BAC Information

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BAC

Clone NameB6Ng01-240M24
Chromosome1 (Build37)
Map Location 25,961,579 - 26,110,671
singlet/doubletdoublet
Overlap genenone
Upstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240M24.bB6Ng01-240M24.g
ACCGA050884GA050885
length1,1241,001
definitionB6Ng01-240M24.b B6Ng01-240M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,961,579 - 25,962,715)(26,110,111 - 26,110,671)
sequence
gaattctctatagaggaaaataatattatgcaagtctgaatttttttctc
catattttccatacaatattcatcactcaatcaaaattaaccagacatgt
caagaatataataatgtgatttttagccataacaaataatggataattga
aacagaaccactgggaatttagataatggagatgataaagcaggcctaaa
tgcttaatatgcacatggaaatatatgctacaatgaaaaacttcagcaga
taataggaaaccaagaaagagcttaagtagaaattcgaaaacagaaaaac
ccactaaaatgagttaagcaaaagggagaccatgataaaacacacgatga
ttatttctgagtttgaggccagcttggtctacagagtgggttccaggaca
gccatggctacacagagaaaccctgtctcgaaaaaccaaaaccaaaccaa
accaaaccaaaacaaaaattcctatcttaagaagacactttttttaaatg
tttaaatttgcgtttaattagcataaaattgattgataaagttctgtaaa
gtaagttgaatagaaataacctgataagatgatatcttaaaatcacatga
gcactaataatgttgcaaaaatattgaacacttaagaaggaaatataagg
gaatggggatatgatttattcagtaaaagtgcttgtgaacaagctcgaac
atctaagttcatatacctagcacccatggaaaaaaaaaaaacaagaatag
ctttgaatgatgaatctcagcactgggaatttaggaccagaactatccct
gggacttgctgagtagccaaccaacccaataactaatctttaggttcaga
taaagagtttatttcaaaatatgttgagggagtgattgaggaagacacct
gaagtcaactattggcctgtacatacatacatgtgtgtcagcccaataca
tatacacacatatacatatgtctacaaataaaggcagaagcaaacaaaaa
gaaataaacatagagtatttgtggggtaaagcagtaaacaatccacataa
gctgtaggtacaattatagccccatctcattcactccatcatgaattcta
ttactgcaagatcaatttgttttc

gaattcctttcaagtatcatcacacaagcattataagtaatattgattag
tgttatagtagaactgagaggactgagccaggccaactccatgacaggct
acaaactaccatttcaagaatctaggcctgtttctgtttctcagaattga
ggtcatctaggcaagtccggtcctgaaaaaaaactcagcactcaggcagc
taatcaagggctacctccatctggcctgcggtaaaaatagtcactcagaa
tgagtcagcagcagttttcaagaacccccagcaacaattctggaaagtcc
ccatagccctcacaattcccaaagacacccataaccctagagacaaggcc
aaacaatcaagataaaaagtcacctaacaaacttggaataccctctaatg
tactttaaattgaacctgtgaggtcactttctggtcttcatttacatgaa
tggtagacacatgcatgcaggctttctgcacaatttaagctctttgcttt
tgcatactatttgagtctgggttaccactccctgcggattcaaagaccct
tacaaaactatatctaaagcattcctacttttaagcatatcatttaaagt
atactttattttagatactggtatacttgattttacactgatctctcatc
tagcattgattattgctctatggtttgaataaaattttatgtcaagaatt
ttaaagcagaattaataatactaaccctggcaatgtaattatgcataaag
tcaaaattacacacacacaattgtacatattgaacaaatagtaattatta
ttaatgacatttattatgctttataacactcttcctctcttgagttctca
cattaatttgtgatggagtcacagagttttgtgtacactctccagtaact
taggagagcaggttaaaaaggttaagatctgtcttgctgcttttgaaatg
aatggttattactatagaggcagtgttttgggtaatgaatttactaaaca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25961579_25962715
seq2: B6Ng01-240M24.b_46_1169

seq1  GAATTCTCTATAGAGGAAAATAATATTATGCAAGTCTGAATTTTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAGAGGAAAATAATATTATGCAAGTCTGAATTTTTTTCTC  50

seq1  CATATTTTCCATACAATATTCATCACTCAATCAAAATTAACCAGACATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCCATACAATATTCATCACTCAATCAAAATTAACCAGACATGT  100

seq1  CAAGAATATAATAATGTGATTTTTAGCCATAACAAATAATGGATAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATAATAATGTGATTTTTAGCCATAACAAATAATGGATAATTGA  150

seq1  AACAGAACCACTGGGAATTTAGATAATGGAGATGATAAAGCAGGCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACCACTGGGAATTTAGATAATGGAGATGATAAAGCAGGCCTAAA  200

seq1  TGCTTAATATGCACATGGAAATATATGCTACAATGAAAAACTTCAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATATGCACATGGAAATATATGCTACAATGAAAAACTTCAGCAGA  250

seq1  TAATAGGAAACCAAGAAAGAGCTTAAGTAGAAATTCGAAAACAGAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAACCAAGAAAGAGCTTAAGTAGAAATTCGAAAACAGAAAAAC  300

seq1  CCACTAAAATGAGTTAAGCAAAAGGGAGACCATGATAAAACACACGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAATGAGTTAAGCAAAAGGGAGACCATGATAAAACACACGATGA  350

seq1  TTATTTCTGAGTTTGAGGCCAGCTTGGTCTACAGAGTGGGTTCCAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGAGTTTGAGGCCAGCTTGGTCTACAGAGTGGGTTCCAGGACA  400

seq1  GCCATGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCAAACCAA  450

seq1  ACCAAACCAAAACAAAAATTCCTATCTTAAGAAGACACTTTTTTTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAAACAAAAATTCCTATCTTAAGAAGACACTTTTTTTAAATG  500

