BAC Information

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BAC

Clone NameB6Ng01-242E21
Chromosome1 (Build37)
Map Location 23,973,267 - 24,126,465
singlet/doubletdoublet
Overlap gene1110058L19Rik, 4921533L14Rik
Upstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
Downstream geneLOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E21.bB6Ng01-242E21.g
ACCGA051986GA051987
length9681,065
definitionB6Ng01-242E21.b B6Ng01-242E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,125,816 - 24,126,465)(23,973,267 - 23,974,330)
sequence
gaattctctaatatttccctcttcctatgactgatttctgacacaagaat
aggaatttaacacaatgtgctgtgtttaaattgaataattggatttactt
taatgagagtgtaatttatagatatttttataacaacaatagcaagcaga
tgggagggttggcttatttagcaaagtatttgcaagccaaagttctgatt
caatccctagaggccctgtaaaatgcttgtaattttagcactggagaggc
tgaaatcaggagactcccgtgggctcattggcccactggtctaccctgag
gggtgagctccaagcctttgagatcacaggtctcaaaacaagtggatgac
attcctgagaatgatacccaaggttgtactatggcttcaacacatgtgta
cataaatgcacatatacacaaaaatacacatgtgaggagcgagtgtggca
gcagtcctaagatggcgcccaggactgcagccaagtcttatgacttgcac
ctgacttcctcatacacctgaaaataagccacatccactgggtgaattgc
gcaggtgcaccatgatgcaagatcggaccatatgacgagtgatgattctg
gccaatggactgctgttacgtggactgggctgatggggcgtggttgagag
gatatataagggattgcaattgggagcgggttggttgttgttttttcctg
gagagattgatttctggagagagattcatgcctgatattgaaaggttcct
gaataaactgctttgagaagaacatagtgttgtcgctcttttctgctgat
tggaataggaggcgacatacatacaccacataccacacacatgccacatg
catacagcagcagcagtgtcatagtcatacacctactaattcgcctcata
gcttagaacataacctcttctccttaagaagaccacgctttttcttgcag
tttgccatgttacagcac

gaattccaacacagatctctacattcctgacagcagacagccctagttcc
agatgtcaagcagatgtgagaaacactcactaattacacaccagaagcct
gaagtaaaaatgatgcttttactagaaggtatgcacatggccagcctgct
ctagcctcctgcctcatcagagtctgaatattcatcacaccaagggcaag
cacaagagtaagagacaaacagcatccatgtaattaacagtggctgttaa
cgtctaagtcttctgtcatgggcatgcagtacacatgtctgcagacacta
gaagtatcatatttcttgtgatctgtctgatgtgggtcctgggaactgaa
ccggggtccttgggaagaagatccagtgtgctttacctggtcattcactt
tttttttttcctttgagacagggtttctctgtgtagccctggctgtcctg
taactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggtgtgcgccacaacgctggctct
ggtcattcacttttaaagcctggaagctatggctagaagatttgggacct
ttaaaattcaggaaaattttaattttgagctcaaaaagactcttctacta
gttagcaggatattcaggagtacctgcgaaataacctaaaaaaaaatata
tttttttaatctacaaaataatctataaaaaaaatcttagaaagggctgg
agagatgactcagtgattaagagcactgacagcagctcctgagttcaatt
cccggcaaccacagggtggctcacaaccatctgtaaaggaaatctgatgt
cctctctggtgtgtctggaaacagatacagtgtactcatataataaaata
aatctaaaacaaatctcggaaaatgattacattcttttgatgcaagtatg
aaaaaaatgagtatccagctgatatgtaaatgaaacaaatatgtgacaat
gtcaaaggaagaacagttcgaaggagaggcccttgggtctggcgaagatc
atatgcctcagtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24125816_24126465
seq2: B6Ng01-242E21.b_44_693 (reverse)

seq1  CTCTCAACCACGCCCCATCAGCCCAGTCCACGTAACAGCAGTCCATTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACCACGCCCCATCAGCCCAGTCCACGTAACAGCAGTCCATTGGC  50

seq1  CAGAATCATCACTCGTCATATGGTCCGATCTTGCATCATGGTGCACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATCACTCGTCATATGGTCCGATCTTGCATCATGGTGCACCTGC  100

seq1  GCAATTCACCCAGTGGATGTGGCTTATTTTCAGGTGTATGAGGAAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCACCCAGTGGATGTGGCTTATTTTCAGGTGTATGAGGAAGTCAG  150

seq1  GTGCAAGTCATAAGACTTGGCTGCAGTCCTGGGCGCCATCTTAGGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTCATAAGACTTGGCTGCAGTCCTGGGCGCCATCTTAGGACTGC  200

seq1  TGCCACACTCGCTCCTCACATGTGTATTTTTGTGTATATGTGCATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACTCGCTCCTCACATGTGTATTTTTGTGTATATGTGCATTTATG  250

seq1  TACACATGTGTTGAAGCCATAGTACAACCTTGGGTATCATTCTCAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTGTTGAAGCCATAGTACAACCTTGGGTATCATTCTCAGGAAT  300

seq1  GTCATCCACTTGTTTTGAGACCTGTGATCTCAAAGGCTTGGAGCTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCACTTGTTTTGAGACCTGTGATCTCAAAGGCTTGGAGCTCACCC  350

seq1  CTCAGGGTAGACCAGTGGGCCAATGAGCCCACGGGAGTCTCCTGATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTAGACCAGTGGGCCAATGAGCCCACGGGAGTCTCCTGATTTCA  400

