BAC Information

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BAC

Clone NameB6Ng01-241M17
Chromosome1 (Build37)
Map Location 136,768,658 - 136,901,413
singlet/doubletdoublet
Overlap genePpp1r12b, Ube2t, Lgr6
Upstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
Downstream genePtprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241M17.bB6Ng01-241M17.g
ACCGA051619GA051620
length1,077853
definitionB6Ng01-241M17.b B6Ng01-241M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,768,658 - 136,769,736)(136,900,568 - 136,901,413)
sequence
gaattcaaagtaagcaatgaaaaacagattcttctatatcagcagcagaa
ttcaaactgaaatagtattaagtgtctctcgtagcttaatggttctggca
gaggtgctttgcttgctggctagcttgtggcaaaggaaataattgcagaa
aagatagtacagatgagatcaaaagaaacccgtgtaccttctctgcacac
caaacttgcgagtttcacatcttgatggatctgagggccattaaagtcat
aaaaaaacaaaaacaactcaagtccctaaattaacaggctcaatatgaaa
tgtcttaaatccaacagaaaactgtccccattgcccactccttaccgccc
ggtgatgccctccccctcccaaccctcaattgtaaagtctgatgaaacaa
ctctagttttacacaagggaaagccaggactaggcaagaacgcatctctc
ccactttccccagaggtcaccagatgctgcttcagactgcagttttaata
gggctgaaaggatggagtgtaaagtcaggtctgtggaggggatcggaatg
ggcttatgttaactcattaaaagaacaattaatcttaaattagtgaaaat
gttgatcccaaggaacctaaaagccattcgtttttatggtgctaattgga
tataaaagcatgcacgcattacccatacccatggtcagagtgaagaagtc
acctcccacccatctgcagctggtaccttttcaagtaagttgacgtgtaa
gtggaaggagcgattgtctgtggggtttcacttccctttgcttcatccct
ccacagctgcctggtatgggagccactccttactagattaacagctgact
ctctgtagaggcaagaaagaacaccaacaacatagtgattcccacaccaa
tctggactatataaagaaagaaagccaaacggaaaactaacacgctaaga
aacaggcacatttttcaagtgatcctggtttgtttgttttttctatacta
ctgtgggctttcctctatcgacatttaagccatctcatcccaccttagga
accaaattcttacttcacaccaacagc
gaattcagaatgactgctcactgtggactgagttctcctgagcctggtct
cagtggatgagtgggattcaggtgacaatgagggtggaagggaacagttg
ttttagtcagtagagcagtacaaagcacagacctgacaggaagtggttaa
ggcagaaagaatgaccacagaagggacaccaaccttgatgggggtgtgct
cagtgacctcagagatctaatatacagctatactagaatccaaataggga
gacaaggagcttcatggttttcttttttggagaaaaaaaaggtacacatt
taggtatgagtccatccatccatttatccaaccatgcatccatccatgca
tgcatgcatccatcatctactgagagaaacctgcttgaggacagggcctc
tatcatgtaaatttctcagcctctcagaacttaacctagcctaagacatg
aaagagatattccaataaacatggtgagtagaaggaaagaaccaacgagc
cttggtgggcagcactggccagagatatctgaggaggagccttgagtgac
tgagcatggaggtgaaagggatgatgggaaacaggagatggagagaagtg
agcatgtgctaggtacgacacagaaagccagagacttccagtaggagggg
gagtgttgagaggttgggaaagcttcctagcgacacatacacactgttcc
gggcttccagacacccggttggggaacttcatttgctcaccaccccatgg
atgcaatctgtggccactgaccggactctgtcctttattctccttccttt
gctctgtccccacctttgtgtttcttctactttaatgagcctttgtcacc
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136768658_136769736
seq2: B6Ng01-241M17.b_49_1125

seq1  GAATTCAAAGTAAGCAATGAAAAACAGATTCTTCTATATCAGCAGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAGCAATGAAAAACAGATTCTTCTATATCAGCAGCAGAA  50

seq1  TTCAAACTGAAATAGTATTAAGTGTCTCTCGTAGCTTAATGGTTCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGAAATAGTATTAAGTGTCTCTCGTAGCTTAATGGTTCTGGCA  100

seq1  GAGGTGCTTTGCTTGCTGGCTAGCTTGTGGCAAAGGAAATAATTGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTTTGCTTGCTGGCTAGCTTGTGGCAAAGGAAATAATTGCAGAA  150

