BAC Information

Click to search

BAC

Clone NameB6Ng01-240A24
Chromosome1 (Build37)
Map Location 148,253,481 - 148,361,181
singlet/doubletdoublet
Overlap geneLOC383571, B830045N13Rik
Upstream genenone
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240A24.bB6Ng01-240A24.g
ACCGA050327GA050328
length1,1551,035
definitionB6Ng01-240A24.b B6Ng01-240A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,253,481 - 148,254,635)(148,360,131 - 148,361,181)
sequence
gaattcactcctagtcactcccattatcggggtgtaatagtggggtgatg
ggcaagcaacgaatcaggagctgtcacgccatatcaggtgctgaaacgtc
acactgcgggttataaaagcagcgccattttcccggttagggatcttcct
gagaagcaagcaataaagctcttgccgcggaagattctggtttgttgtgt
ctttcttgccggtcgagcgggacgcaatataaacctatactccactttat
ttgaccctcctcttcaatatgcctgctcctcagtacacccctaagatcaa
ttctccaagggagatttttgtgtccaccctagtccatccttctataccta
gcctctcagggtctacagatgctagcaacattatcatatacttaactaca
aatatccacaaataagcatgtagatagataatatttgccattctggatct
agattacctcactcagaatgattgttttctagttctatttgcctgccaat
ttcatgatgtcacaagagtactccttttcttttaaattaaataaagcaat
ttgacaaacttcactgaacaattttagtgaaatagcctttatatattaat
cttcaacctataaatggtgaaaaacttttaaaagagatttgttttttaac
tttgtggagaaaaaaatgctgagtagctacacaatccattgaaatcacct
accaaggagataagaatggatcaattcacattcttctacatgataatctc
cagttgagcctgcaccatttgatgaaaatgctgtcttttttccacaggat
ggtttttagctcctttgtgatcaagtgaccataggtgtgtgggttcattt
ctgggtcttcaattctattccattgaactacctgtctgtcactgtactaa
taaaatgtagttttttatcacaattgctctgtattacagcttgaggtcag
agatggtgattccactagaagttctttattgttgagaatagtttttgcta
ttctaggttttttggtttttttgttgtttgttttttattttgttatcaga
tgattgcaatttgcctttctactctgaagaatgagttggaatttggattg
ggattgcatctgtaagattgccttggccaatgccaatttttacatataaa
tcctg

gaattcacatatacatgagtcacactgcatgtgtgaaacaacctcattga
aaacaacctcagttgtgttcttcttgctctccacttcctttaaggtaggc
tattctgaacaaatgccgataatacttatctagagttttttgggatttcc
cctctctgtctttcttctcttcataagagtcttgggttttcatttctgca
tgctaccactcctgccttaagttgctagttagttagtgagtttgtttgtt
tgttttgaaattaaacccaattcagctgattgagcataatcagctcttat
aattatttcaggggatctgcttatgtttgttttaaagacaaaatctatgt
agaacagactaccctccagctaaatctgtctcattctcttgactcgttag
tgtgtacaccatttcacctagctattttagctgttttgagaaatgcattt
taactaaattattcagataacatctatattatctaactaagtgtggaata
aaataattactcaaagaacacagtgatacataagtgtctgtacacaatca
aacatatgcatatagacagatagataatagctaggtaggtcaatgtttat
aatagtataagaaaggaagtataagtacagaaatatctttttcatgttta
cttaaacttttggcttgatcactggggaaattgtaattaaattcttttcc
agtgatttaagtgatccatgtatacactgtgtcttatccatacataattg
tatacagtacttgtgaacacagaaactaaacaatatagaatattcacaaa
ctttggaactaaatacataatactatacccttccagatgagacacatata
tcccagcaaaatacccccaatgtgtaatcctacaatagttctgtgctagc
tgctattgttgtatatgtctatgtattatgacatatgctctaagaaatac
tgactttagtgtctttctcaattctttttttttaagtgacatataaagag
ttcacatgtcagttgtagaagttaagtagaagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148253481_148254635
seq2: B6Ng01-240A24.b_54_1198

seq1  CTAGTCACTCCCATTATCGGGGTGTAATAGTGGGGTGATGGGCAAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACTCCCATTATCGGGGTGTAATAGTGGGGTGATGGGCAAGCAAC  50

seq1  GAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACACTGCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACACTGCGGG  100

seq1  TTATAAAAGCAGCGCCATTTTCCCGGTTAGGGATCTTCCTGAGAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGCAGCGCCATTTTCCCGGTTAGGGATCTTCCTGAGAAGCAAG  150

seq1  CAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGTGTCTTTCTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGTGTCTTTCTTGCC  200

