BAC Information

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BAC

Clone NameB6Ng01-242A10
Chromosome4 (Build37)1 (Build37)
Map Location 11,203,526 - 11,204,694130,366,771 - 130,366,937
singlet/doubletsingletsinglet
Overlap geneDpy19l4
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
Downstream geneRbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A10.bB6Ng01-242A10.g
ACCGA051786GA051787
length1,162947
definitionB6Ng01-242A10.b B6Ng01-242A10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,203,526 - 11,204,694)(130,366,771 - 130,366,937)
sequence
gaattccatagaacctgagttgagaagaaacggactcaggactacttttc
acgaacacgtcaataccttggatttcctgaatcaagttctagcccatgtg
aactcagacccattgctacaaactcagattaattacctagactttcatgg
ctatggttgtttctaaccaagagctaacatgcttttcctggcaatacagc
cttttctgagtccctgaattatccaccttcacttctgagtaagtaaaggg
tgtctggagtccacattgctgctgtgtggaagaaagggtctccaactgcc
actctcagacttaccaaggttgtttcaactttaagatgagtttacttata
aaattagaattacaaattaatgattcctgagtttacaaagaacaattcat
tcattattatccccgaagtcatgagacagcatgcaaagactagttaatga
cagttaacaatagtcttgagcaatttggtccttactttatccaggtcata
agttccactgtatctggatcatagaattcctgtagttctgttaattctgt
aattaatcgtggaaaaaactaaaacacaaaacaaaacacccagaggtgta
agtaactggaaagctgaaaactgtttcaaagtattccaaaagaccacctt
gaagcatgctgacatgtcaacattgccacattgctgttctcttcactgac
ctggtcatcttttcaaccggaataattataattttatagttactcactgc
ttagatggagtaactaatgttattatcaaacaacaatataacactataac
atcggttttagtgttcatgtatagacatagtaaatttaaaaattccagga
caaatattttgcaggttgattggcaattagtttcctgctatattatgtta
agccaaaaaatatttcatttcacagatattaaaattgggagttaccaaaa
tatatttaaatattaagacctacttattcaagttttgtcaattatggtaa
gaacttacatagcattagactgaagaaaactgcattagattacatctaaa
ctgtttagctgatgtgatagaatacttgtatagtcagcacttgagatgct
tgagcttaagagattactaaattcaagggtcagcctgggcttacatattg
gaaccttgtctc
gaattctttactaatgacacacatgtattagtccaccttacattgcacag
ttgagctccatttgtcgggactccgtagagagaaatgcaccaaaaagctt
ctgcaggtatactgcagcttcttgccacttctacagactcaggccgattg
gcagagcaaggtcagcggagacagactcacgtggagttttgctaagtcag
actcatgtgttaaggcaagacccatggaagacatgtcatgtttggaggga
gtgtaaggctctgctgattgagagagggacttactcttacagctagctct
gtaatgactgttggtcttgagtcttcactgatcttagcgtcactgagtga
ggcacagccaagaacttctggagttcctgttggttctggttcctcctgct
gacttgtggtgatttggatgaggtctggctgttcctgctaggttatggca
cagctgctgctatcctgactctacagaattggactggtgatatatccatg
aagtgtttgtgagaagatcaagctgctgccgcctatgaactgtactgctg
atttcctgacaacaaacaacgggagttgctccaaagaatgatttctaaat
aggtccacatcccctgtatcctttcttttccactgactctggcaagtggt
gggctagaagagaggttaaagcaatcaagagcaatcactaaaagtaggat
tttaaaaattaaagttacactgggcatggtggtgcacgcctttagtccca
gcacttgggaggcagaggcagcagatttctgaatttgaggtcaacctggt
cagagtgcattccaggacagccagggctatacagagaaaaactgtctcaa
aaaaaaaaaaaaaattaaggttacactgacattcatagtgctctgagtcc
atcccaagactgctcataccagaaaaaataaaaaaaaacccattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11203526_11204694
seq2: B6Ng01-242A10.b_48_1209

seq1  GAATTCCATAGAACCTGAGTTGAGAAGAAACGGACTCAGGACTACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAACCTGAGTTGAGAAGAAACGGACTCAGGACTACTTTTC  50

seq1  ACGAACACGTCAATACCTTGGATTTCCTGAATCAAGTTCTAGCCCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACACGTCAATACCTTGGATTTCCTGAATCAAGTTCTAGCCCATGTG  100

seq1  AACTCAGACCCATTGCTACAAACTCAGATTAATTACCTAGACTTTCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGACCCATTGCTACAAACTCAGATTAATTACCTAGACTTTCATGG  150

seq1  CTATGGTTGTTTCTAACCAAGAGCTAACATGCTTTTCCTGGCAATACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTGTTTCTAACCAAGAGCTAACATGCTTTTCCTGGCAATACAGC  200

seq1  CTTTTCTGAGTCCCTGAATTATCCACCTTCACTTCTGAGTAAGTAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGAGTCCCTGAATTATCCACCTTCACTTCTGAGTAAGTAAAGGG  250

seq1  TGTCTGGAGTCCACATTGCTGCTGTGTGGAAGAAAGGGTCTCCAACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAGTCCACATTGCTGCTGTGTGGAAGAAAGGGTCTCCAACTGCC  300

