BAC Information

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BAC

Clone NameB6Ng01-242K21
Chromosome1 (Build37)
Map Location 162,538,801 - 162,698,086
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K21.bB6Ng01-242K21.g
ACCGA052261GA052262
length1,2091,081
definitionB6Ng01-242K21.b B6Ng01-242K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,538,801 - 162,540,007)(162,697,042 - 162,698,086)
sequence
gaattcttctgacaccagtacaattaaagttctctctcaaggaagaggtg
tgcagagcctgacattctaactcgggaacagagctgttctgaacaactgc
tacttgtctttctatcactcagaaacaaaaatgcttgcatgtaaaaatgg
aataccatgtgcctattagaaacataactgatggattagctgtgggtcta
gataacaaacagtaaatatagggggagctagtaaacaatactaatacgca
gttttcggtttttctctttacttttctatttttgagattatattataaac
acatttctcccttcactgtgctcactccaaacccttccctagagccctct
ttgttctattacaaattcatagccattttttaagtacctgtcactattac
attttattggcagagagtacacatttgtaggtcaaagggcaactggcagg
actcagttctcgctttgaaccaggtaggatcatagtactgaactcaagtc
accaggcttgacagcaagtccctttacccactaagtcacctcactgtccc
aagaattccaacaaattcttatggtataaatagtacataaagttatatat
tgagtttgttataatgcctaatgtaaaataatctaaaaaatactagataa
agaatgtattagttaattcaaaagctagtttgtggaatacaacttaaaat
tttagaagtaaagcgaatcacaaccaaacatgacatttacagagaatctt
tctaaagaagctaaagacaatttcacagaagaattgcatcttcctaagtc
ccaaaccacactaaatggatttattagccccttggagttttcacttattt
atatttatttttctattcataggaaaaagaaagcagaacgtgaaaaatta
gtttgttataaaacaaaatcatattctgagtattcctgtacatataaaga
ttatgtaatcataaaaaattatatagaaaccattgaacaaattaaaaaga
tcgcctttctttctttttcttttttttttttttaatattgtatcagcctc
cacaaaggaccaggcctattggatttaaaaattgagtgttcaagattttt
ttctcaatctctttcctcccaggtcctttctccccctgttcttgtgtcat
cctccagttgcctgggttcagttcaagttacctccatccttccaaactat
gttcccctc
gaattctggaggttgaggccagagaatagtgagtttgaggcaagcctgga
aaacagataacaaaggaaagatgggccagtcttacgcgcgttcgcgaccg
gccaggaaagacgcaacaagccagaatcttctgcagcaaagctttattgc
ttactcaggagcaagagaggaagagcgcggaagagcgcggcagagagagg
cagagaggaagagagagagacgcagagagacgcagagagcagagagagag
agaggcagagagcagaggaaaagacgaagagaaagagacgaagaaagaag
agacgaagagggggagtgccagaaccccgtcccttttaaggagaattatc
ctccgcctaggacatgtcactccctgattggctgcagcccatcggcccag
ttgtcatcacgagaaaggcagagcacatggcgggaaaactgcccctgcac
atgtgcagattatttactacttagaacacagctgtcagcgccatcttgta
atggcaaatgtgaatgcggctccccacaggccagattgtaaacattaggt
tgtagcactggtagacattctagtttttgagagtaacgaaaccagatgac
attgatttaatctttttcatagtattcagaatattaaagcaagtagtttg
atgatttcatagtcatgtgctcaagaatagatttatgaggttggagtggt
gactcttccagggactcatgtttgatttctagtacccacaaagtggctta
caaccattgttaattcgagttcttgggaatctgacatccactgtcttcta
gcctccaagaatattgtatgcacgtggtgcacacacatacatgtaggtaa
aatatccatatttgcaaaaaataataaaataaaacattgaaaaataatat
atttataatgaaattttgcaaataaagattaaaattatgttactggcttt
attttaaatggccatatttattccttggttctattgatgttgaccgcagt
gtgaaatggtaatttctggattctttttacaacctccagttatgccaatg
tgattgtttttttctgcaagctgcctttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162538801_162540007
seq2: B6Ng01-242K21.b_45_1253

seq1  GAATTCTTCTGACACCAGTACAATTAAAGTTCTCTCTCAAGGAAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGACACCAGTACAATTAAAGTTCTCTCTCAAGGAAGAGGTG  50

seq1  TGCAGAGCCTGACATTCTAACTCGGGAACAGAGCTGTTCTGAACAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCTGACATTCTAACTCGGGAACAGAGCTGTTCTGAACAACTGC  100

seq1  TACTTGTCTTTCTATCACTCAGAAACAAAAATGCTTGCATGTAAAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTTTCTATCACTCAGAAACAAAAATGCTTGCATGTAAAAATGG  150

seq1  AATACCATGTGCCTATTAGAAACATAACTGATGGATTAGCTGTGGGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATGTGCCTATTAGAAACATAACTGATGGATTAGCTGTGGGTCTA  200

