BAC Information

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BAC

Clone NameB6Ng01-242F09
Chromosome1 (Build37)14 (Build37)
Map Location 103,046,299 - 103,046,80583,116,932 - 83,118,069
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F09.bB6Ng01-242F09.g
ACCGA052010GA052011
length1,1021,130
definitionB6Ng01-242F09.b B6Ng01-242F09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,046,299 - 103,046,805)(83,116,932 - 83,118,069)
sequence
gaattctttagccagtcgtagacatgtgacctgttggattgttgttttac
ctgtaagtatgtgctatgtggtaagtggcctatctccttatcatatgtgt
taactttgacaagtggctgtattcttttgttgcagaacaatattgatatt
caggctacgtattaatgtgtgtgtatgacaggcagttggccagatattgg
ccatgtagcctgtttgcaacatatctatttcttcttaaagactctaaatc
ttttttgcatctgatgtttgaaaaacattatttatgttatccactctact
atgcaaatgctgtgggaattagtcatcagattttcactagtaatgaacaa
gaaatataactttcttctcctatatttttgtttcattgtagtatcttcta
acaatcaaatcaagaggagattgctgggttgtagtcattcaaatcaaatg
aactcattgtattctatagtggatcttcaaccatgaatcaaaatataagt
gatacagataccataatatacaaaggccagacaattattagagcagcaaa
attcaagagaagctgttgtgttctttttcagttgctgtttcttttttttt
tccattttttattaggtatttagctcatttacatttccaatgctatacca
aaagtcccccatatccacccacccccactcccctgcccacccactccccc
tttttggccctggtgttcccctgtactggggcatataaagtttgcaagtc
caatgggcctctctttccagtgatggccgactaggccatctttttgatat
atatgcagctagagtcaagagctccgggatactggtttagtttcataatg
ttgttccacctatagggttgcagatccctttagctccttgggctactttt
ctctagctccttccattggggagccctatgatccattccatttagctgga
ctgtgagcatccactttcttgtgtttgctaaggccccggcaataagttct
cacaggagaacagctacatctggggtccttttcaataaattcttgctagt
gtttgcaatgatgtcagcgttgaatgctgatattggggtggaatcctgga
ta

gaattctttgtataaaatttaacgcttttttgtatttgttatttagttgt
taatttttttttacaattgaggctttatctccctccctgtccaccctcca
actgttccgcatcccacacctcctccctcagctcaaagaggatgccccca
cccccaccccaccagacctctccactccctgtgaccccaagtctcttgag
ggtaaggtgcatcttctctgactgcgtacatctatctttgttcatttatg
tccaattttaatgtattttctaagaactgattggaagtagtcagttctac
acagtcggaatgaaggagagaaaattttctgagtaaaacacaacttaaaa
caaaagcgaggaaataaacaacaagcaaccaaagaacaagtttggaagat
ggtgacatggctgaattgtcatgagcactacctgatcttttttgttttgt
tttgttttttcttatttttacttttatttatttattttttattagatatt
ttctttatttacatttcaaatgttattcctttttctggtttcccctccta
aaaaaacatctatcccatccccctttcttgttggccacttgagtttttta
tcttaaccattctgactggtgttaagatggaatgtcagagttgttttggc
tgtaaaaattgatcttaatgccgagtcattagtctagccttcagatcaaa
acattttaatataaataaattgtcataaatttactaatataaaattttat
ggcaaaggaatctcccttaaaattataaaactatatattttagttataaa
atatttttcaaatgtctagtaaatgtgatatacatagtcattcctatact
taaatttttttatattcattgcattttcttactacttaagtttgttctgt
taaataaattcattttaaaggtacagtctatgatataagttaaatttaaa
atatgacatttgcaaaggtaaatgtgaggtttcaagtttcctacattata
aattaatcttatattcatattttaacaaggttaattaaataatagataca
taggtaattttaaagtcctaaatatacagcatggagtttgggaagcaagc
atagaatagatcaattacaataaacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103046299_103046805
seq2: B6Ng01-242F09.b_614_1145 (reverse)

seq1  TATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA  50
      ||||||||  |||||||||  |||||||| | |||||||||| |||||||
seq2  TATCCAGGATTCCACCCCAATATCAGCATTC-AACGCTGACATCATTGCA  49

seq1  TACACTAGCAAGATTTTATTG-AAAGGA-CCCAGATGTAGCTG-TCTCTT  97
       |||||||||||| ||||||| |||||| |||||||||||||| |||| |
seq2  AACACTAGCAAGAATTTATTGAAAAGGACCCCAGATGTAGCTGTTCTCCT  99

seq1  GTGAG-ACT--ATGCCGGGGCC-TAGCAAACACA--GAAGTGGATGCTCA  141
      ||||| |||   |||||||||| |||||||||||   |||||||||||||
seq2  GTGAGAACTTATTGCCGGGGCCTTAGCAAACACAAGAAAGTGGATGCTCA  149

seq1  CAGT-CAGCT-AATGG-ATGGATCATAGGGCT-CCCAATGG-AGGAGCTA  186
      |||| ||||| ||||| ||||||||||||||| |||||||| ||||||||
seq2  CAGTCCAGCTAAATGGAATGGATCATAGGGCTCCCCAATGGAAGGAGCTA  199

seq1  GAG-AAAGTAG-CCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  234
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTAGCCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  249

seq1  CAACATTATG-AACT-AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCA  282
      |||||||||| |||| |||||||| |||||||||||||||||||||||||
seq2  CAACATTATGAAACTAAACCAGTATCCCGGAGCTCTTGACTCTAGCTGCA  299

seq1  TATATATC-AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCTCA  331
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TATATATCAAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  349

