BAC Information

Click to search

BAC

Clone NameB6Ng01-242C17
Chromosome1 (Build37)
Map Location 19,443,674 - 19,555,173
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242C17.bB6Ng01-242C17.g
ACCGA051884GA051885
length1,0571,128
definitionB6Ng01-242C17.b B6Ng01-242C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,554,113 - 19,555,173)(19,443,674 - 19,444,807)
sequence
gaattcatttctcttatcagaggatggatttctcagaggccgaatatgtt
taaatccctaaagtttaacagagtaaaaacagcacacacgttctactgaa
tgaatatatattgaataaaaaaaatgaatacatgtcattgtttagggcat
ctctttacatgggaaacagaaaatagccttaaagaagcatcagtcagatg
aaatgttcccagacaacagccctgatgttcctcaaaggattgcaagagct
ttcagagatcctgtctgttaagtactgcaggagggagtgaatgtgggtgc
agccgttgacacacagtcgtatgctccataccctcttgatctcctgaagg
aagagacaaagctgctttgccagcagccccagcctcagctgcagacactg
ctagtttcaggtgagcgactcttgagttgccgcatcagggtttctgccta
tggcaatttcactaatccttctgaaacctacttatatattcatcctatac
catgtttcgggagttgatattattcaatttgcttaaaaggcaaatgtatg
caggttgttatggctagattttttttgatcaatacatttaacagatttcc
cccaaataaaaatagtttgtatttgacttgagttactaatacaggccaat
gaattattttgtcataatagtgatatgttaaaacacaccactattgtcgt
cacttcagcaacaaaatgctgttttagcattatagattaggatggatatt
atttcagaaagaaggaaagactcttctcatctaacatactgtcatctggc
tgttcatattagaataactttattattatcaacaccgtatccccacagag
gggctcatggagaccaaatctattacattataatgaagaggtaagtcgca
gtgacactttcagtgatttccaaatccactgagtccctgtgttgatataa
gagccatttgaagcagtactagaaaagttaaaatctcaaagatcagatcc
ttgccctcctggagtttatcaagaacatgagggagctgccatattttaaa
agcgatt

gaattctaaccttggaaattattcccattattcctggggaattatactgg
gtgactcattctccacatctataatgattgggagtaggggataatgagtt
tttatctccaaactctttggaaaaacaatattatatttcttatatttgaa
aataatgtgtacatcatgtttaatataaccacaattctatgatcccgtat
tcaaagcaacaaaaactatcccaaaactctttctaaagtctttggctaaa
atgaaagagggtcaggtagtccttagaggaaagttagactgggaggtgat
ttgggcagcccagttaccacatttcaccacagctataacgtaagctaaag
atttacaatacaggtagaagccagactaaccatcaggggaacagttgtgg
tactagaataccattcatttcaagaatctctgtatggtattttaatggct
agccattgtcagttagctaccaggagcttgtttgtcttccgtacagaggg
tctacagtaaaggtgctaatagactagaattaggagtaggtggaatcgcc
ctatgtgttctggttagatgttggggaaggtaagcattaagctttcaaag
tcagaaacaaagcgaggtctttatggctccccgaattttctattgtatct
tattgcaaaaccataattatctggtagcttgtcaggagattgatgttgaa
tcaaaacatattgattgtggctattccattaaatgagtaccacagtctct
ttactctggttctggaaataaagcaataaagaagaaaacagaaatgtctg
taaatgatggaaaaagggagggggaggagtgaaatttattatttgttgaa
tgcttattctctgttaaacggtgagttgatgtttacaaataaccaatggc
agaagctaggatttcatttcctctgcaggattggcaaacattttttttta
tattctgatactttgagacaggaatggagatacaaaattgatgctgcaat
tagaacatgcctttattatatgagaaggaatgtctatgaaggaagctatg
tggctttagatgcgtttaaaacctatttgcagccaagagtaaacgcataa
taagataacaggtaagtttctgtgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19554113_19555173
seq2: B6Ng01-242C17.b_45_1101 (reverse)

seq1  AATCGCTTTTTACATATGGCAGCTCCCTCATGTTCTTGATAAACTCCAGG  50
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  AATCGCTTTTAAAATATGGCAGCTCCCTCATGTTCTTGATAAACTCCAGG  50

seq1  AGGGCAAGGATCCTGATCTTTTGAGATTTTAACTTTTCTAGTACTGCTTC  100
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AGGGCAAGGAT-CTGATC-TTTGAGATTTTAACTTTTCTAGTACTGCTTC  98

seq1  AAATGGCTCCTTATATCAACACAGGGACTCAGTGGATTTGGAAATCACTG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCT-CTTATATCAACACAGGGACTCAGTGGATTTGGAAATCACTG  147