seq1  AAGATAGTACAGATGAGATCAAAAGAAACCCGTGTACCTTCTCTGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTACAGATGAGATCAAAAGAAACCCGTGTACCTTCTCTGCACAC  200

seq1  CAAACTTGCGAGTTTCACATCTTGATGGATCTGAGGGCCATTAAAGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGCGAGTTTCACATCTTGATGGATCTGAGGGCCATTAAAGTCAT  250

seq1  AAAAAAACAAAAACAACTCAAGTCCCTAAATTAACAGGCTCAATATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACAACTCAAGTCCCTAAATTAACAGGCTCAATATGAAA  300

seq1  TGTCTTAAATCCAACAGAAAACTGTCCCCATTGCCCACTCCTTACCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAATCCAACAGAAAACTGTCCCCATTGCCCACTCCTTACCGCCC  350

seq1  GGTGATGCCCTCCCCCTCCCAACCCTCAATTGTAAAGTCTGATGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCCCTCCCCCTCCCAACCCTCAATTGTAAAGTCTGATGAAACAA  400

seq1  CTCTAGTTTTACACAAGGGAAAGCCAGGACTAGGCAAGAACGCATCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTTTACACAAGGGAAAGCCAGGACTAGGCAAGAACGCATCTCTC  450

seq1  CCACTTTCCCCAGAGGTCACCAGATGCTGCTTCAGACTGCAGTTTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCCCAGAGGTCACCAGATGCTGCTTCAGACTGCAGTTTTAATA  500

seq1  GGGCTGAAAGGATGGAGTGTAAAGTCAGGTCTGTGGAGGGGATCGGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAAGGATGGAGTGTAAAGTCAGGTCTGTGGAGGGGATCGGAATG  550

seq1  GGCTTATGTTAACTCATTAAAAGAACAATTAATCTTAAATTAGTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATGTTAACTCATTAAAAGAACAATTAATCTTAAATTAGTGAAAAT  600

seq1  GTTGATCCCAAGGAACCTAAAAGCCATTCGTTTTTATGGTGCTAATTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCCAAGGAACCTAAAAGCCATTCGTTTTTATGGTGCTAATTGGA  650

seq1  TATAAAAGCATGCACGCATTACCCATACCCATGGTCAGAGTGAAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGCATGCACGCATTACCCATACCCATGGTCAGAGTGAAGAAGTC  700

seq1  ACCTCCCACCCATCTGCAGCTGGTACCTTTTCAAGTAAGTTGACGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCACCCATCTGCAGCTGGTACCTTTTCAAGTAAGTTGACGTGTAA  750

seq1  GTGGAAGGAGCGATTGTCTGTGGGGTTTCACTTCCCTTTGCTTCATCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGAGCGATTGTCTGTGGGGTTTCACTTCCCTTTGCTTCATCCCT  800

seq1  CCACAGCTGCCTGGTATGGGAGCCACTCCTTACTAGATTAACAGCTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTGCCTGGTATGGGAGCCACTCCTTACTAGATTAACAGCTGACT  850

seq1  CTCTGTAGAGGCAAGAAAGAACACCAACAACATAGTGATTCCCACACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGAGGCAAGAAAGAACACCAACAACATAGTGATTCCCACACCAA  900

seq1  TCTGGACTATATAAAGAAAGAAAAGCCAAACGGAAAACTAACACGCTAAA  950
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TCTGGACTATATAAAGAAAG-AAAGCCAAACGGAAAACTAACACGCT-AA  948

seq1  GAAACAGGCACATTTTTCAAGTGATCCTGGTTTGTTTGTTTTTTTCTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  GAAACAGGCACATTTTTCAAGTGATCCTGGTTTGTTTGTTTTTT--CTAT  996

seq1  ACTACTGTTGGCTTTCTTCTATCGACATTAAAGCCATCTCATCCCAC--T  1048
      |||||||| ||||||| |||||||||||| |||||||||||||||||  |
seq2  ACTACTGTGGGCTTTCCTCTATCGACATTTAAGCCATCTCATCCCACCTT  1046

seq1  AGGAACCAAATTC-TACTTCACACCAAACAGC  1079
      ||||||||||||| ||||||||||| ||||||
seq2  AGGAACCAAATTCTTACTTCACACC-AACAGC  1077