seq1  TTGGACTTGCAAACTTTATATGCCCCGGTACAGGGGAACACCAGGGCCAA  381
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAA  399

seq1  AAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGAC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGAC  449

seq1  TTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAAT  481
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAT  499

seq1  GGAAAAAAAAAGAAAAAA-------AAAAAGAA  507
      |||||||||||  ||| |       ||||||||
seq2  GGAAAAAAAAAAGAAACAGCAACTGAAAAAGAA  532


seq1: chr14_83116932_83118069
seq2: B6Ng01-242F09.g_67_1196

seq1  GAATTCTTTGTATAAAATTTAACGCTTTTTTGTATTTGTTATTTAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATAAAATTTAACGCTTTTTTGTATTTGTTATTTAGTTGT  50

seq1  TAATTTTTTTTTACAATTGAGGCTTTATCTCCCTCCCTGTCCACCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTTACAATTGAGGCTTTATCTCCCTCCCTGTCCACCCTCCA  100

seq1  ACTGTTCCGCATCCCACACCTCCTCCCTCAGCTCAAAGAGGATGCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCGCATCCCACACCTCCTCCCTCAGCTCAAAGAGGATGCCCCCA  150

seq1  CCCCCACCCCACCAGACCTCTCCACTCCCTGTGACCCCAAGTCTCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCACCAGACCTCTCCACTCCCTGTGACCCCAAGTCTCTTGAG  200

seq1  GGTAAGGTGCATCTTCTCTGACTGCGTACATCTATCTTTGTTCATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTGCATCTTCTCTGACTGCGTACATCTATCTTTGTTCATTTATG  250

seq1  TCCAATTTTAATGTATTTTCTAAGAACTGATTGGAAGTAGTCAGTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTAATGTATTTTCTAAGAACTGATTGGAAGTAGTCAGTTCTAC  300

seq1  ACAGTCGGAATGAAGGAGAGAAAATTTTCTGAGTAAAACACAACTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCGGAATGAAGGAGAGAAAATTTTCTGAGTAAAACACAACTTAAAA  350

seq1  CAAAAGCGAGGAAATAAACAACAAGCAACCAAAGAACAAGTTTGGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCGAGGAAATAAACAACAAGCAACCAAAGAACAAGTTTGGAAGAT  400

seq1  GGTGACATGGCTGAATTGTCATGAGCACTACCTGATCTTTTTTGTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGGCTGAATTGTCATGAGCACTACCTGATCTTTTTTGTTTTGT  450

seq1  TTTGTTTTTTCTTATTTTTACTTTTATTTATTTATTTTTTATTAGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCTTATTTTTACTTTTATTTATTTATTTTTTATTAGATATT  500

seq1  TTCTTTATTTACATTTCAAATGTTATTCCTTTTTCTGGTTTCCCCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTACATTTCAAATGTTATTCCTTTTTCTGGTTTCCCCTCCTA  550

seq1  AAAAAACATCTATCCCATCCCCCTTTCTTGTTGGCCACTTGAGTTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACATCTATCCCATCCCCCTTTCTTGTTGGCCACTTGAGTTTTTTA  600

seq1  TCTTAACCATTCTGACTGGTGTTAAGATGGAATGTCAGAGTTGTTTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCATTCTGACTGGTGTTAAGATGGAATGTCAGAGTTGTTTTGGC  650

seq1  TGTAAAAATTGATCTTAATGCCGAGTCATTAGTCTAGCCTTCAGATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAATTGATCTTAATGCCGAGTCATTAGTCTAGCCTTCAGATCAAA  700

seq1  ACATTTTAATATAAATAAATTGTCATAAATTTACTAATATAAAATTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATATAAATAAATTGTCATAAATTTACTAATATAAAATTTTAT  750

seq1  GGCAAAGGAATCTCCCTTAAAATTATAAAACTATATATTTTAGTTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGAATCTCCCTTAAAATTATAAAACTATATATTTTAGTTATAAA  800

seq1  ATATTTTTCAAATGTCTAGTAAATGTGATATACATAGTCATTCCTATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCAAATGTCTAGTAAATGTGATATACATAGTCATTCCTATACT  850

seq1  TAAATTTTTTTATATTCATTGCATTTTCTTACTACTTAAGTTTGTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTTATATTCATTGCATTTTCTTACTACTTAAGTTTGTTCTGT  900

seq1  TAAATAAATTCATTTT-AAGGTACAGTCTATGATATAAGTTAAATTTTAA  949
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TAAATAAATTCATTTTAAAGGTACAGTCTATGATATAAGTTAAA-TTTAA  949

seq1  AATATGACATTTGCAAAGGTAAATGTGAGGTTTCAAGTTTCCTACATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACATTTGCAAAGGTAAATGTGAGGTTTCAAGTTTCCTACATTAT  999

seq1  AAAATTAATCTTATATTCATATTTTAACAAAGGGTAATTAAAATAAAATA  1049
       ||||||||||||||||||||||||||| |||| |||||||   | ||||
seq2  -AAATTAATCTTATATTCATATTTTAAC-AAGGTTAATTAA---ATAATA  1044

seq1  GATAACAATAGTAATTTTAAAAGTCTAAATTAAAAACAGAAAAGAGTTTG  1099
      ||| |||   |||||||||||   ||||||   | |||| |  |||||||
seq2  GAT-ACATAGGTAATTTTAAAGTCCTAAAT---ATACAGCATGGAGTTTG  1090

seq1  GAAAGCAAGGCATAGAATAGTT--AATACAATAAACTTTTT  1138
      | |||||| ||||||||||| |  | |||||||||| ||||
seq2  GGAAGCAA-GCATAGAATAGATCAATTACAATAAACCTTTT  1130


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