BAC Information

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BAC

Clone NameB6Ng01-240H05
Chromosome1 (Build37)
Map Location 131,279,702 - 131,280,804
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneDars, LOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H05.bB6Ng01-240H05.g
ACCGA050618GA050619
length1,1851,097
definitionB6Ng01-240H05.b B6Ng01-240H05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaaaggggttatttgatt
ttcgggagtccaccttttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
ttttgtcttattgacggtatcttttgccttgcagaagctttgcaacttta
taaggtcccatttatcgattcttgatcttacagcacaagttattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcac
atttttctacatgataactgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgcattcacctctgggtcttcaattctattcaattgg
tctacttgtctatcactatacctgtaacatgcagtttttatcacaattgc
tctgtagtaaagcttttggtcaggcatggtgattccaccagaggttccct
tatccttgagaagagtttttgctatcctaggttttttgttattctagatg
aatatgctgattgccctttctatttcgttgaagaattgagttggaatttt
gatggggattgctttgaatctgtagattgcttttggcaagatagccattt
ttactatattgatcctgccaatccatgagcatgggagatctgtccatctt
ctaagatcttctttaatttctttcttcagagacttgaagttcttatcata
cagatctttcacttcccttagttagagtcacgtcaaggtattttatatta
tttgtgactattgagaaggtgttgtttcctaattcttctcagcctgttta
tcctttgtgtacagatggccattgactgtttgagtaatttttatatcagc
tacttcatgaagctgtttatcagactaaggagttctctgttgcattttta
ggcagtatatatactatcattcatctggcaaggtgaattggactcttcct
cacaattggatctccctttgatactcacctatgta
gaattctattgatgtgaaataaattaatagtaaaaatttaatgtctcata
gtttatatatcctattgggtctacatgtaatcatatgggttatttctagt
atatataatgctcatctcttagttctggctacaaaacacacttaaaaatc
cttcaccagacacaatacttttatttatttttcttaagaatacgttttta
tgctgaattaaaggtggaattgagatgtcttgtagacacatcttaatttg
gcttgaaataaattgagtcactttgattccgattaaaccttctggcaagg
aagtgtgctaccctagttagaatgactctgtcactggccagggcacttct
ttgctaataagtcacaggcaagtgggaatgagcacaggatgagaaagtta
catttagtctgtggactctgagagcagtgtgccttccatgatggaaatga
acacccaaggcagttatggttataattctgtctagaagtttctggaatta
acccagagcttggaatgaagcctcctatttctctgggatgaagtataaag
gctaaaagggcaaagaatattttgttgatctttaggaaactttctgcctt
gtaaagcacaagtatgggtattgctagggggtccttttctaggaaagatt
ttggtgtgaggttcagagaaaagcaaacctctctagattcagtatcagtg
ttgaaatcataaatatatccttaactgttttcttatgcacagcatattaa
tgttttctgtcaagtaaccttgaatagagtagaagatatatcattgtctg
actctcaatagcgtaccaaatcctgaattttgtcatctgtcaattcataa
tagcaatctgagcttcatccttcaagaaccattgaaaagatcatgagaac
caatggctggcctttgtggtcctatgaatgtctgtaacttcaactcacac
attggaaaaggtattttgctgcttaagtcctttcttagtctgagtgactc
cattagaccagaatgtggatttcttaagctcatagtcacttgacctattg
tcttcttctaagagaaatatttgctaggattctaagaactctctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131279702_131280804
seq2: B6Ng01-240H05.g_62_1158

seq1  GAATTCTATTGATGTGAAATAAATTAATAGTAAAAATTTAATGTCTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGATGTGAAATAAATTAATAGTAAAAATTTAATGTCTCATA  50

seq1  GTTTATATATCCTATTGGGTCTACATGTAATCATATGGGTTATTTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATCCTATTGGGTCTACATGTAATCATATGGGTTATTTCTAGT  100

seq1  ATATATAATGCTCATCTCTTAGTTCTGGCTACAAAACACACTTAAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATGCTCATCTCTTAGTTCTGGCTACAAAACACACTTAAAAATC  150

seq1  CTTCACCAGACACAATACTTTTATTTATTTTTCTTAAGAATACGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGACACAATACTTTTATTTATTTTTCTTAAGAATACGTTTTTA  200