seq1  AAAGTGTCACCTGCGACTTACCTCTTCATTATAATGTAATAGATTTGGTC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCA-CTGCGACTTACCTCTTCATTATAATGTAATAGATTTGGTC  196

seq1  TCCATGAGCCCCTCTGTGGGGATACGGTGTTGATAATAATAAAGTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCCCCTCTGTGGGGATACGGTGTTGATAATAATAAAGTTATTC  246

seq1  TAATATGAACAGCCAGATGACAGTATGTTAGATGAGAAGAGTCTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAACAGCCAGATGACAGTATGTTAGATGAGAAGAGTCTTTCCTT  296

seq1  CTTTCTGAAATAATATCCATCCTAATCTATAATGCTAAAACAGCATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAATAATATCCATCCTAATCTATAATGCTAAAACAGCATTTTG  346

seq1  TTGCTGAAGTGACGACAATAGTGGTGTGTTTTAACATATCACTATTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGTGACGACAATAGTGGTGTGTTTTAACATATCACTATTATGA  396

seq1  CAAAATAATTCATTGGCCTGTATTAGTAACTCAAGTCAAATACAAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTCATTGGCCTGTATTAGTAACTCAAGTCAAATACAAACTAT  446

seq1  TTTTATTTGGGGGAAATCTGTTAAATGTATTGATCAAAAAAAATCTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGGGGGAAATCTGTTAAATGTATTGATCAAAAAAAATCTAGCC  496

seq1  ATAACAACCTGCATACATTTGCCTTTTAAGCAAATTGAATAATATCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACCTGCATACATTTGCCTTTTAAGCAAATTGAATAATATCAACT  546

seq1  CCCGAAACATGGTATAGGATGAATATATAAGTAGGTTTCAGAAGGATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAACATGGTATAGGATGAATATATAAGTAGGTTTCAGAAGGATTAG  596

seq1  TGAAATTGCCATAGGCAGAAACCCTGATGCGGCAACTCAAGAGTCGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGCCATAGGCAGAAACCCTGATGCGGCAACTCAAGAGTCGCTCA  646

seq1  CCTGAAACTAGCAGTGTCTGCAGCTGAGGCTGGGGCTGCTGGCAAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTAGCAGTGTCTGCAGCTGAGGCTGGGGCTGCTGGCAAAGCAG  696

seq1  CTTTGTCTCTTCCTTCAGGAGATCAAGAGGGTATGGAGCATACGACTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTTCCTTCAGGAGATCAAGAGGGTATGGAGCATACGACTGTG  746

seq1  TGTCAACGGCTGCACCCACATTCACTCCCTCCTGCAGTACTTAACAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACGGCTGCACCCACATTCACTCCCTCCTGCAGTACTTAACAGACA  796

seq1  GGATCTCTGAAAGCTCTTGCAATCCTTTGAGGAACATCAGGGCTGTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGAAAGCTCTTGCAATCCTTTGAGGAACATCAGGGCTGTTGTC  846

seq1  TGGGAACATTTCATCTGACTGATGCTTCTTTAAGGCTATTTTCTGTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACATTTCATCTGACTGATGCTTCTTTAAGGCTATTTTCTGTTTCC  896

seq1  CATGTAAAGAGATGCCCTAAACAATGACATGTATTCATTTTTTTTATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAGAGATGCCCTAAACAATGACATGTATTCATTTTTTTTATTCA  946

seq1  ATATATATTCATTCAGTAGAACGTGTGTGCTGTTTTTACTCTGTTAAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCATTCAGTAGAACGTGTGTGCTGTTTTTACTCTGTTAAACT  996

seq1  TTAGGGATTTAAACATATTCGGCCTCTGAGAAATCCATCCTCTGATAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATTTAAACATATTCGGCCTCTGAGAAATCCATCCTCTGATAAGA  1046

seq1  GAAATGAATTC  1061
      |||||||||||
seq2  GAAATGAATTC  1057


seq1: chr1_19443674_19444807
seq2: B6Ng01-242C17.g_66_1193

seq1  GAATTCTAACCTTGGAAATTATTCCCATTATTCCTGGGGAATTATACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCTTGGAAATTATTCCCATTATTCCTGGGGAATTATACTGG  50

seq1  GTGACTCATTCTCCACATCTATAATGATTGGGAGTAGGGGATAATGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCATTCTCCACATCTATAATGATTGGGAGTAGGGGATAATGAGTT  100

seq1  TTTATCTCCAAACTCTTTGGAAAAACAATATTATATTTCTTATATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCAAACTCTTTGGAAAAACAATATTATATTTCTTATATTTGAA  150