seq1  ACTCTCAGACTTACCAAGGTTGTTTCAACTTTAAGATGAGTTTACTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGACTTACCAAGGTTGTTTCAACTTTAAGATGAGTTTACTTATA  350

seq1  AAATTAGAATTACAAATTAATGATTCCTGAGTTTACAAAGAACAATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAATTACAAATTAATGATTCCTGAGTTTACAAAGAACAATTCAT  400

seq1  TCATTATTATCCCCGAAGTCATGAGACAGCATGCAAAGACTAGTTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTATCCCCGAAGTCATGAGACAGCATGCAAAGACTAGTTAATGA  450

seq1  CAGTTAACAATAGTCTTGAGCAATTTGGTCCTTACTTTATCCAGGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACAATAGTCTTGAGCAATTTGGTCCTTACTTTATCCAGGTCATA  500

seq1  AGTTCCACTGTATCTGGATCATAGAATTCCTGTAGTTCTGTTAATTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACTGTATCTGGATCATAGAATTCCTGTAGTTCTGTTAATTCTGT  550

seq1  AATTAATCGTGGAAAAAACTAAAACACAAAACAAAACACCCAGAGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCGTGGAAAAAACTAAAACACAAAACAAAACACCCAGAGGTGTA  600

seq1  AGTAACTGGAAAGCTGAAAACTGTTTCAAAGTATTCCAAAAGACCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGGAAAGCTGAAAACTGTTTCAAAGTATTCCAAAAGACCACCTT  650

seq1  GAAGCATGCTGACATGTCAACATTGCCACATTGCTGTTCTCTTCACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGCTGACATGTCAACATTGCCACATTGCTGTTCTCTTCACTGAC  700

seq1  CTGGTCATCTTTTCAACCGGAATAATTATAATTTTATAGTTACTCACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATCTTTTCAACCGGAATAATTATAATTTTATAGTTACTCACTGC  750

seq1  TTAGATGGAGTAACTAATGTTATTATCAAACAACAATATAACACTATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGAGTAACTAATGTTATTATCAAACAACAATATAACACTATAAC  800

seq1  ATCGGTTTTAGTGTTCATGTATAGACATAGTAAATTTAAAAATTCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTTTTAGTGTTCATGTATAGACATAGTAAATTTAAAAATTCCAGGA  850

seq1  CAAATATTTTGCAGGTTGATTGGCAATTAGTTTCCTGCTATATTATGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTTGCAGGTTGATTGGCAATTAGTTTCCTGCTATATTATGTTA  900

seq1  AGCCAAAAAATTATTTCATTTCACAGATATTAAAATT-GGAGTTACCAAA  949
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AGCCAAAAAA-TATTTCATTTCACAGATATTAAAATTGGGAGTTACCAAA  949

seq1  ATATATTTAAATATTAAGACCTACTTATTCAAGTTTTGTCAATTATGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAAATATTAAGACCTACTTATTCAAGTTTTGTCAATTATGGTA  999

seq1  AGAACTTACAATAGCATTAGACTGAAGAAAACTGCATTAGATTACATCCT  1049
      ||||||||| ||||||||||||||||||||||||||||||||||||||  
seq2  AGAACTTAC-ATAGCATTAGACTGAAGAAAACTGCATTAGATTACATC--  1046

seq1  AAAACTGTTTTAGGCTGGATGTGATAGAATACTTGTATAATTCCAGCACT  1099
       |||||||||   ||| |||||||||||||||||||||| |  |||||||
seq2  TAAACTGTTT--AGCT-GATGTGATAGAATACTTGTATAGT--CAGCACT  1091

seq1  TGAGATGC-TGAG-TTAAGAGGATTACCAAAAATTCAA-GGTCAGCCTGG  1146
      |||||||| |||| |||||| ||||||   |||||||| |||||||||||
seq2  TGAGATGCTTGAGCTTAAGA-GATTAC--TAAATTCAAGGGTCAGCCTGG  1138

seq1  GC-TACATAATGAGACCTTGTCTC  1169
      || |||||| ||  ||||||||||
seq2  GCTTACATATTGGAACCTTGTCTC  1162

seq1: chr1_130366771_130366937
seq2: B6Ng01-242A10.g_802_1008

seq1  ACGCCTTTAGTCCCAGACCTTGGGTGTCAGAGGCAGGTGAATCTTTGAGT  50
      ||||||||||||||||  |||||| | |||||||||  | || | ||| |
seq2  ACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGCAG-ATTTCTGAAT  49

seq1  TCGAGGCCAGCATGGCCTACAAAG--TTCCAGGATAGCCAGGGCTATACT  98
      | |||| || | ||| | | |  |  |||||||| |||||||||||||| 
seq2  TTGAGGTCAACCTGGTC-AGAGTGCATTCCAGGACAGCCAGGGCTATACA  98

seq1  AACAGACCTTGTCTCTAAAAACAAAAATA---------------GAAATG  133
       | | |   |||||| ||||| ||||| |               || || 
seq2  GAGAAAAACTGTCTCAAAAAAAAAAAAAAAATTAAGGTTACACTGACATT  148

seq1  CAAA------TAA-------ACAA-------------AGAAAAAATAAAA  157
      || |      | |        |||             ||||||||| |||
seq2  CATAGTGCTCTGAGTCCATCCCAAGACTGCTCATACCAGAAAAAAT-AAA  197

seq1  AAAAAACCCA  167
      ||||||||||
seq2  AAAAAACCCA  207