seq1  TTTAAATTTGCGTTTAATTAGCATAAAATTGATTGATAAAGTTCTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTGCGTTTAATTAGCATAAAATTGATTGATAAAGTTCTGTAAA  550

seq1  GTAAGTTGAATAGAAATAACCTGATAAGATGATATCTTAAAATCACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGAATAGAAATAACCTGATAAGATGATATCTTAAAATCACATGA  600

seq1  GCACTAATAATGTTGCAAAAATATTGAACACTTAAGAAGGAAATATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATAATGTTGCAAAAATATTGAACACTTAAGAAGGAAATATAAGG  650

seq1  GAATGGGGATATGATTTATTCAGTAAAAGTGCTTGTGAACAAGCTCGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGATATGATTTATTCAGTAAAAGTGCTTGTGAACAAGCTCGAAC  700

seq1  ATCTAAGTTCATATACCTAGCACCCATGGAAAAAAAAAAAACAAGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTTCATATACCTAGCACCCATGGAAAAAAAAAAAACAAGAATAG  750

seq1  CTTTGAATGATGAATCTCAGCACTGGGAATTTAGGACCAGAACTATCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGATGAATCTCAGCACTGGGAATTTAGGACCAGAACTATCCCT  800

seq1  GGGACTTGCTGAGTAGCCAACCAACCCAATAACTAATCTTTAGGTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGCTGAGTAGCCAACCAACCCAATAACTAATCTTTAGGTTCAGA  850

seq1  TAAAGAGTTTATTTCAAAATATGTTGAGGGAGTGATTGAGGAAGACACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTTATTTCAAAATATGTTGAGGGAGTGATTGAGGAAGACACCT  900

seq1  GAAGTCAACTATTGGCCTGTACATACATACATGTGTGTCAGCCCAAATAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGTCAACTATTGGCCTGTACATACATACATGTGTGTCAGCCC-AATAC  949

seq1  ATATACACACATATACATATGTCTACAAATAAAAGGCAGAAGCAAACAAA  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATACACACATATACATATGTCTACAAAT-AAAGGCAGAAGCAAACAAA  998

seq1  AAGAAATAAACATAAGAGTATTTGTTGGGTAAAGCAGTAAACAATCACAA  1050
      ||||||||||||| ||||||||||| ||||||||||||||||||||   |
seq2  AAGAAATAAACAT-AGAGTATTTGTGGGGTAAAGCAGTAAACAATCCACA  1047

seq1  TTAGCTGTAGGTACAATTAATAGCCCCATCTCATTCACTCCAATTCATGA  1100
      | |||||||||||||||| |||||||||||||||||||||||  ||||| 
seq2  TAAGCTGTAGGTACAATT-ATAGCCCCATCTCATTCACTCCA--TCATG-  1093

seq1  AATTCTATTAACTGCCAAAAGATTAAATTTTGTTTTC  1137
      ||||||||| |||||   ||||| ||  |||||||||
seq2  AATTCTATT-ACTGC---AAGATCAA--TTTGTTTTC  1124


seq1: chr1_26110111_26110671
seq2: B6Ng01-240M24.g_66_626 (reverse)

seq1  ATAGTTTTGTAAGGGTCTTTGAATCCGCAGGGAGTGGTAACCCAGACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGTAAGGGTCTTTGAATCCGCAGGGAGTGGTAACCCAGACTCA  50

seq1  AATAGTATGCAAAAGCAAAGAGCTTAAATTGTGCAGAAAGCCTGCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATGCAAAAGCAAAGAGCTTAAATTGTGCAGAAAGCCTGCATGCA  100

seq1  TGTGTCTACCATTCATGTAAATGAAGACCAGAAAGTGACCTCACAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTACCATTCATGTAAATGAAGACCAGAAAGTGACCTCACAGGTTC  150

seq1  AATTTAAAGTACATTAGAGGGTATTCCAAGTTTGTTAGGTGACTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGTACATTAGAGGGTATTCCAAGTTTGTTAGGTGACTTTTTAT  200

seq1  CTTGATTGTTTGGCCTTGTCTCTAGGGTTATGGGTGTCTTTGGGAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTTTGGCCTTGTCTCTAGGGTTATGGGTGTCTTTGGGAATTGT  250

seq1  GAGGGCTATGGGGACTTTCCAGAATTGTTGCTGGGGGTTCTTGAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTATGGGGACTTTCCAGAATTGTTGCTGGGGGTTCTTGAAAACTG  300

seq1  CTGCTGACTCATTCTGAGTGACTATTTTTACCGCAGGCCAGATGGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTCATTCTGAGTGACTATTTTTACCGCAGGCCAGATGGAGGTA  350

seq1  GCCCTTGATTAGCTGCCTGAGTGCTGAGTTTTTTTTCAGGACCGGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGATTAGCTGCCTGAGTGCTGAGTTTTTTTTCAGGACCGGACTTG  400

seq1  CCTAGATGACCTCAATTCTGAGAAACAGAAACAGGCCTAGATTCTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGACCTCAATTCTGAGAAACAGAAACAGGCCTAGATTCTTGAAA  450

seq1  TGGTAGTTTGTAGCCTGTCATGGAGTTGGCCTGGCTCAGTCCTCTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTTGTAGCCTGTCATGGAGTTGGCCTGGCTCAGTCCTCTCAGTT  500

seq1  CTACTATAACACTAATCAATATTACTTATAATGCTTGTGTGATGATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATAACACTAATCAATATTACTTATAATGCTTGTGTGATGATACTT  550

seq1  GAAAGGAATTC  561
      |||||||||||
seq2  GAAAGGAATTC  561


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