seq1  GATAACAAACAGTAAATATAGGGGGAGCTAGTAAACAATACTAATACGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAACAGTAAATATAGGGGGAGCTAGTAAACAATACTAATACGCA  250

seq1  GTTTTCGGTTTTTCTCTTTACTTTTCTATTTTTGAGATTATATTATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGGTTTTTCTCTTTACTTTTCTATTTTTGAGATTATATTATAAAC  300

seq1  ACATTTCTCCCTTCACTGTGCTCACTCCAAACCCTTCCCTAGAGCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCCCTTCACTGTGCTCACTCCAAACCCTTCCCTAGAGCCCTCT  350

seq1  TTGTTCTATTACAAATTCATAGCCATTTTTTAAGTACCTGTCACTATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTACAAATTCATAGCCATTTTTTAAGTACCTGTCACTATTAC  400

seq1  ATTTTATTGGCAGAGAGTACACATTTGTAGGTCAAAGGGCAACTGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGGCAGAGAGTACACATTTGTAGGTCAAAGGGCAACTGGCAGG  450

seq1  ACTCAGTTCTCGCTTTGAACCAGGTAGGATCATAGTACTGAACTCAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTCTCGCTTTGAACCAGGTAGGATCATAGTACTGAACTCAAGTC  500

seq1  ACCAGGCTTGACAGCAAGTCCCTTTACCCACTAAGTCACCTCACTGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTGACAGCAAGTCCCTTTACCCACTAAGTCACCTCACTGTCCC  550

seq1  AAGAATTCCAACAAATTCTTATGGTATAAATAGTACATAAAGTTATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCCAACAAATTCTTATGGTATAAATAGTACATAAAGTTATATAT  600

seq1  TGAGTTTGTTATAATGCCTAATGTAAAATAATCTAAAAAATACTAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGTTATAATGCCTAATGTAAAATAATCTAAAAAATACTAGATAA  650

seq1  AGAATGTATTAGTTAATTCAAAAGCTAGTTTGTGGAATACAACTTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATTAGTTAATTCAAAAGCTAGTTTGTGGAATACAACTTAAAAT  700

seq1  TTTAGAAGTAAAGCGAATCACAACCAAACATGACATTTACAGAGAATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTAAAGCGAATCACAACCAAACATGACATTTACAGAGAATCTT  750

seq1  TCTAAAGAAGCTAAAGACAATTTCACAGAAGAATTGCATCTTCCTAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAAGCTAAAGACAATTTCACAGAAGAATTGCATCTTCCTAAGTC  800

seq1  CCAAACCACACTAAATGGATTTATTAGCCCCTTGGAGTTTTCACTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACACTAAATGGATTTATTAGCCCCTTGGAGTTTTCACTTATTT  850

seq1  ATATTTATTTTTCTATTCATAGGAAAAAGAAAGCAGAACGTGAAAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTTTCTATTCATAGGAAAAAGAAAGCAGAACGTGAAAAATTA  900

seq1  GTTTGTTATAAAACAAAATCATATTCTGAGTATTCCTGTACATATAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTATAAAACAAAATCATATTCTGAGTATTCCTGTACATATAAAGA  950

seq1  TTATGTAATCAATAAAAAATTATAATAGAAACCATTGAACAAATTAAAAA  1000
      |||||||||| |||||||||||| ||||||||||||||||||||| ||||
seq2  TTATGTAATC-ATAAAAAATTAT-ATAGAAACCATTGAACAAATT-AAAA  997

seq1  AGATCGCCTTTCTTTCTTTTTC-TTTTTTTTTTTTTAATATTGTATCAGC  1049
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATCGCCTTTCTTTCTTTTTCTTTTTTTTTTTTTTAATATTGTATCAGC  1047

seq1  --TCACAAAGAACCAGG-CTATGGAATTTAAAAATTGAGTG-TCAAGATT  1095
         ||||||| |||||| |||| | |||||||||||||||| ||||||||
seq2  CTCCACAAAGGACCAGGCCTATTGGATTTAAAAATTGAGTGTTCAAGATT  1097

seq1  TTTCTC-CAATCTC-TTCCT-CCAGGTCC-TTCT-CCCCTG-TCTTGTGT  1139
      ||| || ||||||| ||||| |||||||| |||| |||||| ||||||||
seq2  TTTTTCTCAATCTCTTTCCTCCCAGGTCCTTTCTCCCCCTGTTCTTGTGT  1147

seq1  CATCCCTTCAGTTGCCTCGTCTCCATTTTCATGTCACCTCCCCATCCTTC  1189
      ||| ||| ||||||||| |  ||    |||| || ||||  |||||||||
seq2  CAT-CCTCCAGTTGCCTGGGTTC--AGTTCAAGTTACCT--CCATCCTTC  1192

seq1  TCAACACT-TGTTCCCCTC  1207
       ||| ||| ||||||||||
seq2  -CAA-ACTATGTTCCCCTC  1209

seq1: chr1_162697042_162698086
seq2: B6Ng01-242K21.g_94_1146 (reverse)

