BAC Information

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BAC

Clone NameB6Ng01-241O19
Chromosome1 (Build37)
Map Location 6,197,005 - 6,352,020
singlet/doubletdoublet
Overlap gene4732440D04Rik, Rb1cc1, EG620393
Upstream geneEG636659, Oprk1, Npbwr1
Downstream geneLOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O19.bB6Ng01-241O19.g
ACCGA051714GA051715
length1,1061,082
definitionB6Ng01-241O19.b B6Ng01-241O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,350,903 - 6,352,020)(6,197,005 - 6,198,087)
sequence
gaattccagagaaaaaaaaaaaaaaaagaaagaattccagaacttaagcc
taaaaacacaggcagggacacaagagacttctgctactctcacacgatta
cccagtgggagttccaggacattttaaaccacccctgaactcgttttttt
tttttcaccagctgaggctgggtaacattacaggttctactttagactaa
cagagggcaactgcaggcttgctcaacatggatgacagtcgttggcctcg
aggacttgggagacgcttcctcctggatgaattatgaccacttaccgctc
ctatgaaaacttcccgatgggaacttgtcttctctgcattcatgtccttg
cttttccttgatccatgtcaagagttccattcatagactcagatgtaacc
agtcaccctctctctccccatgtaaacaagatacagtaatcaaaagatga
ggccacctcaaacagctgtagaaagcaataaattttgagggtgagtcata
gctcattttctttgaggctatacggtttttacatcttctttgtcatttgg
gaggagaattgctggttgaatctaggcccgcatgtgttctaggatatagt
tctaccactgaactatatcccccaattttctccaatgtctttaaccagag
aaatcgcattaaactaaaataaaacaggtaaaattcatgtgttaccataa
gtgattttgcaatttgatgtttttctcacgttccgtttgtattctaaagc
aacactagtacctgagataaatagttttgttagcaataattttcaagtca
aagggtataataatgtgaaagcatcaaggtatgactcccccatactgaat
gcccctactgccttatctggagagcttccagataaataggtttggtctat
atccccttactagccttccatgtctttctgtcacttccctctgcttctct
cctgcctggctcactcagtctgtgtatgtgcacgcccctactctctctcc
ctcagacatgtagtgagacagacccacttgtcctctatcaatctctgatc
tcagttctctgcaaggtatgttactgggagattctcactagaagctaagg
tgactg

gaattcctgtcttattagtagtgtaattagtgtgtaacattcagaatgga
tgctttttaaataatttgttctaataacaaccataaaataaaagccatag
aaaggattaaacttttaagaatcaaaatttaaagaaaaatctataaaacc
aaaacattaaattattcaatattttttgctgagagttactatatagccct
ataggctaaggtggccagcctcaaggtcaagagtgttaggattaaaagca
agtgctattacacacttttttttttaaagatttattttatgtatatgagt
gcactgtagttgtacagatggttgtgaaccttcgtttggttgggaattga
atttaggacctctgcttgctctggtcaaccatgcttgctcaggtcggccc
tgctccctctggtccaaagatttatttattattataaatgagtacacttg
ctgtcttcagacacaccggagggcgccagatttcattatgggaggttgtg
agccaccatgtggttgctgggatttgaactcaggattcagaagaacagtc
agtgctcttacccactgagccatctcgccagccgactattacatttttaa
tatttatttaggatgttagagacacatgcttgttctagaattccctgtgt
agaccagaacagacttgaattcacagattcacctgctctgccttctgagt
gcaggattaaaattgtataccaccacagctagcaatatcttttagatttt
tttaagatctgttttgtttttgtttccgtttgtttgtttgagacagggtg
tctctgtatagccctggctgtcctggaactcactttgtagaccaagctgg
cctcgaactcagaaatctgcctgcctctgcctcccaagtgctaggattaa
aggcgtgtgccaccactgcccgggcaagaatctgttctactttacatttg
caccatgaatgtgactcgtgcttgcagaagctataagaagcactgaatcc
cccaaaattgagttacagaatggttaataagcattcttgtatgatctctg
caagcgcaagcacctttaatttgctaagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6350903_6352020
seq2: B6Ng01-241O19.b_43_1148 (reverse)

seq1  CAGTCACCCTATAGCTTCTAGTGAGAAATTCCTTCCCAGGTACATACCTT  50
      ||||||||   ||||||||||||||||  ||  ||||||  |||||||||
seq2  CAGTCACC--TTAGCTTCTAGTGAGAA--TC--TCCCAGTAACATACCTT  44

seq1  GCAGAGAACTGAGATCAAGAAGATGGATAGGAGGACAAGTGTGTCTGTCC  100
      |||||||||||||||||   |||| |||| ||||||||||| ||||||| 
seq2  GCAGAGAACTGAGATCA--GAGATTGATA-GAGGACAAGTGGGTCTGTC-  90