seq1  GCCTCTCCAGTGCTAAAATTACAAGCATTTTACAGGGCCTCTAGGGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCCAGTGCTAAAATTACAAGCATTTTACAGGGCCTCTAGGGATTG  450

seq1  AATCAGAACTTTGGCTTGCAAATACTTTGCTAAATAAGCCAACCCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACTTTGGCTTGCAAATACTTTGCTAAATAAGCCAACCCTCCCA  500

seq1  TCTGCTTGCTATTGTTGTTATAAAAATATCTATAAATTACACTCTCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCTATTGTTGTTATAAAAATATCTATAAATTACACTCTCATTA  550

seq1  AAGTAAATCCAATTATTCAATTTAAACACAGCACATTGTGTTAAATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATCCAATTATTCAATTTAAACACAGCACATTGTGTTAAATTCCT  600

seq1  ATTCTTGTGTCAGAAATCAGTCATAGGAAGAGGGAAATATTAGAGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGTCAGAAATCAGTCATAGGAAGAGGGAAATATTAGAGAATTC  650


seq1: chr1_23973267_23974330
seq2: B6Ng01-242E21.g_64_1128

seq1  GAATTCCAACACAGATCTCTACATTCCTGACAGCAGACAGCCCTAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACAGATCTCTACATTCCTGACAGCAGACAGCCCTAGTTCC  50

seq1  AGATGTCAAGCAGATGTGAGAAACACTCACTAATTACACACCAGAAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAAGCAGATGTGAGAAACACTCACTAATTACACACCAGAAGCCT  100

seq1  GAAGTAAAAATGATGCTTTTACTAGAAGGTATGCACATGGCCAGCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAAATGATGCTTTTACTAGAAGGTATGCACATGGCCAGCCTGCT  150

seq1  CTAGCCTCCTGCCTCATCAGAGTCTGAATATTCATCACACCAAGGGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCCTGCCTCATCAGAGTCTGAATATTCATCACACCAAGGGCAAG  200

seq1  CACAAGAGTAAGAGACAAACAGCATCCATGTAATTAACAGTGGCTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTAAGAGACAAACAGCATCCATGTAATTAACAGTGGCTGTTAA  250

seq1  CGTCTAAGTCTTCTGTCATGGGCATGCAGTACACATGTCTGCAGACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAAGTCTTCTGTCATGGGCATGCAGTACACATGTCTGCAGACACTA  300

seq1  GAAGTATCATATTTCTTGTGATCTGTCTGATGTGGGTCCTGGGAACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCATATTTCTTGTGATCTGTCTGATGTGGGTCCTGGGAACTGAA  350

seq1  CCGGGGTCCTTGGGAAGAAGATCCAGTGTGCTTTACCTGGTCATTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGTCCTTGGGAAGAAGATCCAGTGTGCTTTACCTGGTCATTCACTT  400

seq1  TTTTTTTTTCCTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  450

seq1  TAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  500

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACAACGCTGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACAACGCTGGCTCT  550

seq1  GGTCATTCACTTTTAAAGCCTGGAAGCTATGGCTAGAAGATTTGGGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCACTTTTAAAGCCTGGAAGCTATGGCTAGAAGATTTGGGACCT  600

seq1  TTAAAATTCAGGAAAATTTTAATTTTGAGCTCAAAAAGACTCTTCTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCAGGAAAATTTTAATTTTGAGCTCAAAAAGACTCTTCTACTA  650

seq1  GTTAGCAGGATATTCAGGAGTACCTGCGAAATAACCTAAAAAAAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGGATATTCAGGAGTACCTGCGAAATAACCTAAAAAAAAATATA  700

seq1  TTTTTTTAATCTACAAAATAATCTATAAAAAAAATCTTAGAAAGGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATCTACAAAATAATCTATAAAAAAAATCTTAGAAAGGGCTGG  750

seq1  AGAGATGACTCAGTGATTAAGAGCACTGACAGCAGCTCCTGAGTTCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGACTCAGTGATTAAGAGCACTGACAGCAGCTCCTGAGTTCAATT  800

seq1  CCCGGCAACCACAGGGTGGCTCACAACCATCTGTAAAGG-AATCTGATGT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCGGCAACCACAGGGTGGCTCACAACCATCTGTAAAGGAAATCTGATGT  850

seq1  CCTCTCTGGTGTGTCTGGAAACAGATACAGTGTACTCATATAAATAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCTCTGGTGTGTCTGGAAACAGATACAGTGTACTCATAT-AATAAAAT  899

seq1  AAATCTAAAACAAATCTCGGAAAATGATTACATTCTTTTGATGCAAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAAACAAATCTCGGAAAATGATTACATTCTTTTGATGCAAGTAT  949

seq1  G-AAAAAATGAGTATCCAGCTGATAATGTAAATGAAACAAATATGTGGAC  998
      | |||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  GAAAAAAATGAGTATCCAGCTGAT-ATGTAAATGAAACAAATATGT-GAC  997

seq1  AATGTCAAAGG-AGAACAGTTTCGAGGAGAGGCCCTT-GGTCTGGCGAAG  1046
      ||||||||||| |||||||||   ||||||||||||| ||||||||||||
seq2  AATGTCAAAGGAAGAACAGTTCGAAGGAGAGGCCCTTGGGTCTGGCGAAG  1047

seq1  ATCATATGCCCCAGTACA  1064
      |||||||||| |||||||
seq2  ATCATATGCCTCAGTACA  1065


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