seq1  CACAAA-GCAGCTTCCAGAAAAA---CATCACA-TGGCATAACTG--AGT  43
      |||||| ||||||| ||||||||    |||||| |||||||||||   ||
seq2  CACAAAGGCAGCTTGCAGAAAAAAACAATCACATTGGCATAACTGGAGGT  50

seq1  TGTTAAAAGAACCCAGAAATTACCATTTCACACTGC-GTCAACATCAATA  92
      ||| ||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TGTAAAAAGAATCCAGAAATTACCATTTCACACTGCGGTCAACATCAATA  100

seq1  GAACCAA-GAATAAATATTGCCATTTTAAAATAAAGCCAGTAACATAATT  141
      ||||||| |||||||||| |||| ||||||||||||||||||||||||||
seq2  GAACCAAGGAATAAATATGGCCA-TTTAAAATAAAGCCAGTAACATAATT  149

seq1  TTAATCTTTATTTGCAAAATTTCATTATAAATATATTATTTTTCAATGTT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTATTTGCAAAATTTCATTATAAATATATTATTTTTCAATGTT  199

seq1  TTATTTTATTATTTTTTGCAAATATGGATATTTTACCTACATGTATGTGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTATTTTTTGCAAATATGGATATTTTACCTACATGTATGTGT  249

seq1  GTGCACCACGTGCATACAATATTCTTGGAGGCTAGAAGACAGTGGATGTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACGTGCATACAATATTCTTGGAGGCTAGAAGACAGTGGATGTC  299

seq1  AGATTCCCAAGAACTCGAATTAACAATGGTTGTAAGCCACTTTGTGGGTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCAAGAACTCGAATTAACAATGGTTGTAAGCCACTTTGTGGGTA  349

seq1  CTAGAAATCAAACATGAGTCCCTGGAAGAGTCACCACTCCAACCTCATAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATCAAACATGAGTCCCTGGAAGAGTCACCACTCCAACCTCATAA  399

seq1  ATCTATTCTTGAGCACATGACTATGAAATCATCAAACTACTTGCTTTAAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCTTGAGCACATGACTATGAAATCATCAAACTACTTGCTTTAAT  449

seq1  ATTCTGAATACTATGAAAAAGATTAAATCAATGTCATCTGGTTTCGTTAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATACTATGAAAAAGATTAAATCAATGTCATCTGGTTTCGTTAC  499

seq1  TCTCAAAAACTAGAATGTCTACCAGTGCTACAACCTAATGTTTACAATCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAACTAGAATGTCTACCAGTGCTACAACCTAATGTTTACAATCT  549

seq1  GGCCTGTGGGGAGCCGCATTCACATTTGCCATTACAAGATGGCGCTGACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGGGAGCCGCATTCACATTTGCCATTACAAGATGGCGCTGACA  599

seq1  GCTGTGTTCTAAGTAGTAAATAATCTGCACATGTGCAGGGGCAGTTTTCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCTAAGTAGTAAATAATCTGCACATGTGCAGGGGCAGTTTTCC  649

seq1  CGCCATGTGCTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATGTGCTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCA  699

seq1  GCCAATCAGGGAGTGACATGTCCTAGGCGGAGGATAATTCTCCTTAAAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCAGGGAGTGACATGTCCTAGGCGGAGGATAATTCTCCTTAAAAG  749

seq1  GGACGGGGTTCTGGCACTCCCCCTCTTCGTCTCTTCTTTCTTCGTCTCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGGTTCTGGCACTCCCCCTCTTCGTCTCTTCTTTCTTCGTCTCTT  799

seq1  TCTCTTCGTCTTTTCCTCTGCTCTCTGCCTCTCTCTCTCTCTGCTCTCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGTCTTTTCCTCTGCTCTCTGCCTCTCTCTCTCTCTGCTCTCTG  849

seq1  CGTCTCTCTGCGTCTCTCTCTCTTCCTCTCTGCCTCTCTCTGCCGCGCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCTGCGTCTCTCTCTCTTCCTCTCTGCCTCTCTCTGCCGCGCTC  899

seq1  TTCCGCGCTCTTCCTCTCTTGCTCCTGAGTAAGCAATAAAGCTTTGCTGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCGCTCTTCCTCTCTTGCTCCTGAGTAAGCAATAAAGCTTTGCTGC  949

seq1  AGAAGATTCTGGCTTGTTGCGTCTTTCCTGGCCGGTCGCGAACGCGCGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCTGGCTTGTTGCGTCTTTCCTGGCCGGTCGCGAACGCGCGTA  999

seq1  AGACTGGCCCATCTTTCCTTTGTTATCTGTTTTCCAGGCTTGCCTCAAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCCATCTTTCCTTTGTTATCTGTTTTCCAGGCTTGCCTCAAAC  1049

seq1  TCAC  1045
      ||||
seq2  TCAC  1053