seq1  TTCACTACATGTCTGAGGGAGAGAGAGTAGGGGCGTGCACATACACAGAC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCACTACATGTCTGAGGGAGAGAGAGTAGGGGCGTGCACATACACAGAC  139

seq1  TGAGTGAGCCAGGCAGGGAGAGAAGCAGAGGGAAGTGACAGAAAGACATG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGCCAGGCA-GGAGAGAAGCAGAGGGAAGTGACAGAAAGACATG  188

seq1  GAAGGCTAGTAAGGGGATATAGACCAAACCTATTTATCTGGAAGCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTAGTAAGGGGATATAGACCAAACCTATTTATCTGGAAGCTCTCC  238

seq1  AGATAAGGCAGTAGGGGCATTCAGTATGGGGGAGTCATACCTTGATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGCAGTAGGGGCATTCAGTATGGGGGAGTCATACCTTGATGCTT  288

seq1  TCACATTATTATACCCTTTGACTTGAAAATTATTGCTAACAAAACTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTATTATACCCTTTGACTTGAAAATTATTGCTAACAAAACTATTT  338

seq1  ATCTCAGGTACTAGTGTTGCTTTAGAATACAAACGGAACGTGAGAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTACTAGTGTTGCTTTAGAATACAAACGGAACGTGAGAAAAAC  388

seq1  ATCAAATTGCAAAATCACTTATGGTAACACATGAATTTTACCTGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGCAAAATCACTTATGGTAACACATGAATTTTACCTGTTTTAT  438

seq1  TTTAGTTTAATGCGATTTCTCTGGTTAAAGACATTGGAGAAAATTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTAATGCGATTTCTCTGGTTAAAGACATTGGAGAAAATTGGGGG  488

seq1  ATATAGTTCAGTGGTAGAACTATATCCTAGAACACATGCGGGCCTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCAGTGGTAGAACTATATCCTAGAACACATGCGGGCCTAGATT  538

seq1  CAACCAGCAATTCTCCTCCCAAATGACAAAGAAGATGTAAAAACCGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCAATTCTCCTCCCAAATGACAAAGAAGATGTAAAAACCGTATA  588

seq1  GCCTCAAAGAAAATGAGCTATGACTCACCCTCAAAATTTATTGCTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAGAAAATGAGCTATGACTCACCCTCAAAATTTATTGCTTTCTA  638

seq1  CAGCTGTTTGAGGTGGCCTCATCTTTTGATTACTGTATCTTGTTTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTGAGGTGGCCTCATCTTTTGATTACTGTATCTTGTTTACATG  688

seq1  GGGAGAGAGAGGGTGACTGGTTACATCTGAGTCTATGAATGGAACTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGGGTGACTGGTTACATCTGAGTCTATGAATGGAACTCTTG  738

seq1  ACATGGATCAAGGAAAAGCAAGGACATGAATGCAGAGAAGACAAGTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATCAAGGAAAAGCAAGGACATGAATGCAGAGAAGACAAGTTCCC  788

seq1  ATCGGGAAGTTTTCATAGGAGCGGTAAGTGGTCATAATTCATCCAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGAAGTTTTCATAGGAGCGGTAAGTGGTCATAATTCATCCAGGAGG  838

seq1  AAGCGTCTCCCAAGTCCTCGAGGCCAACGACTGTCATCCATGTTGAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCTCCCAAGTCCTCGAGGCCAACGACTGTCATCCATGTTGAGCAA  888

seq1  GCCTGCAGTTGCCCTCTGTTAGTCTAAAGTAGAACCTGTAATGTTACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGTTGCCCTCTGTTAGTCTAAAGTAGAACCTGTAATGTTACCCA  938

seq1  GCCTCAGCTGGTGAAAAAAAAAAAACGAGTTCAGGGGTGGTTTAAAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGGTGAAAAAAAAAAAACGAGTTCAGGGGTGGTTTAAAATGT  988

seq1  CCTGGAACTCCCACTGGGTAATCGTGTGAGAGTAGCAGAAGTCTCTTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCCCACTGGGTAATCGTGTGAGAGTAGCAGAAGTCTCTTGTG  1038

seq1  TCCCTGCCTGTGTTTTTAGGCTTAAGTTCTGGAATTCTTTCTTTTTTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCTGTGTTTTTAGGCTTAAGTTCTGGAATTCTTTCTTTTTTTTT  1088

