BAC Information

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BAC

Clone NameB6Ng01-243I02
Chromosome1 (Build37)
Map Location 150,678,288 - 150,797,456
singlet/doubletdoublet
Overlap geneLOC100042792
Upstream genenone
Downstream geneLOC435647, LOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I02.bB6Ng01-243I02.g
ACCGA052872GA052873
length1,1421,107
definitionB6Ng01-243I02.b B6Ng01-243I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,796,280 - 150,797,456)(150,678,288 - 150,679,400)
sequence
gaattctttttatttattgtctttagcatttagtgaagtaattatttcat
attaaaatcaatgaatgttcaagtaaaagcctatattttgacttatattt
aatgaggaaacattttaatataaaatctattatctatatccttttaaaat
atgcaaaatgaaatacacaatattttgcttatgattattgttataatatc
atatgttatttttaagacatcatttcttgctattcaaaaacattagtatc
tcatggatgtggatttatgtaaattatgactcacataagaagaatattgt
gctgagctatatgaattttgaaaagttaggtttttattcaaccctttaaa
ggcattgtacttattttgcattcaaatattatgttatatgttaaaggaca
taacataatgtcattggcaatgttcttcataattctttttaaaatgtgct
aaacgatattctatctgcatcattaggttaccatacaacaatgtcctttg
agaatatggttttgctatcatttctagttgtaattacttctcacaggaac
agtatgggcttattgaaacaacttgaggtgtgaaggttgagaagacaatg
cctgtgcttgctgtaaataaccacagcttgatggcatagcatgtttattt
cacagaagctcacccttccaaggtgccatatattttttaaacctctctga
atatgttctttctgtataaaagcttgcgttggatatatgctgtgcctcac
attttcttcatcatgacatttctgatgttatgggacagaaaatacttagc
accaggggtgcacagtccatggtaggagatttagaaacaatctcacactc
taatccagacctgaaaatagaaaggcatctccttcctctcatgcaattcc
agtcacccagtctttttttttctctcttctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctttggttctcggtagcc
tgatgtcctggaactctagtccagtttaatagagattactgctgtgacct
ctctccttatatctaaaggattcacacaccttttcctaacagcctgtctc
cacgtaaccccaattgcttggtctcaccccgaactccctcag

gaattctcatatttaccattcttagtgcaatacaaactatggtgaagttt
gtacaaatcagatatgcagacatattttgcatgtagaaccaacatttctt
atataatgaaagtaaagaaattacatttcacatttcttattaaaataaac
tcctgtgtgaaagggacagattacttatgtaatttaattctgtaagagtc
ctagtttctacacttatgatttttaaaatacttgattctctgtgataact
gaaaggtgctcttgtatttgacttctgtaagtgatctgtcataagaccag
aatttgtaacagtaaaacattgcacatataactgaaggactttttattta
aagggtataggccagaaatctcacacatgagggatgggatactgtggccc
tggaatactcctcttcctctatctttagagatgagaacctaagtgtcaga
attagctcaaaattgagaaataaataattaagtgataaaaataaatgaat
aaatagttttggtgtctattttctagtcataaattgcccattgtatttca
taatgcttaaattgcatacgaaggccacactttgcaagaaaaaaatagat
ttaaaaaagttttctaaaaacagttttatttatattcattttatataaat
gcaagttttacatgcatggatatatgtgtatcatatggatgcctggcacc
ctcagattccaggtgaggatatgaaatcttctcaaatcagagatagatgt
gattatgagcaggcacgtggatgatgggacctgaactcagatatacttac
agcaatatgggatgcaactctagccacagtctctccttcctcctctttta
ttttcctctctgtttttgtcatctccttcctcttttttaactttcttttg
tctatctttctacaaaataactcttacataattcattatataagcactcg
agccacatttaggctgttcgttgcatatacctggcttaaaagaaagttac
tcaaatcatttttgtttcatattgtagacccctgagctgggccttctgct
caggtccgggatgagctgaccgtacctaatgacctggaagagaaacatac
tgatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150796280_150797456
seq2: B6Ng01-243I02.b_43_1184 (reverse)

seq1  CTGAGGGAGTTGGGGGTGAAACAAAGGGAATGTGGTGTAGTTGAAGACA-  49
      ||||||||||| ||||||| || |||  | || ||| ||  || ||||| 
seq2  CTGAGGGAGTTCGGGGTGAGACCAAGCAATTGGGGT-TACGTGGAGACAG  49

seq1  GCTGT--AGAAAAGTTGTGTG-ATCCTTTAGATATAGGGAAGAGAGGTCA  96
      |||||   |||||| |||||| |||||||||||||| || ||||||||||
seq2  GCTGTTAGGAAAAGGTGTGTGAATCCTTTAGATATAAGG-AGAGAGGTCA  98

seq1  CAGCAAGTAATCCTCTATAAAACTGGGACTAAGAGTTCCAGGACATCCAG  146
      |||| |||||| |||||| ||||| ||||| ||||||||||||||||   
seq2  CAGC-AGTAAT-CTCTATTAAACT-GGACT-AGAGTTCCAGGACATC--A  142

seq1  GGCTACACAGAGAAACCAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  196
      ||||||  ||   ||||||| |||                          
seq2  GGCTACCGAG---AACCAAAGAGA--------------------------  163