seq1  TGCTGAATTAAAGGTGGAATTGAGATGTCTTGTAGACACATCTTAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATTAAAGGTGGAATTGAGATGTCTTGTAGACACATCTTAATTTG  250

seq1  GCTTGAAATAAATTGAGTCACTTTGATTCCGATTAAACCTTCTGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATAAATTGAGTCACTTTGATTCCGATTAAACCTTCTGGCAAGG  300

seq1  AAGTGTGCTACCCTAGTTAGAATGACTCTGTCACTGGCCAGGGCACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTACCCTAGTTAGAATGACTCTGTCACTGGCCAGGGCACTTCT  350

seq1  TTGCTAATAAGTCACAGGCAAGTGGGAATGAGCACAGGATGAGAAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATAAGTCACAGGCAAGTGGGAATGAGCACAGGATGAGAAAGTTA  400

seq1  CATTTAGTCTGTGGACTCTGAGAGCAGTGTGCCTTCCATGATGGAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCTGTGGACTCTGAGAGCAGTGTGCCTTCCATGATGGAAATGA  450

seq1  ACACCCAAGGCAGTTATGGTTATAATTCTGTCTAGAAGTTTCTGGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAGGCAGTTATGGTTATAATTCTGTCTAGAAGTTTCTGGAATTA  500

seq1  ACCCAGAGCTTGGAATGAAGCCTCCTATTTCTCTGGGATGAAGTATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCTTGGAATGAAGCCTCCTATTTCTCTGGGATGAAGTATAAAG  550

seq1  GCTAAAAGGGCAAAGAATATTTTGTTGATCTTTAGGAAACTTTCTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGGGCAAAGAATATTTTGTTGATCTTTAGGAAACTTTCTGCCTT  600

seq1  GTAAAGCACAAGTATGGGTATTGCTAGGGGGTCCTTTTCTAGGAAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCACAAGTATGGGTATTGCTAGGGGGTCCTTTTCTAGGAAAGATT  650

seq1  TTGGTGTGAGGTTCAGAGAAAAGCAAACCTCTCTAGATTCAGTATCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGAGGTTCAGAGAAAAGCAAACCTCTCTAGATTCAGTATCAGTG  700

seq1  TTGAAATCATAAATATATCCTTAACTGTTTTCTTATGCACAGCATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCATAAATATATCCTTAACTGTTTTCTTATGCACAGCATATTAA  750

seq1  TGTTTTCTGTCAAGTAACCTTGAATAGAGTAGAAGATATATCATTGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTCAAGTAACCTTGAATAGAGTAGAAGATATATCATTGTCTG  800

seq1  ACTCTCAATAGCGTACCAAATCCTGAATTTTGTCATCTGTCAATTCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAATAGCGTACCAAATCCTGAATTTTGTCATCTGTCAATTCATAA  850

seq1  TAGCAATCTGAGCTTCATCCTTCAAGAACCATTGAAAAGATCATGAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCTGAGCTTCATCCTTCAAGAACCATTGAAAAGATCATGAGAAC  900

seq1  CAATGGCTGGCCTTTGTGGTCCTATGAAATGTCTGTAACTTCAAACTCAC  950
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CAATGGCTGGCCTTTGTGGTCCTATG-AATGTCTGTAACTTC-AACTCAC  948

seq1  ACATTGG-AAAGGTATTTTGCTGCTTAAGTCCTTTCTTTAGTCTGAGTGA  999
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  ACATTGGAAAAGGTATTTTGCTGCTTAAGTCCTTTC-TTAGTCTGAGTGA  997

seq1  CTCCATTAGAACCAGAATGTGGATTTCTAAAGCTTCATAGTCAACTTGAC  1049
      ||||||||| |||||||||||||||||| |||| |||||||| |||||||
seq2  CTCCATTAG-ACCAGAATGTGGATTTCTTAAGC-TCATAGTC-ACTTGAC  1044

seq1  CTTAATTGTC-TCTTCTAGGAGGAAAATATTTGCTAGGATTCTA--GACT  1096
      ||  |||||| ||||||| |||  ||||||||||||||||||||   |||
seq2  CT--ATTGTCTTCTTCTAAGAG--AAATATTTGCTAGGATTCTAAGAACT  1090

seq1  CTCTTTG  1103
      |||||||
seq2  CTCTTTG  1097