seq1  TTTTTTTCTCTGGAATTC  1118
      ||||||||||||||||||
seq2  TTTTTTTCTCTGGAATTC  1106


seq1: chr1_6197005_6198087
seq2: B6Ng01-241O19.g_67_1148

seq1  GAATTCCTGTCTTATTAGTAGTGTAATTAGTGTGTAACATTCAGAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTTATTAGTAGTGTAATTAGTGTGTAACATTCAGAATGGA  50

seq1  TGCTTTTTAAATAATTTGTTCTAATAACAACCATAAAATAAAAGCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAAATAATTTGTTCTAATAACAACCATAAAATAAAAGCCATAG  100

seq1  AAAGGATTAAACTTTTAAGAATCAAAATTTAAAGAAAAATCTATAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTAAACTTTTAAGAATCAAAATTTAAAGAAAAATCTATAAAACC  150

seq1  AAAACATTAAATTATTCAATATTTTTTGCTGAGAGTTACTATATAGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTAAATTATTCAATATTTTTTGCTGAGAGTTACTATATAGCCCT  200

seq1  ATAGGCTAAGGTGGCCAGCCTCAAGGTCAAGAGTGTTAGGATTAAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTAAGGTGGCCAGCCTCAAGGTCAAGAGTGTTAGGATTAAAAGCA  250

seq1  AGTGCTATTACACACTTTTTTTTTTAAAGATTTATTTTATGTATATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATTACACACTTTTTTTTTTAAAGATTTATTTTATGTATATGAGT  300

seq1  GCACTGTAGTTGTACAGATGGTTGTGAACCTTCGTTTGGTTGGGAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAGTTGTACAGATGGTTGTGAACCTTCGTTTGGTTGGGAATTGA  350

seq1  ATTTAGGACCTCTGCTTGCTCTGGTCAACCATGCTTGCTCAGGTCGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACCTCTGCTTGCTCTGGTCAACCATGCTTGCTCAGGTCGGCCC  400

seq1  TGCTCCCTCTGGTCCAAAGATTTATTTATTATTATAAATGAGTACACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTCTGGTCCAAAGATTTATTTATTATTATAAATGAGTACACTTG  450

seq1  CTGTCTTCAGACACACCGGAGGGCGCCAGATTTCATTATGGGAGGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAGACACACCGGAGGGCGCCAGATTTCATTATGGGAGGTTGTG  500

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATTCAGAAGAACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATTCAGAAGAACAGTC  550

seq1  AGTGCTCTTACCCACTGAGCCATCTCGCCAGCCGACTATTACATTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTACCCACTGAGCCATCTCGCCAGCCGACTATTACATTTTTAA  600

seq1  TATTTATTTAGGATGTTAGAGACACATGCTTGTTCTAGAATTCCCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAGGATGTTAGAGACACATGCTTGTTCTAGAATTCCCTGTGT  650

seq1  AGACCAGAACAGACTTGAATTCACAGATTCACCTGCTCTGCCTTCTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAACAGACTTGAATTCACAGATTCACCTGCTCTGCCTTCTGAGT  700

seq1  GCAGGATTAAAATTGTATACCACCACAGCTAGCAATATCTTTTAGATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTAAAATTGTATACCACCACAGCTAGCAATATCTTTTAGATTTT  750

seq1  TTTAAGATCTGTTTTGTTTTTGTTTCCGTTTGTTTGTTTGAGACAGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATCTGTTTTGTTTTTGTTTCCGTTTGTTTGTTTGAGACAGGGTG  800

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGCTGG  850

seq1  CCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAA  900

seq1  AGGCGTGTGCCACCACTGCCC-GGCAAG-ATCTGTTTCTACTTTACATTT  948
      ||||||||||||||||||||| |||||| ||||| |||||||||||||||
seq2  AGGCGTGTGCCACCACTGCCCGGGCAAGAATCTG-TTCTACTTTACATTT  949

seq1  GCACCATGAATGTGACTCGTGCTTGCAGAAGCTATAAGAAGGCACTGAAT  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACCATGAATGTGACTCGTGCTTGCAGAAGCTATAAGAA-GCACTGAAT  998

seq1  CCCCCAAAATTTGAGTTACAG-ATGGTT-ATAAGCAT--CTGTATGGATC  1044
      ||||||||| ||||||||||| |||||| ||||||||   ||||| ||| 
seq2  CCCCCAAAA-TTGAGTTACAGAATGGTTAATAAGCATTCTTGTAT-GAT-  1045

seq1  CTCTGCCAAAGCCGCAAGCACCTTTAA-TTGCTAAGTCTT  1083
      ||||||  ||| ||||||||||||||| ||||||||||||
seq2  CTCTGC--AAG-CGCAAGCACCTTTAATTTGCTAAGTCTT  1082


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