGTGGATTAAATTGAATTC  533


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