BAC Information

Click to search

BAC

Clone NameB6Ng01-242O09
Chromosome1 (Build37)
Map Location 56,202,255 - 56,306,323
singlet/doubletdoublet
Overlap genenone
Upstream genePrei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242O09.bB6Ng01-242O09.g
ACCGA052423GA052424
length1,205177
definitionB6Ng01-242O09.b B6Ng01-242O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,202,255 - 56,203,462)(56,306,147 - 56,306,323)
sequence
gaattcaatgtaactttctgtgctcagagtcacaacatcgacttaccttg
aaaagatcaaacacctttagggagatttctgattgacaatgactataagg
gaaggatgtcttaaggactattctatgcaaacttaattcaatgagagagt
agtattttgatgaagagagatgatgatatatttatgctgtgttgctgtgt
ggctttctgtacatatatgatttttcttacatatgtgaggctatgcctct
gcagttagccaaatgccactcaggactcagaaagtatagaatatcaccta
tgtattttttcctcctctctcttagttctttttccttcattcaatagaat
ttccttttaattttttaaaaccatcctctaagaacaaaaggccttctata
taaaaaaggccagacagcagggttcatcacatatgtgaaatatgcctttt
ttacattggcaaacaatattttacaatagtttctaatctttcttttttgg
gggtattggaggaactaaagcatgccaaccattcttttcatgatacgtgc
ttaagaatgtttgtacgtgttcagaatgacgtgaacttcccttctgttca
ttaaagttttggttgaggggattgagcaaacggcttaagagcactagttg
ttcatcctgagtaatggggttcaatctccagcacccacatggtagctaac
aaccatctttaactctagtctgagaatatcccacagactcttctggcctc
catgggtactaaaggcatgtagcacacagatctataggcaggcaaacttc
tatacacataagtaggaaggaacacacagggaaacagagacagagaacga
gagcctgtgtgattcatttgctccattttatatctatttctgtcatcttt
tgccttggctttgactagaatattaaaggcagtcttgagatatctttatc
acattcttgtttcatgcattcatgaatgagtcaacagtttctgcattggt
cttggattcaaatctaccacacttttgagaataaagtttctttctcaagc
tctgctgtttacacatgttcagcacttgagtcttcctggggatgcgtcat
ggcacatgtaattatgggtaagacttgcttgctcggtgtgcttacatgcc
agtagtactcatgggaaatacaacgtgactaaatttgggttaactcaagt
tttat

ctctatgcaagaaagtagcctcaagtcctatagagaatagttcattaaaa
tcacgtttttcaatttctccctaagatggctggccactcagggagctatt
tcatagcaggagagttcttagagttgtgtgggtcttaatgggttattttg
attttgtttttttgggggggttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56202255_56203462
seq2: B6Ng01-242O09.b_47_1251

seq1  GAATTCAATGTAACTTTCTGTGCTCAGAGTCACAACATCGACTTACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAACTTTCTGTGCTCAGAGTCACAACATCGACTTACCTTG  50

seq1  AAAAGATCAAACACCTTTAGGGAGATTTCTGATTGACAATGACTATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCAAACACCTTTAGGGAGATTTCTGATTGACAATGACTATAAGG  100

seq1  GAAGGATGTCTTAAGGACTATTCTATGCAAACTTAATTCAATGAGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGTCTTAAGGACTATTCTATGCAAACTTAATTCAATGAGAGAGT  150

seq1  AGTATTTTGATGAAGAGAGATGATGATATATTTATGCTGTGTTGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGATGAAGAGAGATGATGATATATTTATGCTGTGTTGCTGTGT  200

seq1  GGCTTTCTGTACATATATGATTTTTCTTACATATGTGAGGCTATGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGTACATATATGATTTTTCTTACATATGTGAGGCTATGCCTCT  250

seq1  GCAGTTAGCCAAATGCCACTCAGGACTCAGAAAGTATAGAATATCACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGCCAAATGCCACTCAGGACTCAGAAAGTATAGAATATCACCTA  300

seq1  TGTATTTTTTCCTCCTCTCTCTTAGTTCTTTTTCCTTCATTCAATAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTTCCTCCTCTCTCTTAGTTCTTTTTCCTTCATTCAATAGAAT  350

seq1  TTCCTTTTAATTTTTTAAAACCATCCTCTAAGAACAAAAGGCCTTCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAATTTTTTAAAACCATCCTCTAAGAACAAAAGGCCTTCTATA  400

seq1  TAAAAAAGGCCAGACAGCAGGGTTCATCACATATGTGAAATATGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGCCAGACAGCAGGGTTCATCACATATGTGAAATATGCCTTTT  450