seq1: chr1_136900568_136901413
seq2: B6Ng01-241M17.g_68_920 (reverse)

seq1  CTGGGTGACAGAGGCTC-CTAAAGT-GAAGAAACACAGAGGTGGGGACAG  48
      |||||||||| ||||||  |||||| ||||||||||| ||||||||||||
seq2  CTGGGTGACAAAGGCTCATTAAAGTAGAAGAAACACAAAGGTGGGGACAG  50

seq1  AGCAATGG-AGGAG-ATAAAGGACAGAGTCCGGTCAGTGGCCACAGATTG  96
      ||||| || ||||| |||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGAAGGAGAATAAAGGACAGAGTCCGGTCAGTGGCCACAGATTG  100

seq1  CATCCAT-GGGTGGTGAGC-AATGAAGTTCCCC-ACCGGGTGTCTGGAAG  143
      ||||||| ||||||||||| ||||||||||||| ||||||||||||||||
seq2  CATCCATGGGGTGGTGAGCAAATGAAGTTCCCCAACCGGGTGTCTGGAAG  150

seq1  CCCGGAACAGTGTGTTTGTGTCGCTAGGAAGCTTTCCCAACCTCTCAACA  193
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCGGAACAGTGTGTATGTGTCGCTAGGAAGCTTTCCCAACCTCTCAACA  200

seq1  CTCCCCCTCCTACTGGAAGTCTCTGGCTTTCTGTGTCGTACCTAGCACAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCCTACTGGAAGTCTCTGGCTTTCTGTGTCGTACCTAGCACAT  250

seq1  GCTCACTTCTCTCCATCTCCTGTTTCCCATCATCCCTTTCACCTCCATGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCTCTCCATCTCCTGTTTCCCATCATCCCTTTCACCTCCATGC  300

seq1  TCAGTCACTCAAGGCTCCTCCTCAGATATCTCTGGCCAGTGCTGCCCACC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTCAAGGCTCCTCCTCAGATATCTCTGGCCAGTGCTGCCCACC  350

seq1  AAGGCTCGTTGGTTCTTTCCTTCTACTCACCATGTTTATTGGAATATCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCGTTGGTTCTTTCCTTCTACTCACCATGTTTATTGGAATATCTC  400

seq1  TTTCATGTCTTAGGCTAGGTTAAGTTCTGAGAGGCTGAGAAATTTACATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTCTTAGGCTAGGTTAAGTTCTGAGAGGCTGAGAAATTTACATG  450

seq1  ATAGAGGCCCTGTCCTCAAGCAGGTTTCTCTCAGTAGATGATGGATGCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCCCTGTCCTCAAGCAGGTTTCTCTCAGTAGATGATGGATGCAT  500

seq1  GCATGCATGGATGGATGCATGGTTGGATAAATGGATGGATGGACTCATAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGGATGGATGCATGGTTGGATAAATGGATGGATGGACTCATAC  550

seq1  CTAAATGTGTACCTTTTTTTTCTCCAAAAAAGAAAACCATGAAGCTCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTGTACCTTTTTTTTCTCCAAAAAAGAAAACCATGAAGCTCCTT  600

seq1  GTCTCCCTATTTGGATTCTAGTATAGCTGTATATTAGATCTCTGAGGTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTATTTGGATTCTAGTATAGCTGTATATTAGATCTCTGAGGTCA  650

seq1  CTGAGCACACCCCCATCAAGGTTGGTGTCCCTTCTGTGGTCATTCTTTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACACCCCCATCAAGGTTGGTGTCCCTTCTGTGGTCATTCTTTCT  700

seq1  GCCTTAACCACTTCCTGTCAGGTCTGTGCTTTGTACTGCTCTACTGACTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAACCACTTCCTGTCAGGTCTGTGCTTTGTACTGCTCTACTGACTA  750

seq1  AAACAACTGTTCCCTTCCACCCTCATTGTCACCTGAATCCCACTCATCCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTGTTCCCTTCCACCCTCATTGTCACCTGAATCCCACTCATCCA  800

seq1  CTGAGACCAGGCTCAGGAGAACTCAGTCCACAGTGAGCAGTCATTCTGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCAGGCTCAGGAGAACTCAGTCCACAGTGAGCAGTCATTCTGAA  850

seq1  TTC  846
      |||
seq2  TTC  853