seq1  GGTCGAGCGGGACGCAATATAAACCTATACTCCACTTTATTTGACCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGCGGGACGCAATATAAACCTATACTCCACTTTATTTGACCCTCC  250

seq1  TCTTCAATATGCCTGCTCCTCAGTACACCCCTAAGATCAATTCTCCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATATGCCTGCTCCTCAGTACACCCCTAAGATCAATTCTCCAAGG  300

seq1  GAGATTTTTGTGTCCACCCTAGTCCATCCTTCTATACCTAGCCTCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTGTGTCCACCCTAGTCCATCCTTCTATACCTAGCCTCTCAGG  350

seq1  GTCTACAGATGCTAGCAACATTATCATATACTTAACTACAAATATCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGATGCTAGCAACATTATCATATACTTAACTACAAATATCCACA  400

seq1  AATAAGCATGTAGATAGATAATATTTGCCATTCTGGATCTAGATTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATGTAGATAGATAATATTTGCCATTCTGGATCTAGATTACCTC  450

seq1  ACTCAGAATGATTGTTTTCTAGTTCTATTTGCCTGCCAATTTCATGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATGATTGTTTTCTAGTTCTATTTGCCTGCCAATTTCATGATGT  500

seq1  CACAAGAGTACTCCTTTTCTTTTAAATTAAATAAAGCAATTTGACAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTACTCCTTTTCTTTTAAATTAAATAAAGCAATTTGACAAACT  550

seq1  TCACTGAACAATTTTAGTGAAATAGCCTTTATATATTAATCTTCAACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACAATTTTAGTGAAATAGCCTTTATATATTAATCTTCAACCTA  600

seq1  TAAATGGTGAAAAACTTTTAAAAGAGATTTGTTTTTTAACTTTGTGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTGAAAAACTTTTAAAAGAGATTTGTTTTTTAACTTTGTGGAGA  650

seq1  AAAAAATGCTGAGTAGCTACACAATCCATTGAAATCACCTACCAAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCTGAGTAGCTACACAATCCATTGAAATCACCTACCAAGGAGA  700

seq1  TAAGAATGGATCAATTCACATTCTTCTACATGATAATCTCCAGTTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGATCAATTCACATTCTTCTACATGATAATCTCCAGTTGAGCC  750

seq1  TGCACCATTTGATGAAAATGCTGTCTTTTTTCCACAGGATGGTTTTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCATTTGATGAAAATGCTGTCTTTTTTCCACAGGATGGTTTTTAGC  800

seq1  TCCTTTGTGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTC  850

seq1  AATTCTATTCCATTGAACTACCTGTCTGTCACTGTACTAATAAAATGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTCCATTGAACTACCTGTCTGTCACTGTACTAATAAAATGTAG  900

seq1  TTTTTTATCACAATTGCTCTGTATTACAGCTTGAGGTCAGAGATGGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATCACAATTGCTCTGTATTACAGCTTGAGGTCAGAGATGGTGAT  950

seq1  TCCACTAGAAGTTCTTTATTGTTGAGAATAGTTTTTGCTATTCTAGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGAAGTTCTTTATTGTTGAGAATAGTTTTTGCTATTCTAGGTTT  1000

seq1  TTTGGTTTTTTTGTTTGTTTGTTTTTTATTTTGTTATTCCAGATGAATTT  1050
      ||||||||||||| |||||||||||||||||||||||  |||||||  ||
seq2  TTTGGTTTTTTTG-TTGTTTGTTTTTTATTTTGTTAT--CAGATGA--TT  1045

seq1  GCAAATTGCCCTTTCTAACTCTGAAGAATTGAGTTGGAATTTTGATGGGG  1100
      |||| ||| ||||||| ||||||||||| ||||||||||||| ||| |||
seq2  GCAATTTG-CCTTTCT-ACTCTGAAGAA-TGAGTTGGAATTTGGATTGGG  1092

seq1  ATTGCATCTGT-AGATTGCTTTTGGCAATATGGCCATTTTTACCATATTA  1149
      ||||||||||| ||||||| || | ||||   |||| ||||  ||||| |
seq2  ATTGCATCTGTAAGATTGCCTTGGCCAAT---GCCAATTTTTACATATAA  1139

seq1  ATCCTG  1155
      ||||||
seq2  ATCCTG  1145


seq1: chr1_148360131_148361181
seq2: B6Ng01-240A24.g_62_1096 (reverse)

seq1  AAGCTTCTACCCTAAAACTTTCTACAACTGACAATGTGAACTCTTTATAA  50
      |||||||||  || ||   ||||||||||||| ||||||||||||||| |
seq2  AAGCTTCTA--CTTAA--CTTCTACAACTGAC-ATGTGAACTCTTTAT-A  44