seq1  AATAATGTGTACATCATGTTTAATATAACCACAATTCTATGATCCCGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTGTACATCATGTTTAATATAACCACAATTCTATGATCCCGTAT  200

seq1  TCAAAGCAACAAAAACTATCCCAAAACTCTTTCTAAAGTCTTTGGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAACAAAAACTATCCCAAAACTCTTTCTAAAGTCTTTGGCTAAA  250

seq1  ATGAAAGAGGGTCAGGTAGTCCTTAGAGGAAAGTTAGACTGGGAGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGGTCAGGTAGTCCTTAGAGGAAAGTTAGACTGGGAGGTGAT  300

seq1  TTGGGCAGCCCAGTTACCACATTTCACCACAGCTATAACGTAAGCTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGCCCAGTTACCACATTTCACCACAGCTATAACGTAAGCTAAAG  350

seq1  ATTTACAATACAGGTAGAAGCCAGACTAACCATCAGGGGAACAGTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATACAGGTAGAAGCCAGACTAACCATCAGGGGAACAGTTGTGG  400

seq1  TACTAGAATACCATTCATTTCAAGAATCTCTGTATGGTATTTTAATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAATACCATTCATTTCAAGAATCTCTGTATGGTATTTTAATGGCT  450

seq1  AGCCATTGTCAGTTAGCTACCAGGAGCTTGTTTGTCTTCCGTACAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGTCAGTTAGCTACCAGGAGCTTGTTTGTCTTCCGTACAGAGGG  500

seq1  TCTACAGTAAAGGTGCTAATAGACTAGAATTAGGAGTAGGTGGAATCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTAAAGGTGCTAATAGACTAGAATTAGGAGTAGGTGGAATCGCC  550

seq1  CTATGTGTTCTGGTTAGATGTTGGGGAAGGTAAGCATTAAGCTTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTTCTGGTTAGATGTTGGGGAAGGTAAGCATTAAGCTTTCAAAG  600

seq1  TCAGAAACAAAGCGAGGTCTTTATGGCTCCCCGAATTTTCTATTGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAAAGCGAGGTCTTTATGGCTCCCCGAATTTTCTATTGTATCT  650

seq1  TATTGCAAAACCATAATTATCTGGTAGCTTGTCAGGAGATTGATGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAAACCATAATTATCTGGTAGCTTGTCAGGAGATTGATGTTGAA  700

seq1  TCAAAACATATTGATTGTGGCTATTCCATTAAATGAGTACCACAGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATATTGATTGTGGCTATTCCATTAAATGAGTACCACAGTCTCT  750

seq1  TTACTCTGGTTCTGGAAATAAAGCAATAAAGAAGAAAACAGAAATGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGGTTCTGGAAATAAAGCAATAAAGAAGAAAACAGAAATGTCTG  800

seq1  TAAATGATGGAAAAAGGGA-GGGGAGGAGTGAAATTTATTATTTGTTGAA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAATGATGGAAAAAGGGAGGGGGAGGAGTGAAATTTATTATTTGTTGAA  850

seq1  TGCTTATTCTCTGTTAAACGGTGAGTTGATGTTTACAAATAACCAATGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTCTCTGTTAAACGGTGAGTTGATGTTTACAAATAACCAATGGC  900

seq1  AGAAGCTAGGATTTCA-TTCCTCTGCAAGGATTGGCAAACATTTTTTTTT  948
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AGAAGCTAGGATTTCATTTCCTCTGC-AGGATTGGCAAACATTTTTTTTT  949

seq1  ATATTCTTGATAACCTTTGAGACAGGAAATGGAGATACAAAATTGAATGC  998
      |||||| |||||  |||||||||||| |||||||||||||||||| ||||
seq2  ATATTC-TGATA--CTTTGAGACAGG-AATGGAGATACAAAATTG-ATGC  994

seq1  TGCAATTAGAACATGCC-TTATTATATGAGGAAAGGATGTTTATGGAGG-  1046
      ||||||||||||||||| ||||||||||| ||| | |||| |||| ||| 
seq2  TGCAATTAGAACATGCCTTTATTATATGA-GAAGGAATGTCTATGAAGGA  1043

seq1  AGCTAGTCGTGTTTTAGATGCGTTTAGAACACAATTGAGGCAAAAAGAAA  1096
      ||||| |   | |||||||||||||| |||  | |||  || || || ||
seq2  AGCTA-TGTGGCTTTAGATGCGTTTAAAACCTATTTGCAGCCAAGAGTAA  1092

seq1  AAGAAAAAAAGAAAAAAAAGTTAATTTTTCTGTGAAGA  1134
      | | | || | | | || || |||  ||||||||||||
seq2  ACGCATAATA-AGATAACAGGTAA-GTTTCTGTGAAGA  1128


| Home | SequenceCutter | Blast | Download |