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  246
          |||   |||   |||   |||   |||   |||   |||   ||| 
seq2  ---GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  210

seq1  GAAGAAGAAAAAAAAAAAAAGACTGGGTGACTGGAATTGCATGAGAGGAA  296
        |||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGAGAAAAAAAAAGACTGGGTGACTGGAATTGCATGAGAGGAA  260

seq1  GGAGATGCC-TTCTATTTTCAGGTCTGGATTAGAGTGTGAGATTGTTTCT  345
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCCTTTCTATTTTCAGGTCTGGATTAGAGTGTGAGATTGTTTCT  310

seq1  AAATCTCCTACCATGGACTGTGCACCCCTGGTGCTAAGTATTTTCTGTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCTACCATGGACTGTGCACCCCTGGTGCTAAGTATTTTCTGTCC  360

seq1  CATAACATCAGAAATGTCATGATGAAGAAAATGTGAGGCACAGCATATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCAGAAATGTCATGATGAAGAAAATGTGAGGCACAGCATATAT  410

seq1  CCAACGCAAGCTTTTATACAGAAAGAACATATTCAGAGAGGTTTAAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGCAAGCTTTTATACAGAAAGAACATATTCAGAGAGGTTTAAAAAA  460

seq1  TATATGGCACCTTGGAAGGGTGAGCTTCTGTGAAATAAACATGCTATGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCACCTTGGAAGGGTGAGCTTCTGTGAAATAAACATGCTATGCC  510

seq1  ATCAAGCTGTGGTTATTTACAGCAAGCACAGGCATTGTCTTCTCAACCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTGTGGTTATTTACAGCAAGCACAGGCATTGTCTTCTCAACCTT  560

seq1  CACACCTCAAGTTGTTTCAATAAGCCCATACTGTTCCTGTGAGAAGTAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCAAGTTGTTTCAATAAGCCCATACTGTTCCTGTGAGAAGTAAT  610

seq1  TACAACTAGAAATGATAGCAAAACCATATTCTCAAAGGACATTGTTGTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAGAAATGATAGCAAAACCATATTCTCAAAGGACATTGTTGTAT  660

seq1  GGTAACCTAATGATGCAGATAGAATATCGTTTAGCACATTTTAAAAAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTAATGATGCAGATAGAATATCGTTTAGCACATTTTAAAAAGAA  710

seq1  TTATGAAGAACATTGCCAATGACATTATGTTATGTCCTTTAACATATAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGAACATTGCCAATGACATTATGTTATGTCCTTTAACATATAAC  760

seq1  ATAATATTTGAATGCAAAATAAGTACAATGCCTTTAAAGGGTTGAATAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTGAATGCAAAATAAGTACAATGCCTTTAAAGGGTTGAATAAA  810

seq1  AACCTAACTTTTCAAAATTCATATAGCTCAGCACAATATTCTTCTTATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACTTTTCAAAATTCATATAGCTCAGCACAATATTCTTCTTATGT  860

seq1  GAGTCATAATTTACATAAATCCACATCCATGAGATACTAATGTTTTTGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATAATTTACATAAATCCACATCCATGAGATACTAATGTTTTTGAA  910

seq1  TAGCAAGAAATGATGTCTTAAAAATAACATATGATATTATAACAATAATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGAAATGATGTCTTAAAAATAACATATGATATTATAACAATAATC  960

seq1  ATAAGCAAAATATTGTGTATTTCATTTTGCATATTTTAAAAGGATATAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAATATTGTGTATTTCATTTTGCATATTTTAAAAGGATATAGA  1010

seq1  TAATAGATTTTATATTAAAATGTTTCCTCATTAAATATAAGTCAAAATAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTTTATATTAAAATGTTTCCTCATTAAATATAAGTCAAAATAT  1060

seq1  AGGCTTTTACTTGAACATTCATTGATTTTAATATGAAATAATTACTTCAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTACTTGAACATTCATTGATTTTAATATGAAATAATTACTTCAC  1110

seq1  TAAATGCTAAAGACAATAAATAAAAAGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  TAAATGCTAAAGACAATAAATAAAAAGAATTC  1142


seq1: chr1_150678288_150679400
seq2: B6Ng01-243I02.g_65_1171

seq1  GAATTCTCATATTTACCATTCTTAGTGCAATACAAACTATGGTGAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATTTACCATTCTTAGTGCAATACAAACTATGGTGAAGTTT  50

