BAC Information

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BAC

Clone NameB6Ng01-243F03
Chromosome1 (Build37)
Map Location 105,568,591 - 105,696,251
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243F03.bB6Ng01-243F03.g
ACCGA052738GA052739
length1,1461,049
definitionB6Ng01-243F03.b B6Ng01-243F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,568,591 - 105,569,514)(105,695,202 - 105,696,251)
sequence
gaattcagctgtgattccacattctctttttcctgtattacacggtgtac
agataccattctgtataggacttaaaggaggttaaaggaagttaaaccag
agtgcagaacagatggagtctgcagggtcccagtccagctcagggtgaat
gtggtaaggggaggaaaagaaaggccttctccaagaattttaatgaagta
actcttagactatattagcttgtgcatatatatctattttggatgagatt
gtaatcatttatttggagtggaaaggggctatataggaacttcggagagt
aagaagcaatttttagggtaatgaagtcattggcttgagtttaaagtact
gtatcttgatactactttatagtaccatatttgtatggagaggcattcca
gaactcttaagtacttcctgggctagatctatctggaaagagaagttgaa
cctgtgggtttaacgaggattctgtgacattcctcgggtggatgattggg
tgtcagtgtctcccagggcatgtagagaagagcaatccctactaagaaag
caagtccttcattttgggccaagttgagaggagctatttggatatggtag
actgccgtattaagtagtgtggtggaactcattttttcctacatgttgtt
ttggccattgtgctttctcacatcaaaagaaacactaagactaagacttt
gactgttttagaaatcttggtgtctatatatgagcgatcacttcaattta
catacagcaaaagttattttacaaaaataccttgtttccaaaggttctac
ttgcaagagtctcatggtacctggcttatgaaacatttctgtacaggata
tactacataagaagcttctaacatatgataaatatagtttgtaatattat
caaccttgttgtggctctttccctaaggcctttctctaacaaatatttca
tgctaagaatcttttattcattctatctttctttaggttttaaaaatcca
catggctcttaaatttttattgattgtatacctataggaaccaaatatat
agtatttataattacttgatgggctatggcaaattcctttccatttactt
tggaattcaggtcacctccagggagccttgggtgaatatctattga

gaattctatcagtgatacataatttgagaatggtaacagaatcatcaaca
tatataggtctgatatggttaaggcacagatttacttgtgcacttatggc
atatatgaaaattgtacaagaacttttttaatgtgcctgacaatctgtgg
tctaatcctgccatctactggacaaattaactaggtgcatggaaggttga
aggagggagagagagagagagacagagagacagagagacagagacagaga
cagagagacagagagagagagggagagacagagagagagacagagagaga
gagacagagagagagagagagagagagatattttatatgagtaaagttgt
aaaggattatttttaatcctatggggtgaagtcaatttaaggtaaaatgc
agctgaaattatgaaaaacaaaaaacaaaaacaaaaaacaaaaacaaaaa
acaaaaacaaaaaaacaaaaacaggcctgcttcctagcaactccacagat
atctaaaataatccttcatctgtcattaattaaggacaaatttaagattt
tgcttaatatgtctgagtctaagctagatagaatatacaatatgagttaa
tgctcacaagacaacactgcaagtataaattaatgttctcatttttcagc
tgagaaatcccaccattgctcaggagacatcactgaagaggaggcataaa
gaatgtaagtgctttgctctaaagagttgtctctaaagagtagtgagaag
tacttactgctctttcagaagacgcaatgttggctcccagccacagagtc
tggcagtttacaaactcttggattttagaagtaagagatattggatggtt
ctctgaccttagtgtgtacttgcactcatgtgcgtgttacacacagaaac
ataaatatgcatatacattaaaaaaattaataaatgaatctctgaaaaat
taaagagctatatattttttttacccttatgggaatgcagaggctgttgt
acacgaacattcacatcaactgtgttgacagtacaaaaatctacacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105568591_105569514
seq2: B6Ng01-243F03.b_246_1191

seq1  ACTCTTAGACTATATTAGCTTGTGCATATATATCTATTTTGGATGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGACTATATTAGCTTGTGCATATATATCTATTTTGGATGAGATT  50

seq1  GTAATCATTTATTTGGAGTGGAAAGGGGCTATATAGGAACTTCGGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATTTATTTGGAGTGGAAAGGGGCTATATAGGAACTTCGGAGAGT  100

