BAC Information

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BAC

Clone NameB6Ng01-241M07
Chromosome1 (Build37)
Map Location 26,714,555 - 26,821,329
singlet/doubletdoublet
Overlap gene4931408C20Rik
Upstream geneBai3
Downstream geneLOC677427, LOC100040952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241M07.bB6Ng01-241M07.g
ACCGA051599GA051600
length1,027653
definitionB6Ng01-241M07.b B6Ng01-241M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,820,305 - 26,821,329)(26,714,555 - 26,715,201)
sequence
gaattctactaaactctacataagtcataacaaaaccttttttattagat
attttccttatttacatttcaaatgttatcctctttcctggtttccaatt
gaaaagcccctatcccctcctccttcccctgctcaccaaaacttttaaat
taaaagagctttaacctaaggcatgcataggaagtggtaaagatatattg
ataccatcaacatgatgaatatgcaatacagaaaaatacataaatgaagc
taataatttaaattcataatatgaattaaagaaaatgtaaaaatgtttga
agttctgtgggtttcattagtataggaagtgtttagaaatataatacata
ttgtgaaaagagattctaaaattttaaacaatggtaaactttccactatt
ttatcagttaatcttcagaacagcattccccctaagcaatattttcacag
atattagtggtctaattttggtagaaagctcacatggcaaatttgaaact
tagaaaattttgaatacaactcttggcttgagatacaatttcattaatac
ttagtaattatgatgatatgattattttaggttttttttttttttttttt
tttttttttgagacagggtttctctgtatagtcctggctgtcctagaact
cactctgtagaccaggctggcctccaactcagaaatctacctatctctgc
ctcccaagtgctgggattaaagggtgtgtgccaccatgcccggctatgat
gatatgatttttaaaatacaaaatagtgcatattgataactaccttgact
attttactcaattactgagtaaattttacctatttatattctagaaagtt
gaaattgccattttattaagggaatgcagctaaaggcatgatattagatt
acatatacatatatatcattttggttctataaaaaaatgtagttaggtgg
catctatatgacgtagtttacaggaatacttatatgggagatggaaaggg
tgtatttgagctctttttcaatcaaat

gaattcacttcagctctagtacagagtgggagaacaaaaaaaaaaaaaca
aaacaaaaaaaaacaaaacaaaaaacaaaaaacacaatgtttcactgctc
ttaattatctgaactggaactaagagtaatttaaacgtgtttaattatag
tgatattcaaagtatttttggacactgagaaataaaacaaatttaaataa
tttaatttaaataatttttataattctgagttaatgtctactaattaata
gcagtatgccatttgaaattttaaaattaaaattaattaagaattatact
aacgcatataaagtttgtaagaccaaggggcctctcttcccaatgatggc
caactaggccatcttctgatacatatgcagctagagacacgagctccggg
gggtactggttagttaatattgttgttccacctatagggttgcagacctc
tttagctccttgggtactttctctagctcctccattggggggggggtcag
ggtatgggggacttttgggataacatttgaaatgtaaatgaagaaaatac
ttaattaaaaaaaaaaagaaaaagtatctagcattggatttttcaatcct
ttataacattttcatttaatattctctttagatgaaataagccaagacaa
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26820305_26821329
seq2: B6Ng01-241M07.b_49_1075 (reverse)

seq1  ATTTGATGGAAAAAGAGCTTAAAAAATACACC--TTTCATCTCCATTATA  48
      ||||||| |||||||||||    |||||||||  || |||||||  ||| 
seq2  ATTTGATTGAAAAAGAGCT---CAAATACACCCTTTCCATCTCCCATAT-  46

seq1  AAGTATT-CTGTAAACTACGTCATATAGATGGCACTTAACTACATTTTTT  97
      ||||||| ||||||||||||||||||||||| ||| ||||||||||||||
seq2  AAGTATTCCTGTAAACTACGTCATATAGATGCCACCTAACTACATTTTTT  96

seq1  TATAGAACAAAAATGATATATATGTATATGTAATCTAATATCATGCTTTT  147
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TATAGAACCAAAATGATATATATGTATATGTAATCTAATATCATGCCTTT  146

seq1  AGCTGCATTCCTTTAAT-AAATGGCAATTTC-ACTTTCTAGAATATAAAT  195
      ||||||||||| ||||| ||||||||||||| ||||||||||||||||||
seq2  AGCTGCATTCCCTTAATAAAATGGCAATTTCAACTTTCTAGAATATAAAT  196

seq1  AGGTAAAATTTACTCAGTAATTGAGTAAAATAGTCAAGGTAGTTATCAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAATTTACTCAGTAATTGAGTAAAATAGTCAAGGTAGTTATCAAT  246

seq1  ATGCACTATTTTGTATTTTAAAAATCATATCATCATAGCCGGGCATGGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTATTTTGTATTTTAAAAATCATATCATCATAGCCGGGCATGGTG  296

seq1  GCACACA-CCTTTAATCCCAGCACTTGGGAGGCAGAGATAGGTAGATTTC  344
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCCTTTAATCCCAGCACTTGGGAGGCAGAGATAGGTAGATTTC  346