seq1  GTACAAATCAGATATGCAGACATATTTTGCATGTAGAACCAACATTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATCAGATATGCAGACATATTTTGCATGTAGAACCAACATTTCTT  100

seq1  ATATAATGAAAGTAAAGAAATTACATTTCACATTTCTTATTAAAATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAAAGTAAAGAAATTACATTTCACATTTCTTATTAAAATAAAC  150

seq1  TCCTGTGTGAAAGGGACAGATTACTTATGTAATTTAATTCTGTAAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGAAAGGGACAGATTACTTATGTAATTTAATTCTGTAAGAGTC  200

seq1  CTAGTTTCTACACTTATGATTTTTAAAATACTTGATTCTCTGTGATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCTACACTTATGATTTTTAAAATACTTGATTCTCTGTGATAACT  250

seq1  GAAAGGTGCTCTTGTATTTGACTTCTGTAAGTGATCTGTCATAAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGCTCTTGTATTTGACTTCTGTAAGTGATCTGTCATAAGACCAG  300

seq1  AATTTGTAACAGTAAAACATTGCACATATAACTGAAGGACTTTTTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAACAGTAAAACATTGCACATATAACTGAAGGACTTTTTATTTA  350

seq1  AAGGGTATAGGCCAGAAATCTCACACATGAGGGATGGGATACTGTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTATAGGCCAGAAATCTCACACATGAGGGATGGGATACTGTGGCCC  400

seq1  TGGAATACTCCTCTTCCTCTATCTTTAGAGATGAGAACCTAAGTGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACTCCTCTTCCTCTATCTTTAGAGATGAGAACCTAAGTGTCAGA  450

seq1  ATTAGCTCAAAATTGAGAAATAAATAATTAAGTGATAAAAATAAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTCAAAATTGAGAAATAAATAATTAAGTGATAAAAATAAATGAAT  500

seq1  AAATAGTTTTGGTGTCTATTTTCTAGTCATAAATTGCCCATTGTATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTTGGTGTCTATTTTCTAGTCATAAATTGCCCATTGTATTTCA  550

seq1  TAATGCTTAAATTGCATACGAAGGCCACACTTTGCAAGAAAAAAATAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTAAATTGCATACGAAGGCCACACTTTGCAAGAAAAAAATAGAT  600

seq1  TTAAAAAAGTTTTCTAAAAACAGTTTTATTTATATTCATTTTATATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGTTTTCTAAAAACAGTTTTATTTATATTCATTTTATATAAAT  650

seq1  GCAAGTTTTACATGCATGGATATATGTGTATCATATGGATGCCTGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTTACATGCATGGATATATGTGTATCATATGGATGCCTGGCACC  700

seq1  CTCAGATTCCAGGTGAGGATATGAAATCTTCTCAAATCAGAGATAGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCCAGGTGAGGATATGAAATCTTCTCAAATCAGAGATAGATGT  750

seq1  GATTATGAGCAGGCACGTGGATGATGGGACCTGAACTCAGATATACTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAGCAGGCACGTGGATGATGGGACCTGAACTCAGATATACTTAC  800

seq1  AGCAATATGGGATGCAACTCTAGCCACAGTCTCTCCTTCCTCCTCTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGGGATGCAACTCTAGCCACAGTCTCTCCTTCCTCCTCTTTTA  850

seq1  TTTTCCTCTCTGTTTTTGTCATCTCCTTCCTCTTTTTTAACTTTCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTCTGTTTTTGTCATCTCCTTCCTCTTTTTTAACTTTCTTTTG  900

seq1  TCTATCTTTCTACAAAATAACTCTTACATAATTCATTATATAAGCACTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTCTACAAAATAACTCTTACATAATTCATTATATAAGCACTCG  950

seq1  AGCCACATTTAGGCTGTTCGTTGCATAATACCTGGCTTAAAAGAAAGTTA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCCACATTTAGGCTGTTCGTTGCAT-ATACCTGGCTTAAAAGAAAGTTA  999

seq1  CTCAAATCATTTTTGTTTCATATTGTAAGACCCCTGAAGCTGGGCC-TCT  1049
      |||||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  CTCAAATCATTTTTGTTTCATATTGT-AGACCCCTG-AGCTGGGCCTTCT  1047

seq1  GCTCAAGTCCCGGGATGAGCTGACCGGTACCCTAATGACCTGAGAGAAAA  1099
      ||||| || |||||||||||||||| ||| ||||||||||||  ||| ||
seq2  GCTCAGGT-CCGGGATGAGCTGACC-GTA-CCTAATGACCTGGAAGAGAA  1094

seq1  CCATACCTGATGCA  1113
       |||| ||||||||
seq2  ACATA-CTGATGCA  1107


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