seq1  TTACATTGGCAAACAATATTTTACAATAGTTTCTAATCTTTCTTTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGGCAAACAATATTTTACAATAGTTTCTAATCTTTCTTTTTTGG  500

seq1  GGGTATTGGAGGAACTAAAGCATGCCAACCATTCTTTTCATGATACGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGGAGGAACTAAAGCATGCCAACCATTCTTTTCATGATACGTGC  550

seq1  TTAAGAATGTTTGTACGTGTTCAGAATGACGTGAACTTCCCTTCTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGTTTGTACGTGTTCAGAATGACGTGAACTTCCCTTCTGTTCA  600

seq1  TTAAAGTTTTGGTTGAGGGGATTGAGCAAACGGCTTAAGAGCACTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTTGGTTGAGGGGATTGAGCAAACGGCTTAAGAGCACTAGTTG  650

seq1  TTCATCCTGAGTAATGGGGTTCAATCTCCAGCACCCACATGGTAGCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGAGTAATGGGGTTCAATCTCCAGCACCCACATGGTAGCTAAC  700

seq1  AACCATCTTTAACTCTAGTCTGAGAATATCCCACAGACTCTTCTGGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTTTAACTCTAGTCTGAGAATATCCCACAGACTCTTCTGGCCTC  750

seq1  CATGGGTACTAAAGGCATGTAGCACACAGATCTATAGGCAGGCAAACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTACTAAAGGCATGTAGCACACAGATCTATAGGCAGGCAAACTTC  800

seq1  TATACACATAAGTAGGAAGGAACACACAGGGAAACAGAGACAGAGAACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATAAGTAGGAAGGAACACACAGGGAAACAGAGACAGAGAACGA  850

seq1  GAGCCTGTGTGATTCATTTGCTCCATTTTATATCTATTTCTGTCATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTGTGATTCATTTGCTCCATTTTATATCTATTTCTGTCATCTTT  900

seq1  TGCCTTGGCTTTGACTAGAATATTAAAGGCAGTCTTGAAGATATCTTTAT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCCTTGGCTTTGACTAGAATATTAAAGGCAGTCTTG-AGATATCTTTAT  949

seq1  CACATTCTTGTTTCATGCATTCATGAATGAGTCAACAGTTTCTGCATTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTGTTTCATGCATTCATGAATGAGTCAACAGTTTCTGCATTGG  999

seq1  TCCTTGGATTCAAATCTACCACACTTTTGAAGATATAGTTTCCTTTCTCC  1050
      | ||||||||||||||||||||||||||||  ||| ||||| |||||| |
seq2  T-CTTGGATTCAAATCTACCACACTTTTGAGAATAAAGTTT-CTTTCT-C  1046

seq1  AAGCTCTGCTGTTTACACATG-TCAGCACTTGAGTTCTCCTGGGAGTGCC  1099
      ||||||||||||||||||||| |||||||||||||  |||||||  || |
seq2  AAGCTCTGCTGTTTACACATGTTCAGCACTTGAGTCTTCCTGGGGATG-C  1095

seq1  GTCAT-GCACATGTTTAATTATGTGTATAGAACTTTGCTTGCTC-GTGTG  1147
      ||||| |||||||  |||||||| ||| |||   |||||||||| |||||
seq2  GTCATGGCACATG--TAATTATGGGTA-AGA--CTTGCTTGCTCGGTGTG  1140

seq1  C-TACATGCATGTAGTACTCAT-GGAGATACAAAGGGAACTAAAATTTGG  1195
      | |||||||  ||||||||||| ||| |||||| | | |||||| || ||
seq2  CTTACATGCCAGTAGTACTCATGGGAAATACAACGTG-ACTAAATTTGGG  1189

seq1  TTAA-TCAA--TTTAT  1208
      |||| ||||  |||||
seq2  TTAACTCAAGTTTTAT  1205


seq1: chr1_56306147_56306323
seq2: B6Ng01-242O09.g_75_251 (reverse)

seq1  CAAACAACCCCCCCAAAAAAACAAAATCAAAATAACCCATTAAGACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCCCCCCAAAAAAACAAAATCAAAATAACCCATTAAGACCCAC  50

seq1  ACAACTCTAAGAACTCTCCTGCTATGAAATAGCTCCCTGAGTGGCCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTAAGAACTCTCCTGCTATGAAATAGCTCCCTGAGTGGCCAGCC  100

seq1  ATCTTAGGGAGAAATTGAAAAACGTGATTTTAATGAACTATTCTCTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGGAGAAATTGAAAAACGTGATTTTAATGAACTATTCTCTATAG  150

seq1  GACTTGAGGCTACTTTCTTGCATAGAG  177
      |||||||||||||||||||||||||||
seq2  GACTTGAGGCTACTTTCTTGCATAGAG  177


| Home | SequenceCutter | Blast | Download |