seq1  AAGAAGCAATTTTTAGGGTAATGAAGTCATTGGCTTGAGTTTAAAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAATTTTTAGGGTAATGAAGTCATTGGCTTGAGTTTAAAGTACT  150

seq1  GTATCTTGATACTACTTTATAGTACCATATTTGTATGGAGAGGCATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGATACTACTTTATAGTACCATATTTGTATGGAGAGGCATTCCA  200

seq1  GAACTCTTAAGTACTTCCTGGGCTAGATCTATCTGGAAAGAGAAGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTAAGTACTTCCTGGGCTAGATCTATCTGGAAAGAGAAGTTGAA  250

seq1  CCTGTGGGTTTAACGAGGATTCTGTGACATTCCTCGGGTGGATGATTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGTTTAACGAGGATTCTGTGACATTCCTCGGGTGGATGATTGGG  300

seq1  TGTCAGTGTCTCCCAGGGCATGTAGAGAAGAGCAATCCCTACTAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGTCTCCCAGGGCATGTAGAGAAGAGCAATCCCTACTAAGAAAG  350

seq1  CAAGTCCTTCATTTTGGGCCAAGTTGAGAGGAGCTATTTGGATATGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTTCATTTTGGGCCAAGTTGAGAGGAGCTATTTGGATATGGTAG  400

seq1  ACTGCCGTATTAAGTAGTGTGGTGGAACTCATTTTTTCCTACATGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCGTATTAAGTAGTGTGGTGGAACTCATTTTTTCCTACATGTTGTT  450

seq1  TTGGCCATTGTGCTTTCTCACATCAAAAGAAACACTAAGACTAAGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATTGTGCTTTCTCACATCAAAAGAAACACTAAGACTAAGACTTT  500

seq1  GACTGTTTTAGAAATCTTGGTGTCTATATATGAGCGATCACTTCAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTAGAAATCTTGGTGTCTATATATGAGCGATCACTTCAATTTA  550

seq1  CATACAGCAAAAGTTATTTTACAAAAATACCTTG-TTCCAAAGGTTCTAC  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATACAGCAAAAGTTATTTTACAAAAATACCTTGTTTCCAAAGGTTCTAC  600

seq1  TTGCAAGAGTCTCATGGTACCTGGCTTATG-AACATTTCTGTACAGGATA  648
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGCAAGAGTCTCATGGTACCTGGCTTATGAAACATTTCTGTACAGGATA  650

seq1  TACTACATAAGAAGCTTCTAACATATGATAAATATAG-TTGTAATATTAT  697
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTACATAAGAAGCTTCTAACATATGATAAATATAGTTTGTAATATTAT  700

seq1  CAACCTTG-TGTGGCTCTTTCC--TAGGCCTTTCTCTAACAAATATTTCA  744
      |||||||| |||||||||||||   |||||||||||||||||||||||||
seq2  CAACCTTGTTGTGGCTCTTTCCCTAAGGCCTTTCTCTAACAAATATTTCA  750

seq1  TGCTAAGAATCTTT--ATCA-TCTATCTTTCTTTAGGTTTTAAAAAT-CA  790
      ||||||||||||||   ||| |||||||||||||||||||||||||| ||
seq2  TGCTAAGAATCTTTTATTCATTCTATCTTTCTTTAGGTTTTAAAAATCCA  800

seq1  CAT-GCTCTTAAATTTTTATTGA-TGTATAACTATAAGAA-CAAATATAT  837
      ||| ||||||||||||||||||| |||||| ||||| ||| |||||||||
seq2  CATGGCTCTTAAATTTTTATTGATTGTATACCTATAGGAACCAAATATAT  850

seq1  AGTA-TTATAATTAC-TGATGGCATAT-GCAA--TTCTTTCATTTTACTT  882
      |||| |||||||||| ||||||  ||| ||||  | |||||  |||||||
seq2  AGTATTTATAATTACTTGATGGGCTATGGCAAATTCCTTTCCATTTACTT  900

seq1  TTGAATCAGGGTCA-CTC--AGGAGCCTT-GGTGAATATCTATTGA  924
      | ||||   ||||| |||   |||||||| ||||||||||||||||
seq2  TGGAATTCAGGTCACCTCCAGGGAGCCTTGGGTGAATATCTATTGA  946


seq1: chr1_105695202_105696251
seq2: B6Ng01-243F03.g_67_1115 (reverse)