seq1  TGAGTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGA  396

seq1  CTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA  446

seq1  CCTAAAATAATCATATCATCATAATTACTAAGTATTAATGAAATTGTATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATAATCATATCATCATAATTACTAAGTATTAATGAAATTGTATC  496

seq1  TCAAGCCAAGAGTTGTATTCAAAATTTTCTAAGTTTCAAATTTGCCATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCAAGAGTTGTATTCAAAATTTTCTAAGTTTCAAATTTGCCATGT  546

seq1  GAGCTTTCTACCAAAATTAGACCACTAATATCTGTGAAAATATTGCTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCTACCAAAATTAGACCACTAATATCTGTGAAAATATTGCTTAG  596

seq1  GGGGAATGCTGTTCTGAAGATTAACTGATAAAATAGTGGAAAGTTTACCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCTGTTCTGAAGATTAACTGATAAAATAGTGGAAAGTTTACCA  646

seq1  TTGTTTAAAATTTTAGAATCTCTTTTCACAATATGTATTATATTTCTAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAATTTTAGAATCTCTTTTCACAATATGTATTATATTTCTAAA  696

seq1  CACTTCCTATACTAATGAAACCCACAGAACTTCAAACATTTTTACATTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTATACTAATGAAACCCACAGAACTTCAAACATTTTTACATTTT  746

seq1  CTTTAATTCATATTATGAATTTAAATTATTAGCTTCATTTATGTATTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCATATTATGAATTTAAATTATTAGCTTCATTTATGTATTTTT  796

seq1  CTGTATTGCATATTCATCATGTTGATGGTATCAATATATCTTTACCACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGCATATTCATCATGTTGATGGTATCAATATATCTTTACCACTT  846

seq1  CCTATGCATGCCTTAGGTTAAAGCTCTTTTAATTTAAAAGTTTTGGTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCATGCCTTAGGTTAAAGCTCTTTTAATTTAAAAGTTTTGGTGAG  896

seq1  CAGGGGAAGGAGGAGGGGATAGGGGCTTTTCAATTGGAAACCAGGAAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAGGAGGAGGGGATAGGGGCTTTTCAATTGGAAACCAGGAAAGA  946

seq1  GGATAACATTTGAAATGTAAATAAGGAAAATATCTAATAAAAAAGGTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATTTGAAATGTAAATAAGGAAAATATCTAATAAAAAAGGTTTT  996

seq1  GTTATGACTTATGTAGAGTTTAGTAGAATTC  1025
      |||||||||||||||||||||||||||||||
seq2  GTTATGACTTATGTAGAGTTTAGTAGAATTC  1027


seq1: chr1_26714555_26715201
seq2: B6Ng01-241M07.g_65_717

seq1  GAATTCACTTCAGCTCTAGTACAGAGTGGGAGAACAAAAAAAAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGCTCTAGTACAGAGTGGGAGAACAAAAAAAAAAAAACA  50

seq1  AAACAAAAAAAAACAAAACAAAAAACAAAAAACACAATGTTTCACTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAAACAAAACAAAAAACAAAAAACACAATGTTTCACTGCTC  100

seq1  TTAATTATCTGAACTGGAACTAAGAGTAATTTAAACGTGTTTAATTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATCTGAACTGGAACTAAGAGTAATTTAAACGTGTTTAATTATAG  150

seq1  TGATATTCAAAGTATTTTTGGACACTGAGAAATAAAACAAATTTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAAAGTATTTTTGGACACTGAGAAATAAAACAAATTTAAATAA  200

seq1  TTTAATTTAAATAATTTTTATAATTCTGAGTTAATGTCTACTAATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAAATAATTTTTATAATTCTGAGTTAATGTCTACTAATTAATA  250

seq1  GCAGTATGCCATTTGAAATTTTAAAATTAAAATTAATTAAGAATTATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGCCATTTGAAATTTTAAAATTAAAATTAATTAAGAATTATACT  300

seq1  AACGCATATAAAGTTTGTAAGACCAAGGGGCCTCTCTTCCCAATGATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATATAAAGTTTGTAAGACCAAGGGGCCTCTCTTCCCAATGATGGC  350

seq1  CAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCCGGG  400

seq1  GGGTACTGGTTAGTTAATATTGTTGTTCCACCTATAGGGTTGCAGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGTTAGTTAATATTGTTGTTCCACCTATAGGGTTGCAGACCTC  450

seq1  TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGGGGGGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGGGGGGTCAG  500

seq1  GGTATGGGGGACTTTTGGGATAACATTTGAAATGTAAATGAAGAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGGGACTTTTGGGATAACATTTGAAATGTAAATGAAGAAAATAC  550

seq1  TTAATTAAAAAAAAA---GAAAAGTATACTAGCATTGGATTTTCTAATCC  597
      |||||||||||||||    |||||||| |||||||||||||||  |||||
seq2  TTAATTAAAAAAAAAAAGAAAAAGTAT-CTAGCATTGGATTTTTCAATCC  599

seq1  -TTATAACA-TTTCATTT-ATATTTTCTTAGTATG-AATAAGCCAAGACA  643
       |||||||| |||||||| ||||| ||||   ||| ||||||||||||||
seq2  TTTATAACATTTTCATTTAATATTCTCTTTAGATGAAATAAGCCAAGACA  649

seq1  AACT  647
      ||||
seq2  AACT  653


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