seq1  TGTCACTTAAAAAAAAAAGAATGAGAAAGACAACTAAAGTCAAGTATTTC  100
      |||||||||||||||||  | |||||||||| ||||||||| ||||||||
seq2  TGTCACTTAAAAAAAAAGAATTGAGAAAGAC-ACTAAAGTC-AGTATTTC  92

seq1  -TAGAGCATATTGTTCATAATACATAGACATTATACAACATAGGCAGCCT  149
       ||||||||||   |||||||||||||||| |||||||||   |||| ||
seq2  TTAGAGCATAT--GTCATAATACATAGACA-TATACAACAATAGCAG-CT  138

seq1  AGCACAGAACTATTTGTAGGATTACACATTGGGGGTATTTTGCTGGGATT  199
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AGCACAGAACTA-TTGTAGGATTACACATTGGGGGTATTTTGCTGGGA-T  186

seq1  ATATGTGTCTTTATTCTTGGAAGGGTATAGTATTATGTATTTAGTTCCAA  249
      ||||||||| | ||   |||||||||||||||||||||||||||||||||
seq2  ATATGTGTC-TCAT--CTGGAAGGGTATAGTATTATGTATTTAGTTCCAA  233

seq1  AGTTTGTGAATATTCTATATTGTTTAGTTTCTGTGTTCACAAGTACTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGAATATTCTATATTGTTTAGTTTCTGTGTTCACAAGTACTGTA  283

seq1  TACAATTATGTATGGATAAGACACAGTGTATACATGGATCACTTAAATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATGTATGGATAAGACACAGTGTATACATGGATCACTTAAATCA  333

seq1  CTGGAAAAGAATTTAATTACAATTTCCCCAGTGATCAAGCCAAAAGTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGAATTTAATTACAATTTCCCCAGTGATCAAGCCAAAAGTTTA  383

seq1  AGTAAACATGAAAAAGATATTTCTGTACTTATACTTCCTTTCTTATACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATGAAAAAGATATTTCTGTACTTATACTTCCTTTCTTATACTA  433

seq1  TTATAAACATTGACCTACCTAGCTATTATCTATCTGTCTATATGCATATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACATTGACCTACCTAGCTATTATCTATCTGTCTATATGCATATG  483

seq1  TTTGATTGTGTACAGACACTTATGTATCACTGTGTTCTTTGAGTAATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGTGTACAGACACTTATGTATCACTGTGTTCTTTGAGTAATTAT  533

seq1  TTTATTCCACACTTAGTTAGATAATATAGATGTTATCTGAATAATTTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCACACTTAGTTAGATAATATAGATGTTATCTGAATAATTTAGT  583

seq1  TAAAATGCATTTCTCAAAACAGCTAAAATAGCTAGGTGAAATGGTGTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCATTTCTCAAAACAGCTAAAATAGCTAGGTGAAATGGTGTACA  633

seq1  CACTAACGAGTCAAGAGAATGAGACAGATTTAGCTGGAGGGTAGTCTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACGAGTCAAGAGAATGAGACAGATTTAGCTGGAGGGTAGTCTGTT  683

seq1  CTACATAGATTTTGTCTTTAAAACAAACATAAGCAGATCCCCTGAAATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGATTTTGTCTTTAAAACAAACATAAGCAGATCCCCTGAAATAA  733

seq1  TTATAAGAGCTGATTATGCTCAATCAGCTGAATTGGGTTTAATTTCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAGCTGATTATGCTCAATCAGCTGAATTGGGTTTAATTTCAAAA  783

seq1  CAAACAAACAAACTCACTAACTAACTAGCAACTTAAGGCAGGAGTGGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACTCACTAACTAACTAGCAACTTAAGGCAGGAGTGGTAG  833

seq1  CATGCAGAAATGAAAACCCAAGACTCTTATGAAGAGAAGAAAGACAGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAAATGAAAACCCAAGACTCTTATGAAGAGAAGAAAGACAGAGA  883

seq1  GGGGAAATCCCAAAAAACTCTAGATAAGTATTATCGGCATTTGTTCAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATCCCAAAAAACTCTAGATAAGTATTATCGGCATTTGTTCAGAA  933

seq1  TAGCCTACCTTAAAGGAAGTGGAGAGCAAGAAGAACACAACTGAGGTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTACCTTAAAGGAAGTGGAGAGCAAGAAGAACACAACTGAGGTTGT  983

seq1  TTTCAATGAGGTTGTTTCACACATGCAGTGTGACTCATGTATATGTGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGAGGTTGTTTCACACATGCAGTGTGACTCATGTATATGTGAAT  1033

seq1  TC  1051
      ||
seq2  TC  1035


| Home | SequenceCutter | Blast | Download |