seq1  TTTGTGTAGA-TTTTGTACTGTCAAACACAGTTGATGTGAATGTTCGTGT  49
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTGTAGATTTTTGTACTGTC-AACACAGTTGATGTGAATGTTCGTGT  49

seq1  ACAACAGCCTCTGCATTCCCATAA-GGTAAAAAAAATATATAGCTCTTTA  98
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ACAACAGCCTCTGCATTCCCATAAGGGTAAAAAAAATATATAGCTCTTT-  98

seq1  AATTTTTCAGAGATTCATTTTATTAATTTTTTTAATGTATATGCATATTT  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTTTTCAGAGATTCA-TTTATTAATTTTTTTAATGTATATGCATATTT  147

seq1  ATGTTTCTGTGTGTAACACGCACATGAGTGCAAGTACACACTAAGGTCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTGTGTGTAACACGCACATGAGTGCAAGTACACACTAAGGTCAG  197

seq1  AGAACCATCCAATATCTCTTACTTCTAAAATCCAAGAGTTTGTAAACTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATCCAATATCTCTTACTTCTAAAATCCAAGAGTTTGTAAACTGC  247

seq1  CAGACTCTGTGGCTGGGAGCCAACATTGCGTCTTCTGAAAGAGCAGTAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGTGGCTGGGAGCCAACATTGCGTCTTCTGAAAGAGCAGTAAG  297

seq1  TACTTCTCACTACTCTTTAGAGACAACTCTTTAGAGCAAAGCACTTACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCACTACTCTTTAGAGACAACTCTTTAGAGCAAAGCACTTACAT  347

seq1  TCTTTATGCCTCCTCTTCAGTGATGTCTCCTGAGCAATGGTGGGATTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGCCTCCTCTTCAGTGATGTCTCCTGAGCAATGGTGGGATTTCT  397

seq1  CAGCTGAAAAATGAGAACATTAATTTATACTTGCAGTGTTGTCTTGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAAAATGAGAACATTAATTTATACTTGCAGTGTTGTCTTGTGAG  447

seq1  CATTAACTCATATTGTATATTCTATCTAGCTTAGACTCAGACATATTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTCATATTGTATATTCTATCTAGCTTAGACTCAGACATATTAAG  497

seq1  CAAAATCTTAAATTTGTCCTTAATTAATGACAGATGAAGGATTATTTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTTAAATTTGTCCTTAATTAATGACAGATGAAGGATTATTTTAG  547

seq1  ATATCTGTGGAGTTGCTAGGAAGCAGGCCTGTTTTTGTTTTTTTGTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGGAGTTGCTAGGAAGCAGGCCTGTTTTTGTTTTTTTGTTTTT  597

seq1  GTTTTTTGTTTTTGTTTTTTGTTTTTGTTTTTTGTTTTTCATAATTTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTGTTTTTTGTTTTTGTTTTTTGTTTTTCATAATTTCAG  647

seq1  CTGCATTTTACCTTAAATTGACTTCACCCCATAGGATTAAAAATAATCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTACCTTAAATTGACTTCACCCCATAGGATTAAAAATAATCCT  697

seq1  TTACAACTTTACTCATATAAAATATCTCTCTCTCTCTCTCTCTCTCTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTTACTCATATAAAATATCTCTCTCTCTCTCTCTCTCTCTGTC  747

seq1  TCTCTCTCTCTGTCTCTCTCTCTGTCTCTCCCTCTCTCTCTCTGTCTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTGTCTCTCTCTCTGTCTCTCCCTCTCTCTCTCTGTCTCTC  797

seq1  TGTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCCCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCCCTC  847

seq1  CTTCAACCTTCCATGCACCTAGTTAATTTGTCCAGTAGATGGCAGGATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCTTCCATGCACCTAGTTAATTTGTCCAGTAGATGGCAGGATTA  897

seq1  GACCACAGATTGTCAGGCACATTAAAAAAGTTCTTGTACAATTTTCATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGATTGTCAGGCACATTAAAAAAGTTCTTGTACAATTTTCATAT  947

seq1  ATGCCATAAGTGCACAAGTAAATCTGTGCCTTAACCATATCAGACCTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAAGTGCACAAGTAAATCTGTGCCTTAACCATATCAGACCTATA  997

seq1  TATGTTGATGATTCTGTTACCATTCTCAAATTATGTATCACTGATAGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGATGATTCTGTTACCATTCTCAAATTATGTATCACTGATAGAAT  1047

seq1  TC  1050
      ||
seq2  TC  1049


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